Data Science Commons^™

Human Intestinal Condition Identification Based-On Blended Spatial And Morphological Feature Using Artificial Neural Network Classifier, Ummi Athiyah, Arif Wirawan Muhammad, Ahmad Azhari

Knowledge Engineering and Data Science

Colon cancer is a type of disease that attacks the intestinal walls cell of humans. Colorectal endoscopic screening technique is a common step carried out by the health expert/gynecologist to determine the condition of the human intestine. Manual interpretation requires quite a long time to reach a result. Along with the development of increasingly advanced digital computing techniques, then some of the weaknesses of the manually endoscopic image interpretation analysis model can be corrected by automating the detection process of the presence or absence of cancerous cells in the gut. Identification of human intestinal conditions using an artificial neural network …

Parallelization Of Partitioning Around Medoids (Pam) In K-Medoids Clustering On Gpu, Adhi Prahara, Dewi Pramudi Ismi, Ahmad Azhari

Knowledge Engineering and Data Science

K-medoids clustering is categorized as partitional clustering. K-medoids offers better result when dealing with outliers and arbitrary distance metric also in the situation when the mean or median does not exist within data. However, k-medoids suffers a high computational complexity. Partitioning Around Medoids (PAM) has been developed to improve k-medoids clustering, consists of build and swap steps and uses the entire dataset to find the best potential medoids. Thus, PAM produces better medoids than other algorithms. This research proposes the parallelization of PAM in k-medoids clustering on GPU to reduce computational time at the swap step of PAM. The parallelization …

Covid-19 Testnorm: A Tool To Normalize Covid-19 Testing Names To Loinc Codes, Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L Duvall, Elizabeth Hanchrow, Hongfang Liu, Kristine E Lynch, Michael Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu

Faculty, Staff and Student Publications

Large observational data networks that leverage routine clinical practice data in electronic health records (EHRs) are critical resources for research on coronavirus disease 2019 (COVID-19). Data normalization is a key challenge for the secondary use of EHRs for COVID-19 research across institutions. In this study, we addressed the challenge of automating the normalization of COVID-19 diagnostic tests, which are critical data elements, but for which controlled terminology terms were published after clinical implementation. We developed a simple but effective rule-based tool called COVID-19 TestNorm to automatically normalize local COVID-19 testing names to standard LOINC (Logical Observation Identifiers Names and Codes) …

Prediction Of Feed Utilization Performance In Clarias Gariepinus Using Multiple Linear Regression In Machine Learning, Adekunle Oluwatosin Familusi

Journal of Bioresource Management

Machine learning models can be used to make predictions about nutrient utilization performance index using available proximate analysis data on feed composition. Data from similar experiments on nutrient utilization performance was used to fit a multiple linear regression model for the prediction of four performance indexes. The Specific Growth Rate and percentage inclusion with strength of 0.57 was noted along with a negative relationship between protein efficiency and protein content. A negative relationship between Nitrogen Free Extract (NFE) and Protein Efficiency Ratio (PER) at NFE content ≥25 % was observed. PER was predicted with 85 % accuracy, while Weight Gain …

Janus: A Python Package For Agent-Based Modeling Of Land Use And Land Cover Change, K. E. Kaiser, A. N. Flores, C. R. Vernon

Geosciences Faculty Publications and Presentations

Janus is an open source Python package for agent-based modeling (ABM) of land use and land cover change (LULCC). Many ABMs of LULCC have been created across platforms, some of which are not ideal for large scale, high resolution scenarios. This model provides a simple object-oriented framework for creating ABMs specific to LULCC. The organizational philosophy of the modeling framework is to create software objects (agents) that are associated with specific and contextual attributes which are isolated from where those agents exist in the spatial setting of the model, and still provide clear linkages between the agent, their environment, and …

Improving Trust In Research: Supporting Claims With Evidence, Daniel B. Wright

Educational Psychology, Leadership, and Higher Education Faculty Research

Trust in science is important, and Open Education Studies aims to publish trusted research. Two issues are addressed here: access to the data on which the research is based and how these data are analyzed. Some guidelines from other entities are discussed. As a new journal our guidelines should be influenced by the opinions of readers and authors, and as such we welcome discussion of how to ensure trust in the research OES publishes.

Automatic Delamination Segmentation For Bridge Deck Based On Encoder-Decoder Deep Learning Through Uav-Based Thermography, Chongsheng Cheng, Zhexiong Shang, Zhigang Shen

Department of Construction Engineering and Management: Faculty Publications

Concrete deck delamination often demonstrates strong variations in size, shape, and temperature distribution under the influences of outdoor weather conditions. The strong variations create challenges for pure analytical solutions in infrared image segmentation of delaminated areas. The recently developed supervised deep learning approach demonstrated the potentials in achieving automatic segmentation of RGB images. However, its effectiveness in segmenting thermal images remains under-explored. The main challenge lies in the development of specific models and the generation of a large range of labeled infrared images for training. To address this challenge, a customized deep learning model based on encoder-decoder architecture is proposed …

Pathways To The Native Storyteller: A Method To Enable Computational Story Understanding, Aramide O. Kehinde

College of Computing and Digital Media Dissertations

The primary objective of this thesis is to develop a method that uses machine learning algorithms to enable computational story understanding. This research is conducted with the aim of establishing a system called the Native Storyteller that plans and creates storytelling experiences for human users. The paper first establishes the desired capabilities of the system and then deep dives into how to enable story understanding, which is the core ability the system needs to function. As such, the research places emphasis on natural language processing and its application to solving key problems in this context. Namely, machine representation of story …

Utilizing Neural Networks And Wearables To Quantify Hip Joint Angles And Moments During Walking And Stair Ascent, Megan V. Mccabe

ENGS 88 Honors Thesis (AB Students)

Wearable sensors were leveraged to develop two methods for computing hip joint angles and moments during walking and stair ascent that are more portable than the gold standard. The Insole-Standard (I-S) approach replaced force plates with force-measuring insoles and achieved results that match the curvature of results from similar studies. Peaks in I-S kinetic results are high due to error induced by applying the ground reaction force to the talus. The Wearable-ANN (W-A) approach combines wearables with artificial neural networks to compute the same results. Compared against the I-S, the W-A approach performs well (average rRMSE = 18%, R^{2 …}

Variability In The Analysis Of A Single Neuroimaging Dataset By Many Teams, Rotem Botvinik-Nezer, Tom Schonberg, Russell A. Poldrack, Zachary J. Cole, Matthew R. Johnson, Phui Cheng Lim, Evan N. Linz, Douglas H. Schultz, Joshua E. Zosky, Narps Management Team, Jean M. Vettel, More Than 100 Other Co-Authors

Department of Psychology: Faculty Publications

Data analysis workflows in many scientific domains have become increasingly complex and flexible. To assess the impact of this flexibility on functional magnetic resonance imaging (fMRI) results, the same dataset was independently analyzed by 70 teams, testing nine ex-ante hypotheses. The flexibility of analytic approaches is exemplified by the fact that no two teams chose identical workflows to analyze the data. This flexibility resulted in sizeable variation in hypothesis test results, even for teams whose statistical maps were highly correlated at intermediate stages of their analysis pipeline. Variation in reported results was related to several aspects of analysis methodology. Importantly, …

Chemostratigraphy Of Carbonate Gravity Flows Of The Wolfcamp Formation In Crockett County, Midland Basin, Texas, Alex Blizzard, Julie Bloxson

Electronic Theses and Dissertations

Sediment gravity flows into deep-water environments are important stratigraphic traps in lithologically diverse reservoirs generating multiple plays for hydrocarbon exploration. These highly heterogeneous deposits can be studied by utilizing chemostratigraphy and higher-order sequence stratigraphy; being an accurate method for reservoir characterization. Studying these gravity flows along a carbonate platform’s slope can further expand an understanding of the stratigraphy that is filling adjacent basins. The application of elemental analyses can support in identifying mineralogy that impact reservoir quality, especially when conventional testing cannot be applied.

This study utilizes five cores containing the Wolfcamp Formation from the southeastern slope of the Central …

Integrating Finance Dictionary In Lexicon-Based Approach With Machine Learning Algorithm To Analyse The Impact Of Opec News Sentiment On Financial Market, Ling Wu

Student Works (2020-2029)

Since last few decades, machine learning algorithm which trains computers to learn from experience, is one of the most rapidly developing techniques which settles in the intersection research field of statistics and computer science. This research aims to build a properly trained machine learning classifier to study the impact of Organization of Petroleum Exporting Countries (OPEC) news sentiment on stock prices of six Malaysian public listed companies (energy sector) in the main board of Bursa Malaysia. The data used in this research are collected during the period 2012-2017. To carry out the research, firstly, lexicon-based approach is used to analyze …

Mining User-Generated Content Of Mobile Patient Portal: Dimensions Of User Experience, Mohammad Al-Ramahi, Cherie Noteboom

Research & Publications

Patient portals are positioned as a central component of patient engagement through the potential to change the physician-patient relationship and enable chronic disease self-management. The incorporation of patient portals provides the promise to deliver excellent quality, at optimized costs, while improving the health of the population. This study extends the existing literature by extracting dimensions related to the Mobile Patient Portal Use. We use a topic modeling approach to systematically analyze users’ feedback from the actual use of a common mobile patient portal, Epic’s MyChart. Comparing results of Latent Dirichlet Allocation analysis with those of human analysis validated the extracted …

Privacy-Preserving Recommendation System Using Federated Learning, Rahul Basu

Theses

Federated Learning is a form of distributed learning which leverages edge devices for training. It aims to preserve privacy by communicating users’ learning parameters and gradient updates to the global server during the training while keeping the actual data on the users’ devices. The training on global server is performed on these parameters instead of user data directly while fine tuning of the model can be done on client’s devices locally. However, federated learning is not without its shortcomings and in this thesis, we present an overview of the learning paradigm and propose a new federated recommender system framework that …

A Web-Based, Positive Emotion Skills Intervention For Enhancing Posttreatment Psychological Well-Being In Young Adult Cancer Survivors (Empower): Protocol For A Single-Arm Feasibility Trial, John M. Salsman, Laurie E. Mclouth, Michael Cohn, Janet A. Tooze, Mia Sorkin, Judith T. Moskowitz

Behavioral Science Faculty Publications

BACKGROUND: Adolescent and young adult cancer survivors (AYAs) experience clinically significant distress and have limited access to supportive care services. Interventions to enhance psychological well-being have improved positive affect and reduced depression in clinical and healthy populations but have not been routinely tested in AYAs.

OBJECTIVE: The aim of this protocol is to (1) test the feasibility and acceptability of a Web-based positive emotion skills intervention for posttreatment AYAs called Enhancing Management of Psychological Outcomes With Emotion Regulation (EMPOWER) and (2) examine proof of concept for reducing psychological distress and enhancing psychological well-being.

METHODS: The intervention development and testing are …

Linked Data For The Real World: Leveraging Metadata For Cataloging, Rachel S. Evans, Robin Fay, Linh Uong

Presentations

Will the promise of linked data actually save us time? How will catalogers and machines work together to streamline recording of data and authority maintenance work, allowing catalogers and metadata practitioners to focus more on data stewardship and less on being data scribes? Will Real World Objects (RWOs) and linked data help bridge the gap between traditional cataloging and the larger semantic web communities of practice, ensuring that library metadata supports our users’ search behaviors, those FRBR User Tasks? Or will it just provide more maintenance work down the road? This session will explore the potential of linked data and …

Online Graduate Certificate In Gis, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Using Case-Level Context To Classify Cancer Pathology Reports, Shang Gao, Mohammed Alawad, Noah Schaefferkoetter, Lynne Penberthy, Xiao-Cheng Wu, Eric B. Durbin, Linda Coyle, Arvind Ramanathan, Georgia Tourassi

Kentucky Cancer Registry Faculty Publications

Individual electronic health records (EHRs) and clinical reports are often part of a larger sequence-for example, a single patient may generate multiple reports over the trajectory of a disease. In applications such as cancer pathology reports, it is necessary not only to extract information from individual reports, but also to capture aggregate information regarding the entire cancer case based off case-level context from all reports in the sequence. In this paper, we introduce a simple modular add-on for capturing case-level context that is designed to be compatible with most existing deep learning architectures for text classification on individual reports. We …

An Application Of Machine Learning To Explore Relationships Between Factors Of Organisational Silence And Culture, With Specific Focus On Predicting Silence Behaviours, Stephen Barrett Dr

Articles

Research indicates that there are many individual reasons why people do not speak up when confronted with situations that may concern them within their working environment. One of the areas that requires more focused research is the role culture plays in why a person may remain silent when such situations arise. The purpose of this study is to use data science techniques to explore the patterns in a data set that would lead a person to engage in organisational silence. The main research question the thesis asks is: Is Machine Learning a tool that Social Scientists can use with respect …

Sensor Data Analysis In Smart Buildings, Manuel A. Mane Penton

Publications and Research

Data analysis and Machine Learning are destined to evolve the current technology infrastructure by solving technology and economy demands present mainly in developed cities like New York. This research proposes a machine learning (ML) based solution to alleviate one of the main issues that big buildings such as CUNY campuses have, that is the waste of energy resources. The analysis of data coming from the readings of different deployed sensors such as CO2, humidity and temperature can be used to estimate occupancy in a specific room and building in general. The outcome of this research established a relationship between the …