Statistical, Nonlinear, and Soft Matter Physics Commons^™

Inference And Control In Regulatory Genomics, Siddharth Sharma

Biology and Medicine Through Mathematics Conference

No abstract provided.

Vibrational Relaxation Theory For Systems Embedded In Microscopically Specified Reservoirs, Anastasia Aemilia Ierides

Physics & Astronomy ETDs

This dissertation is a study of the theoretical framework of the practical as well as fundamental problem of the process of relaxation to equilibrium of quantum mechanical systems. The fundamental aspect is concerned with the simultaneous occurrence of decoherence and population equilibration. The practical aspect deals with experimental observations of vibrational relaxation of molecules embedded in liquids or solids. The systems include, but are not limited to, the nondegenerate dimer and harmonic oscillator, in one case weak and in the other strong, interaction with a thermal bath. The time dependence of the energy and the temperature dependence of the relaxation …

Physical Applications Of The Geometric Minimum Action Method, George L. Poppe Jr.

Dissertations, Theses, and Capstone Projects

This thesis extends the landscape of rare events problems solved on stochastic systems by means of the \textit{geometric minimum action method} (gMAM). These include partial differential equations (PDEs) such as the real Ginzburg-Landau equation (RGLE), the linear Schroedinger equation, along with various forms of the nonlinear Schroedinger equation (NLSE) including an application towards an ultra-short pulse mode-locked laser system (MLL).

Additionally we develop analytical tools that can be used alongside numerics to validate those solutions. This includes the use of instanton methods in deriving state transitions for the linear Schroedinger equation and the cubic diffusive NLSE.

These analytical solutions are …

Standard And Anomalous Wave Transport Inside Random Media, Xujun Ma

Dissertations, Theses, and Capstone Projects

This thesis is a study of wave transport inside random media using random matrix theory. Anderson localization plays a central role in wave transport in random media. As a consequence of destructive interference in multiple scattering, the wave function decays exponentially inside random systems. Anderson localization is a wave effect that applies to both classical waves and quantum waves. Random matrix theory has been successfully applied to study the statistical properties of transport and localization of waves. Particularly, the solution of the Dorokhov-Mello-Pereyra-Kumar (DMPK) equation gives the distribution of transmission.

For wave transport in standard one dimensional random systems in …

Atmospheric Radiation And Tgfs: Unexplained Radiation In Our Skies, Adrian Gallegos

Honors College Research

There is a significant correlation between atmospheric electrification via thunderstorms and the occurrence of large emissions of x-ray and gamma ray radiation known as Terrestrial Gamma Ray Flashes (TGFs). Some physical phenomenon may be explained by either the RREA or Thermal Runaway models, but the scientific community as a whole is still largely at work on the theoretical frameworks.

Subsystem Eigenstate Thermalization Hypothesis, Anatoly Dymarsky, Nima Lashkari, Hong Liu

Physics and Astronomy Faculty Publications

Motivated by the qualitative picture of canonical typicality, we propose a refined formulation of the eigenstate thermalization hypothesis (ETH) for chaotic quantum systems. This formulation, which we refer to as subsystem ETH, is in terms of the reduced density matrix of subsystems. This strong form of ETH outlines the set of observables defined within the subsystem for which it guarantees eigenstate thermalization. We discuss the limits when the size of the subsystem is small or comparable to its complement. In the latter case we outline the way to calculate the leading volume-proportional contribution to the von Neumann and Renyi entanglment …

The Inferential Design Of Entropy And Its Application To Quantum Measurements, Kevin Vanslette

Legacy Theses & Dissertations (2009 - 2024)

This thesis synthesizes probability and entropic inference with Quantum Mechanics and quantum measurement [1-6]. It is shown that the standard and quantum relative entropies are tools \emph{designed} for the purpose of updating probability distributions and density matrices, respectively [1]. The derivation of the standard and quantum relative entropy are completed in tandem following the same inferential principles and design criteria. This provides the first design derivation of the quantum relative entropy while also reducing the number of required design criteria to two.

Developing A 3d In Vitro Model By Microfluidics, Hung-Ta Chien

Dissertations and Theses

In vitro tissue models play an important role in providing a platform that mimics the realistic tissue microenvironment for stimulating and characterizing the cellular behavior. In particular, the hydrogel-based 3D in vitro models allow the cells to grow and interact with their surroundings in all directions, thus better mimicking in vivo than their 2D counterparts. The objective of this thesis is to establish a 3D in vitro model that mimics the anatomical and functional complexity of the realistic cancer microenvironment for conveniently studying the transport coupling in porous tissue structures. We pack uniform-sized PEGDA-GelMA microgels in a microfluidic chip to …

Band Filling And Temperature Effects On Electrical Conductivity In Strongly Correlated Hybridized Electron Systems, Dylan T. Meyer

All Graduate Theses, Dissertations, and Other Capstone Projects

We investigate the effects of band filling as well as temperature change on the electrical conductivity of materials with strong interelectron interaction as well as band hybridization. This is done by use of the irreducible two-particle Green function method applied to strongly correlated electron systems described by the Periodic Anderson Model. It was found that there is a definite peak in electrical conductivity at low band occupancy when the d-energy sub-band is half filled. Conductivity was found to have a sharp drop with an increase in temperature as a result of thermal dispersion as well as a change in the …

Weak-Value Amplification And Optimal Parameter Estimation In The Presence Of Correlated Noise, Josiah Sinclair, Matin Hallaji, Aephraim M. Steinberg, Jeff Tollaksen, Andrew N. Jordan

Mathematics, Physics, and Computer Science Faculty Articles and Research

We analytically and numerically investigate the performance of weak-value amplification (WVA) and related parameter estimation methods in the presence of temporally correlated noise. WVA is a special instance of a general measurement strategy that involves sorting data into separate subsets based on the outcome of a second “partitioning” measurement. Using a simplified correlated noise model that can be analyzed exactly together with optimal statistical estimators, we compare WVA to a conventional measurement method. We find that WVA indeed yields a much lower variance of the parameter of interest than the conventional technique does, optimized in the absence of any partitioning …

Dynamic Self-Assembly And Self-Organized Transport Of Magnetic Micro-Swimmers, Gašper Kokot, German Kolmakov V, Igor S. Aranson, Alexey Snezhko

Publications and Research

We demonstrate experimentally and in computer simulations that magnetic microfloaters can self-organize into various functional structures while energized by an external alternating (ac) magnetic field. The structures exhibit self-propelled motion and an ability to carry a cargo along a pre-defined path. The morphology of the self-assembled swimmers is controlled by the frequency and amplitude of the magnetic field.

Interplay Of Quantum Size Effect, Anisotropy And Surface Stress Shapes The Instability Of Thin Metal Films, Mikhail Khenner

Mathematics Faculty Publications

Morphological instability of a planar surface ([111], [011], or [001]) of an ultra-thin metal film is studied in a parameter space formed by three major effects (the quantum size effect, the surface energy anisotropy and the surface stress) that influence a film dewetting. The analysis is based on the extended Mullins equation, where the effects are cast as functions of the film thickness. The formulation of the quantum size effect (Z. Zhang et al., PRL 80, 5381 (1998)) includes the oscillation of the surface energy with thickness caused by electrons confinement. By systematically comparing the effects, their contributions into the …

Planar Granular Shear Flow Under External Vibration, Brian Utter, Eric P. Hoppmann

Faculty Journal Articles

We present results from a planar shear experiment in which a two-dimensional horizontal granular assembly of pentagonal particles sheared between two parallel walls is subjected to external vibration. Particle tracking and photoelastic measurements are used to quantify both grain scale motion and interparticle stresses with and without imposed vibrations. We characterize the particle motion in planar shear and find that flow of these strongly interlocking particles consists of transient vortex motion with a mean flow given by the sum of exponential profiles imposed by the shearing walls. Vibration is applied either through the shearing surface or as bulk vertical vibration …

Ion Size Effects On The Properties Of Charge Regulating Electric Double Layers, Divya Jyoti Prakash

Nanoscience and Microsystems ETDs

The behavior of charged interfaces formed in various systems like colloidal solution, fuel cells, battery, electro-deposition, catalysis is governed by the properties of electrical double layer(EDL). Civilized model with charge regulation boundary condition determined by thermodynamic equilibrium at the interface has been used to model electrical double layer and shows that size of the solvent plays a critical role in characterizing the properties of EDL using classical density functional theory.This thesis investigates the impact of ion size in electrolyte solutions on the electrical double layer formed at the interface using a similar model. It is found that ion size greatly …

Non-Hermitian Matter-Wave Mixing In Bose-Einstein Condensates: Dissipation-Induced Amplification, S. Wuster, Ramy El-Ganainy

Department of Physics Publications

We investigate the nonlinear scattering dynamics in interacting atomic Bose-Einstein condensates under non-Hermitian dissipative conditions. We show that, by carefully engineering a momentum-dependent atomic loss profile, one can achieve matter-wave amplification through four-wave mixing in a quasi-one-dimensional nearly-free-space setup—a process that is forbidden in the counterpart Hermitian systems due to energy mismatch. Additionally, we show that similar effects lead to rich nonlinear dynamics in higher dimensions. Finally, we propose a physical realization for selectively tailoring the momentum-dependent atomic dissipation. Our strategy is based on a two-step process: (i) exciting atoms to narrow Rydberg or metastable excited states, and (ii) introducing …

Universal Slip Dynamics In Metallic Glasses And Granular Matter – Linking Frictional Weakening With Inertial Effects, Dmitri V. Denisov, Kinga A. Lorincz, Wendelin J. Wright, Todd C. Hufnagel, Aya Nawano, Xiaojun Gu, Jonathan T. Uhl, Karin A. Dahmen, Peter Schall

Faculty Journal Articles

Slowly strained solids deform via intermittent slips that exhibit a material-independent critical size distribution. Here, by comparing two disparate systems - granular materials and bulk metallic glasses - we show evidence that not only the statistics of slips but also their dynamics are remarkably similar, i.e. independent of the microscopic details of the material. By resolving and comparing the full time evolution of avalanches in bulk metallic glasses and granular materials, we uncover a regime of universal deformation dynamics. We experimentally verify the predicted universal scaling functions for the dynamics of individual avalanches in both systems, and show that both …

Relaxation Of Charge In Monolayer Graphene: Fast Nonlinear Diffusion Versus Coulomb Effects, Eugene B. Kolomeisky, Joseph P. Straley

Physics and Astronomy Faculty Publications

Pristine monolayer graphene exhibits very poor screening because the density of states vanishes at the Dirac point. As a result, charge relaxation is controlled by the effects of zero-point motion (rather than by the Coulomb interaction) over a wide range of parameters. Combined with the fact that graphene possesses finite intrinsic conductivity, this leads to a regime of relaxation described by a nonlinear diffusion equation with a diffusion coefficient that diverges at zero charge density. Some consequences of this fast diffusion are self-similar superdiffusive regimes of relaxation, the development of a charge depleted region at the interface between electron- and …

Code For "Noise-Enhanced Coding In Phasic Neuron Spike Trains", Cheng Ly, Brent D. Doiron

Statistical Sciences and Operations Research Data

This zip file contains Matlab scripts and ode (XPP) files to calculate the statistics of the models in "Noise-Enhanced Coding in Phasic Neuron Spike Trains". This article is published in PLoS ONE.

Enzymatically Active Microspheres For Self-Propelled Colloidal Engines, Jungeun Park

Dissertations and Theses

Micro- and nano-motors have attracted numerous attentions from various scientific areas due to their potential applications. Most studies on self-propelled colloidal engines have exploited catalytic decomposition of hydrogen peroxide to drive the motor. Since the hydrogen peroxide is caustic, it is not suitable to use in biological applications, encouraging people to develop “greener” fuels. The aim of this research is to study a new transduction mechanism for self-propulsion not tied to hydrogen peroxide, and which can in particular be used with biological molecules as fuels. In this study, we focus on making particles with enzymatic activity which can effectively decompose …

Variable Structure Feedback Control With Application To Spacecraft With Small Thrust Propulsion Systems, Samuel J. Kitchen-Mckinley

Doctoral Dissertations and Master's Theses

Small spacecrafts requiring small propulsion systems are becoming more popular for low Earth orbit. It is important for these research satellites to have accurate guidance and control systems. Small propulsion systems will also be beneficial for multiple small spacecrafts used future exploration expeditions beyond low Earth orbit. These small spacecrafts benefit from the simplicity of low thrust cold gas propulsion systems. Additionally, large spacecrafts using low thrust, high specific impulse propellants for main propulsion systems, such as ion engines, allow longer and more flexible missions, including Earth orbiting spacecraft and interplanetary spacecraft.

In order to extend the life of future …