Statistics and Probability Commons^™

Evaluating The Efficacy Of Conditional Analysis Of Variance Under Heterogeneity And Non-Normality, Yan Wang, Thanh Pham, Diep Nguyen, Eun Sook Kim, Yi-Hsin Chen, Jeffrey Kromrey, Zhiyao Yi, Yue Yin

Journal of Modern Applied Statistical Methods

A simulation study was conducted to examine the efficacy of conditional analysis of variance (ANOVA) methods where the initial homogeneity of variance screening leads to the choice between the ANOVA F test and robust ANOVA methods. Type I error control and statistical power were investigated under various conditions.

Developing Methods Of Processing And Analyzing Genetic Data To Examine Tiger Salamander Population Structure, Dennis Dongmin Kim

Undergraduate Research Symposium 2018

Professor Heather Waye and her colleagues conducted a pilot study in 2014 to measure genetic diversity and dispersal pattern in a population of tiger salamanders in west-central Minnesota. The ultimate goal of this research was to analyze the genetic differences between tiger salamander larvae captured in breeding ponds within Pepperton Waterfowl Production Area to understand the population structure and movement patterns. They expected that ponds closer to each other would have more similar genetic information, and that genetic differences between ponds would increase with geographic distance. However, the initial analysis using standard techniques failed to uncover useful patterns in the …

Visualizing Statistical Data On United States Agriculture, Xingyao Xiao

Undergraduate Research Symposium 2018

Food is essential to life. The United States Department of Agriculture (USDA) plays an indispensable role in ensuring people have access to healthy food. However, the data on the USDA website is not easy to access. Users must download many files to get data about animals, crops, the weather, and so on. To make the data more accessible to the general public, I built a web-based application to help make the data easy to access, explore, and compare. My application integrates multiple datasets from USDA website to provide graphic visualizations that enable users to get the exact, specific data intervals …

Elementary/Middle School Pre-Service Teachers’ Understanding Of Variability And The Use Of Dynamical Statistical Software, Yaomingxin Lu

Research and Creative Activities Poster Day

A primary purpose of the study was to examine the effects of using dynamical statistical software (DSS) on prospective teachers’ (PSTs) understanding of statistical concepts, especially variability. Data were collected from PSTs enrolled in a probability and statistics course designed for prospective K-8 teachers. After initial analysis of the data using coding and classification schemes, we found the need to develop a more targeted framework to analyze students’ different levels of understanding. The variability framework (Garfield & Ben-Zvi, 2005) and the Structure of Observed Learning Outcomes (SOLO) taxonomy were then used in combination to develop a revised framework in order …

Quality Of Life During Treatment With Chemohormonal Therapy: Analysis Of E3805 Chemohormonal Androgen Ablation Randomized Trial In Prostate Cancer, Alicia K. Morgans, Yu-Hui Chen, Christopher J. Sweeney, David F. Jarrard, Elizabeth R. Plimack, Benjamin A. Gartrell, Michael A. Carducci, Maha Hussain, Jorge A. Garcia, David Cella, Robert S. Dipaola, Linda J. Patrick-Miller

Internal Medicine Faculty Publications

Purpose

Chemohormonal therapy with docetaxel and androgen deprivation therapy (ADT+D) for metastatic hormone-sensitive prostate cancer improves overall survival as compared with androgen deprivation therapy (ADT) alone. We compared the quality of life (QOL) between patients with metastatic hormone-sensitive prostate cancer who were treated with ADT+D and those who were treated with ADT alone.

Methods

Men were randomly assigned to ADT+ D (six cycles) or to ADT alone. QOL was assessed by Functional Assessment of Cancer Therapy-Prostate (FACT-P), FACT-Taxane, Functional Assessment of Chronic Illness Therapy-Fatigue, and the Brief Pain Inventory at baseline and at 3, 6, 9, and 12 months. The …

Clustering Biological Data With Self-Adjusting High-Dimensional Sieve, Josselyn Gonzalez

Theses and Dissertations

Data classification as a preprocessing technique is a crucial step in the analysis and understanding of numerical data. Cluster analysis, in particular, provides insight into the inherent patterns found in data which makes the interpretation of any follow-up analyses more meaningful. A clustering algorithm groups together data points according to a predefined similarity criterion. This allows the data set to be broken up into segments which, in turn, gives way for a more targeted statistical analysis. Cluster analysis has applications in numerous fields of study and, as a result, countless algorithms have been developed. However, the quantity of options makes …

The Validity Of Online Patient Ratings Of Physicians, Jennifer L. Priestley, Yiyun Zhou, Robert Mcgrath

Faculty Articles

Background: Information from ratings sites are increasingly informing patient decisions related to health care and the selection of physicians.

Objective: The current study sought to determine the validity of online patient ratings of physicians through comparison with physician peer review.

Methods: We extracted 223,715 reviews of 41,104 physicians from 10 of the largest cities in the United States, including 1142 physicians listed as “America’s Top Doctors” through physician peer review. Differences in mean online patient ratings were tested for physicians who were listed and those who were not.

Results: Overall, no differences were found between the online patient ratings based …

Waste Management By Waste: Removal Of Acid Dyes From Wastewaters Of Textile Coloration Using Fish Scales, S M Fijul Kabir

LSU Master's Theses

Removal of hazardous acid dyes by economical process using low-cost bio-sorbents from wool industry wastewaters is of a pressing need, since it causes skin and respiratory diseases and disrupts other environmental components. Fish scales (FS), a by-product of fish industry, a type of solid waste, are usually discarded carelessly resulting in pungent odor and environmental burden. In this research, the FS of black drum (Pogonias cromis) were used for the removal of acid dyes (acid red 1 (AR1), acid blue 45 (AB45) and acid yellow 127 (AY126)) from wool industry wastewaters by absorption process with a view to …

A Comparison Of Unsupervised Methods For Dna Microarray Leukemia Data, Denise Harness

Appalachian Student Research Forum

Advancements in DNA microarray data sequencing have created the need for sophisticated machine learning algorithms and feature selection methods. Probabilistic graphical models, in particular, have been used to identify whether microarrays or genes cluster together in groups of individuals having a similar diagnosis. These clusters of genes are informative, but can be misleading when every gene is used in the calculation. First feature reduction techniques are explored, however the size and nature of the data prevents traditional techniques from working efficiently. Our method is to use the partial correlations between the features to create a precision matrix and predict which …

Under The Influence, Leonardo Cavicchio

Honors Projects in Mathematics

The purpose of this Honors Capstone entitled Under the Influence is to assess the validity of claims concerning the possible influence of roommates on one another, concerning alcohol on college campuses. This will be done by examining data collected in a prior study conducted over a two-year period. This analysis will focus on how alcohol consumption changes in correlation with the personality factors of roommates over an extended period of time. This secondary analysis of de-identified data will focus on primary and secondary subquestions. The primary question that will be addressed with the data set collected from the University of …

The Influence Of A Proposed Margin Criterion On The Accuracy Of Parallel Analysis In Conditions Engendering Underextraction, Justin M. Jones

Masters Theses & Specialist Projects

One of the most important decisions to make when performing an exploratory factor or principal component analysis regards the number of factors to retain. Parallel analysis is considered to be the best course of action in these circumstances as it consistently outperforms other factor extraction methods (Zwick & Velicer, 1986). Even so, parallel analysis could benefit from further research and refinement to improve its accuracy. Characteristics such as factor loadings, correlations between factors, and number of variables per factor all have been shown to adversely impact the effectiveness of parallel analysis as a means of identifying the number of factors …

Score Test And Likelihood Ratio Test For Zero-Inflated Binomial Distribution And Geometric Distribution, Xiaogang Dai

Masters Theses & Specialist Projects

The main purpose of this thesis is to compare the performance of the score test and the likelihood ratio test by computing type I errors and type II errors when the tests are applied to the geometric distribution and inflated binomial distribution. We first derive test statistics of the score test and the likelihood ratio test for both distributions. We then use the software package R to perform a simulation to study the behavior of the two tests. We derive the R codes to calculate the two types of error for each distribution. We create lots of samples to approximate …

A Convolutional Neural Network Model For Species Classification Of Camera Trap Images, Annie Casey

Mathematics Undergraduate Theses

The overall purpose of this study was to automate the manual process of tagging species found in camera trap images using machine learning. The basic design of this study was to implement a Convolutional Neural Network model in Python using the Keras and Tensorflow modules that learn to recognize patterns in images in order to classify what species is in a given image and to label it accordingly. Results of the analysis highlight the importance of a large sample size, the degree of accuracy according to various arguments in the model, effectiveness of multiple layers that include Max Pooling, and …

Physical Activity Across The Lifespan And Liver Cancer Incidence In The Nih-Aarp Diet And Health Study Cohort., Hannah Arem, Erikka Loftfield, Pedro F Saint-Maurice, Neal D Freedman, Charles E Matthews

Epidemiology Faculty Publications

While liver cancer rates in the United States are increasing, 5-year survival is only 17.6%, underscoring the importance of prevention. Physical activity has been associated with lower risk of developing liver cancer, but most studies assess physical activity only at a single point in time, often in midlife. We utilized physical activity data from 296,661 men and women in the NIH-AARP Diet and Health Study cohort to test whether physical activity patterns over the life course could elucidate the importance of timing of physical activity on liver cancer risk. We used group modeling of longitudinal data to create physical activity …

Factors Affecting The Number And Type Of Student Research Products For Chemistry And Physics Students At Primarily Undergraduate Institutions: A Case Study., Birgit Mellis, Patricia Soto, Chrystal D. Bruce, Graciela Lacueva, Anne Wilson, Rasitha Jayasekare

2018 Faculty Bibliography

For undergraduate students, involvement in authentic research represents scholarship that is consistent with disciplinary quality standards and provides an integrative learning experience. In conjunction with performing research, the communication of the results via presentations or publications is a measure of the level of scientific engagement. The empirical study presented here uses generalized linear mixed models with hierarchical bootstrapping to examine the factors that impact the means of dissemination of undergraduate research results. Focusing on the research experiences in physics and chemistry of undergraduates at four Primarily Undergraduate Institutions (PUIs) from 2004–2013, statistical analysis indicates that the gender of the student …

Developing Statistical Methods For Data From Platforms Measuring Gene Expression, Gaoxiang Jia

Statistical Science Theses and Dissertations

This research contains two topics: (1) PBNPA: a permutation-based non-parametric analysis of CRISPR screen data; (2) RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing NanoString nCounter data from FFPE samples.

Clustered regularly-interspaced short palindromic repeats (CRISPR) screens are usually implemented in cultured cells to identify genes with critical functions. Although several methods have been developed or adapted to analyze CRISPR screening data, no single spe- cific algorithm has gained popularity. Thus, rigorous procedures are needed to overcome the shortcomings of existing algorithms. We developed a Permutation-Based Non-Parametric Analysis (PBNPA) algorithm, which computes p-values at the gene level …

Impact Of Home Field Advantage: Analyzed Across Three Professional Sports, Michael S. Risser, Blake R. Gray, Ryan A. Kelly

Student Publications

We examined the impact of home-field advantage in the NFL, NBA, and MLB. We defined home-field advantage as winning more than 50% of the home games. Additionally, we took into consideration how season length could act as a moderator and influence the impact of home-field advantage. We collected data from the 2015 NBA and MLB seasons and the 2015 and 2016 NFL seasons to determine statistical significance. In total, we got data from 4,141 games to analyze. We found that there is statistical significance that the home team has a better chance of winning than the away team across the …

Fishery Interaction Modeling Of Cetacean Bycatch In The California Drift Gillnet Fishery To Inform A Dynamic Ocean Management Tool, Nicholas B. Sisson

Biological Sciences Theses & Dissertations

Understanding the drivers that lead to interaction between target species in a fishery and marine mammals is a critical aspect in efforts to reduce bycatch. In the California drift gillnet fishery static management approaches and gear changes have reduced bycatch but neither measure ascertains the underlying dynamics causing bycatch events. To avoid further potentially drastic measures such as hard caps, dynamic management approaches that consider the scales relevant to physical dynamics, animal movement and human use could be implemented. A key component to this approach is determining the factors that lead to fisheries interactions. Using 25 years (1990-2014) of National …

Prediction Of Lncrna-Disease Associations Based On Inductive Matrix Completion, Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, Jianxin Wang

Computer Science Faculty Publications

Motivation: Accumulating evidences indicate that long non-coding RNAs (lncRNAs) play pivotal roles in various biological processes. Mutations and dysregulations of lncRNAs are implicated in miscellaneous human diseases. Predicting lncRNA–disease associations is beneficial to disease diagnosis as well as treatment. Although many computational methods have been developed, precisely identifying lncRNA–disease associations, especially for novel lncRNAs, remains challenging.

Results: In this study, we propose a method (named SIMCLDA) for predicting potential lncRNA– disease associations based on inductive matrix completion. We compute Gaussian interaction profile kernel of lncRNAs from known lncRNA–disease interactions and functional similarity of diseases based on disease–gene and gene–gene onotology …

Direct Error Driven Learning For Deep Neural Networks With Applications To Bigdata, R. Krishnan, Jagannathan Sarangapani, V. A. Samaranayake

Electrical and Computer Engineering Faculty Research & Creative Works

In this paper, generalization error for traditional learning regimes-based classification is demonstrated to increase in the presence of bigdata challenges such as noise and heterogeneity. To reduce this error while mitigating vanishing gradients, a deep neural network (NN)-based framework with a direct error-driven learning scheme is proposed. To reduce the impact of heterogeneity, an overall cost comprised of the learning error and approximate generalization error is defined where two NNs are utilized to estimate the costs respectively. To mitigate the issue of vanishing gradients, a direct error-driven learning regime is proposed where the error is directly utilized for learning. It …