Impact Of Wood-Sourced Biochar On Carbon And Nitrogen Capture In Beef Feedlot Systems,
2021
University of Nebraska-Lincoln
Impact Of Wood-Sourced Biochar On Carbon And Nitrogen Capture In Beef Feedlot Systems, Jessica L. Sperber
Department of Animal Science: Dissertations, Theses, and Student Research
A feedlot growing and finishing experiment evaluated the effect of including pine-sourced biochar at 0.8 (growing) and 1.0% (finishing) of dietary DM on steer performance, carcass characteristics, and greenhouse gas (GHG) production (Exp 1). Two nutrient mass balance experiments were conducted during winter and summer seasons to evaluate the effect of spreading unprocessed red cedar biochar on the feedlot pen surface on manure nutrient capture and cattle performance (Exp 2). In Exp. 1, the inclusion of biochar in the growing diet did not impact steer performance. The inclusion of biochar in the finishing diet significantly reduced intake and gain, resulting …
Evaluation Of Cattle Management For Systems With Limited Perennial Pasture,
2021
University of Nebraska-Lincoln
Evaluation Of Cattle Management For Systems With Limited Perennial Pasture, Morgan Grabau
Department of Animal Science: Dissertations, Theses, and Student Research
Due to the conversion of perennial pasture and hay land to cropland in the western corn belt region, alternative methods of cow/calf management are being used to decrease reliance on perennial forages. These include grazing corn residue and feeding cow/calf pairs in confinement. Previous research has shown that limit-feeding a diet of low-quality forage and energy-dense co-products to cows in confinement is cost-effective. However, this strategy may limit the intake of the young calf and thus their performance. A study was conducted to evaluate the impacts of two alternative calf management strategies when pairs are in confinement, early weaning or …
The Dilemma Of Guinea Grass (Megathyrsus Maximus): A Valued Pasture Grass And A Highly Invasive Species,
2021
College of Natural Sciences
The Dilemma Of Guinea Grass (Megathyrsus Maximus): A Valued Pasture Grass And A Highly Invasive Species, Aaron C. Rhodes, Robert M. Plowes, John A. Goolsby, John F. Gaskin, Boaz Musyoka, Paul André Calatayud, Massimo Cristofaro, Eric D. Grahmann, Dino J. Martins, Lawrence E. Gilbert
All Peer-Reviewed Publications
On a global scale, invasive grasses threaten biodiversity and ecosystem function. Nevertheless, the importation of forage grasses is a significant economic force driven by globalization. Pastureland and rangeland are of critical economic and ecological importance, but novel grass species may lead to invasion. Recognizing that economically important species can also be ecologically damaging creates a contentious debate for land managers, policymakers, and ecologists alike. Many Afrotropical perennial grass species have been intentionally introduced pantropically given their high forage production and resistance to stress. However, these traits may also confer competitive ability, increasing the possibility of unintended escape and invasion. Further, …
An Update On The Distribution Of Glossina (Tsetse Flies) At The Wildlife-Human-Livestock Interface Of Akagera National Park, Rwanda,
2021
University of Rwanda
An Update On The Distribution Of Glossina (Tsetse Flies) At The Wildlife-Human-Livestock Interface Of Akagera National Park, Rwanda, Richard S. Gashururu, Samuel M. Githigia, Methode N. Gasana, Richard Habimana, Ndichu Maingi, Giuliano Cecchi, Massimo Paone, Weining Zhao, Daniel K. Masiga, James Gashumba
All Peer-Reviewed Publications
Background: Glossina (tsetse flies) biologically transmit trypanosomes that infect both humans and animals. Knowledge of their distribution patterns is a key element to better understand the transmission dynamics of trypanosomosis. Tsetse distribution in Rwanda has not been well enough documented, and little is known on their current distribution. This study determined the current spatial distribution, abundance, diversity, and seasonal variations of tsetse flies in and around the Akagera National Park. Methods: A longitudinal stratified sampling following the seasons was used. Biconical traps were deployed in 55 sites for 6 consecutive days of each study month from May 2018 to June …
Occurrence, Diversity And Distribution Of Trypanosoma Infections In Cattle Around The Akagera National Park, Rwanda,
2021
University of Rwanda
Occurrence, Diversity And Distribution Of Trypanosoma Infections In Cattle Around The Akagera National Park, Rwanda, S. Richard Gashururu, Ndichu Maingi, Samuel M. Githigia, Methode N. Gasana, Peter O. Odhiambo, Dennis O. Getange, Richard Habimana, Giuliano Cecchi, Weining Zhao, James Gashumba, Joel L. Bargul, Daniel K. Masiga
All Peer-Reviewed Publications
Background African Trypanosomiases threaten the life of both humans and animals. Trypanosomes are transmitted by tsetse and other biting flies. In Rwanda, the African Animal Trypanosomiasis (AAT) endemic area is mainly around the tsetse-infested Akagera National Park (NP). The study aimed to identify Trypanosoma species circulating in cattle, their genetic diversity and distribution around the Akagera NP. Methodology A cross-sectional study was carried out in four districts, where 1,037 cattle blood samples were collected. The presence of trypanosomes was determined by microscopy, immunolog-ical rapid test VerY Diag and PCR coupled with High-Resolution Melt (HRM) analysis. A parametric test (ANOVA) was …
Molecular Prevalence And Risk Factors Associated With Tick-Borne Pathogens In Cattle In Western Kenya,
2021
International Centre of Insect Physiology and Ecology Nairobi
Molecular Prevalence And Risk Factors Associated With Tick-Borne Pathogens In Cattle In Western Kenya, Tatenda Chiuya, Jandouwe Villinger, Daniel K. Masiga, Dickens O. Ondifu, Maurice K. Murungi, Lillian Wambua, Armanda D.S. Bastos, Eric M. Fèvre, Laura C. Falzon
All Peer-Reviewed Publications
Background: Tick-borne pathogens (TBPs) are of global importance, especially in sub-Saharan Africa where they represent a major constraint to livestock production. Their association with human disease is also increasingly recognized, signalling their zoonotic importance. It is therefore crucial to investigate TBPs prevalence in livestock populations and the factors associated with their presence. We set out to identify TBPs present in cattle and to determine associated risk factors in western Kenya, where smallholder livestock production is important for subsistence and market-driven income. Results: Tick-borne pathogen infections in blood samples collected from cattle at livestock markets and slaughterhouses between May 2017 and …
Considerations And Best Practices In Animal Science 16s
Ribosomal Rna Gene Sequencing Microbiome Studies,
2021
USDA, Agricultural Research Service
Considerations And Best Practices In Animal Science 16s Ribosomal Rna Gene Sequencing Microbiome Studies, Margaret D. Weinroth, Aeriel D. Belk, Chris Dean, Noelle Noyes, Dana K. Dittoe, Michael J. Rothrock Jr, Steven C. Ricke, Phillip R. Myer, Madison T. Henniger, Gustavo A. Ramírez, Brian B. Oakley, Katie Lynn Summers, Asha M. Miles, Taylor B. Ault-Seay, Zhongtang Yu, Jessica L. Metcalf, James E. Wells
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Microbiome studies in animal science using 16S rRNA gene sequencing have become increasingly common in recent years as sequencing costs continue to fall and bioinformatic tools become more powerful and user-friendly. The combination of molecular biology, microbiology, microbial ecology, computer science, and bioinformatics—in addition to the traditional considerations when conducting an animal science study—makes microbiome studies sometimes intimidating due to the intersection of different fields. The objective of this review is to serve as a jumping-off point for those animal scientists less familiar with 16S rRNA gene sequencing and analyses and to bring up common issues and concerns that arise …
Twenty-Four-Month Longitudinal Study Suggests Little To No
Horizontal Gene Transfer In Situ Between Third-Generation
Cephalosporin-Resistant Salmonella And Third-Generation
Cephalosporin-Resistant Escherichia Coli In A Beef
Cattle Feedyard,
2021
USDA, Agricultural Research Service
Twenty-Four-Month Longitudinal Study Suggests Little To No Horizontal Gene Transfer In Situ Between Third-Generation Cephalosporin-Resistant Salmonella And Third-Generation Cephalosporin-Resistant Escherichia Coli In A Beef Cattle Feedyard, John W. Schmidt, Sarah A. Murray, Aaron M. Dickey, Tommy L. Wheeler, Dayna M. Harhay, Terrance M. Arthur
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Third-generation cephalosporins (3GCs) are preferred treatments for serious human Salmonella enterica infections. Beef cattle are suspected to contribute to human 3GC-resistant Salmonella infections. Commensal 3GC-resistant Escherichia coli are thought to act as reservoirs of 3GC resistance because these strains are isolated more frequently than are 3GC-resistant Salmonella strains at beef cattle feedyards. During each of 24 consecutive months, four samples of pen surface material were obtained from five pens (N = 480) at a Nebraska feedyard to determine to the contribution of 3GC-resistant E. coli to the occurrence of 3GC-resistant Salmonella. Illumina whole genome sequencing was performed, and …
Prevalence Of Trypanosome Species In Cattle Near Ruma National Park, Lambwe Valley, Kenya: An Update From The Historical Focus For African Trypanosomosis,
2021
International Centre of Insect Physiology and Ecology Nairobi
Prevalence Of Trypanosome Species In Cattle Near Ruma National Park, Lambwe Valley, Kenya: An Update From The Historical Focus For African Trypanosomosis, Shewit Kalayou, Michael Nyang Anga Okal, Peter Otieno Odhiambo, Kawira Mathenge, Daniel Ochieng Gamba, Edward Kariuki, Francis Mcodimba, Daniel Masiga
All Peer-Reviewed Publications
The effective control of diseases in areas shared with wildlife depends on the validity of the epidemiologic parameters that guide interventions. Epidemiologic data on animal trypanosomosis in Lambwe valley are decades old, and the recent suspected outbreaks of the disease in the valley necessitate the urgent bridging of this data gap. This cross-sectional study estimated the prevalence of bovine trypanosomosis, identified risk factors, and investigated the occurrence of species with zoonotic potential in Lambwe valley. The area is ~324 km2, of which 120 km2 is the Ruma National Park. Blood was sampled from the jugular and marginal ear veins of …
Adaptive Selection Signatures In River Buffalo With Emphasis On Immune And Major Histocompatibility Complex Genes,
2021
The University of Adelaide
Adaptive Selection Signatures In River Buffalo With Emphasis On Immune And Major Histocompatibility Complex Genes, Yan Ren, Callum Macphillamy, Thu Hien To, Timothy P. L. Smith, John L. Williams, Wai Yee Low
Roman L. Hruska U.S. Meat Animal Research Center: Reports
River buffalo is an agriculturally important species with many traits, such as disease tolerance, which promote its use worldwide. Highly contiguous genome assemblies of the river buffalo, goat, pig, human and two cattle subspecies were aligned to study gene gains and losses and signs of positive selection. The gene families that have changed significantly in river buffalo since divergence from cattle play important roles in protein degradation, the olfactory receptor system, detoxification and the immune system. We used the branch site model in PAML to analyse single-copy orthologs to identify positively selected genes that may be involved in skin differentiation, …
Evaluating Large Spontaneous Deletions In A Bovine Cell Line Selected For Bovine Viral Diarrhea Virus Resistance,
2021
USDA ARS Roman L. Hruska U.S. Meat Animal Research Center
Evaluating Large Spontaneous Deletions In A Bovine Cell Line Selected For Bovine Viral Diarrhea Virus Resistance, Aspen M. Workman, Michael P. Heaton, Dennis A. Webster, Gregory P. Harhay, Theodore S. Kalbfleisch, Timothy P.L. Smith, Shollie M. Falkenberg, Daniel F. Carlson, Tad S. Sonstegard
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Bovine viral diarrhea virus’s (BVDV) entry into bovine cells involves attachment of virions to cellular receptors, internalization, and pH-dependent fusion with endosomal membranes. The primary host receptor for BVDV is CD46; however, the complete set of host factors required for virus entry is unknown. The Madin-Darby bovine kidney (MDBK) cell line is susceptible to BVDV infection, while a derivative cell line (CRIB) is resistant at the level of virus entry. We performed complete genome sequencing of each to identify genomic variation underlying the resistant phenotype with the aim of identifying host factors essential for BVDV entry. Three large compound deletions …
Moraxella Species Associated With Infectious Bovine Keratoconjunctivitis: Detection, Characterization, And Immunity,
2021
University of Wyoming & University of Nebraska-Lincoln
Moraxella Species Associated With Infectious Bovine Keratoconjunctivitis: Detection, Characterization, And Immunity, Matthew M. Hille
School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research
Infectious bovine keratoconjunctivitis (IBK) represents the most common ocular disease of cattle. Moraxella bovis (M. bovis) is the only bacteria proven to cause IBK under experimental conditions. A closely related bacteria, Moraxella bovoculi (M. bovoculi) is cultured from IBK lesions more frequently than M. bovis, and is suspected to cause IBK, although a causal relationship between M. bovoculi and IBK has not been confirmed experimentally. Two distinct genotypes were recently characterized in M. bovoculi based on whole genome sequencing. Genotype 1 M. bovoculi appears to represent a potential pathogen …
Predicting Carcass Cut Yields In Cattle From Digital Images Using Artificial Intelligence,
2021
Department of Mathematics, Munster Technological University, Cork , Ireland; Irish Breeding Federation, Bandon, Co. Cork, Ireland
Predicting Carcass Cut Yields In Cattle From Digital Images Using Artificial Intelligence, Darragh Matthews, Thierry Pabiou, Ross D. Evans, Christian Beder, Aengus Daly
Department of Mathematics Publications
Deep Learning (DL) has proven to be a successful tool for many image classification problems but has yet to be applied to carcass images. The aim of this study was to train DL models to predict carcass cut yields and compare predictions to more standard machine learning (ML) methods. Three approaches were undertaken to predict the grouped carcass cut yields of Grilling cuts and Roasting cuts from a large dataset of 54,598 and 69,246 animals respectively. The approaches taken were (1) animal phenotypic data used as features for a range of ML algorithms, (2) carcass images used to train Convolutional …
Localization Of Kisspeptin, Nkb, And Nk3r In The Hypothalamus Of Gilts Treated With The Progestin Altrenogest,
2021
West Virginia University
Localization Of Kisspeptin, Nkb, And Nk3r In The Hypothalamus Of Gilts Treated With The Progestin Altrenogest, Ashley N. Lindo, Jennifer F. Thorson, Michelle N. Bedenbaugh, Richard B. Mccosh, Justin A. Lopez, Samantha A. Young, Lanny J. Meadows, Elizabeth C. Bowdridge, Chrysanthi Fergani, Bradley A. Freking, Michael N. Lehman, Stanley M. Hileman, Clay A. Lents
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Mechanisms in the brain controlling secretion of gonadotropin hormones in pigs, particularly luteinizing hormone (LH), are poorly understood. Kisspeptin is a potent LH stimulant that is essential for fertility in many species, including pigs. Neurokinin B (NKB) acting through neurokinin 3 receptor (NK3R) is involved in kisspeptin-stimulated LH release, but organization of NKB and NK3R within the porcine hypothalamus is unknown. Hypothalamic tissue from ovariectomized (OVX) gilts was used to determine the distribution of immunoreactive kisspeptin, NKB, and NK3R cells in the arcuate nucleus (ARC). Almost all kisspeptin neurons coexpressed NKB in the porcine ARC. Immunostaining for NK3R was distributed …
Relationship Of Molecular Breeding Value For Beef Tenderness With Heifer Traits Through Weaning Of Their First Calf,
2021
Roman L. Hruska US Meat Animal Research Center
Relationship Of Molecular Breeding Value For Beef Tenderness With Heifer Traits Through Weaning Of Their First Calf, Robert A. Cushman, Gary L. Bennett, Richard G. Tait, Anthony K. Mcneel, Eduardo Casas, Timothy P.L. Smith, Harvey C. Freetly
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Polymorphisms in μ-calpain (CAPN1) that beneficially associate with beef tenderness are reported to antagonistically associate with calving day in beef heifers and post-partum interval to estrus in beef cows. We, therefore, hypothesized that a molecular breeding value for slice shear force, calculated based on CAPN1 and calpastatin (CAST) genotypes, would demonstrate an antagonistic relationship between genomically predicted slice shear force and ordinal calving date in replacement beef heifers. A secondary objective of this study was to evaluate the association of a polymorphism in diacylglycerol O-acyltransferase (DGAT1) with reproductive traits in beef heifers. One hundred eighty-seven MARC III heifers (¼ Angus, …
Validation Of High-Resolution Melting Assays For The Detection Of Virulent Strains Of Escherichia Coli O26 And O111 In Beef And Pork Enrichment Broths,
2021
Florida State University
Validation Of High-Resolution Melting Assays For The Detection Of Virulent Strains Of Escherichia Coli O26 And O111 In Beef And Pork Enrichment Broths, Frank J. Velez, Joseph M. Bosilevac, Prashant Singh
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Extensive validation of diagnostic assays using widely collected surveillance samples is critical for developing pathogen detection assays. The detection of potentially virulent E. coli strains is critical to the red meat industry. We previously developed two high-resolution melting (HRM) assays for detecting potentially virulent and avirulent E. coli O26 and O111 strains. Assays were validated using enriched beef (n = 36) and pork (n = 36) samples collected as part of a U.S. federal regulatory surveillance program. Data from this study showed more than 90% sensitivity and specificity for both the HRM assays, demonstrating suitability for the red meat industry …
Genomic Analysis Of Shiga Toxin-Containing Escherichia Coli O157:H7 Isolated From Argentinean Cattle,
2021
Instituto Nacional de Tecnologia Agropecuaria Buenos Aires
Genomic Analysis Of Shiga Toxin-Containing Escherichia Coli O157:H7 Isolated From Argentinean Cattle, Ariel Amadio, James L. Bono, Matías Irazoqui, Mariano Larzábal, Wanderson Marques Da Silva, María Florencia Eberhardt, Nahuel A. Riviere, David Gally, Shannon D. Manning, Angel Cataldi
Roman L. Hruska U.S. Meat Animal Research Center: Reports
Cattle are the main reservoir of Enterohemorrhagic Escherichia coli (EHEC), with O157:H7 the distinctive serotype. EHEC is the main causative agent of a severe systemic disease, Hemolytic Uremic Syndrome (HUS). Argentina has the highest pediatric HUS incidence worldwide with 12–14 cases per 100,000 children. Herein, we assessed the genomes of EHEC O157:H7 isolates recovered from cattle in the humid Pampas of Argentina. According to phylogenetic studies, EHEC O157 can be divided into clades. Clade 8 strains that were classified as hypervirulent. Most of the strains of this clade have a Shiga toxin stx2a-stx2c genotype. To better understand the molecular bases …
Heat Stress And Reproduction In Beef Cattle,
2021
Utah State University
Heat Stress And Reproduction In Beef Cattle, Reganne K. Briggs, Kerry A. Rood
All Current Publications
Reproduction could be considered the most important production trait on a cow-calf operation. Economic outputs are sustained when cattle rebreed and calve every year in a timely manner. However, when cattle are unable to rebreed efficiently, profits may decrease for producers. It is well known that heat stress can negatively impact reproduction in cattle (Jordan, 2003). The Intermountain West has been impacted by drought and increasing temperatures, both of which can impact reproduction rates in cattle. This fact sheet helps producers understand the consequences of heat stress on cattle reproduction and how they can manage reproduction during increasing temperatures.
Characterisation Of Early Positive Mcr‐1 Resistance Gene And Plasmidome In Escherichia Coli Pathogenic Strains Associated With Variable Phylogroups Under Colistin Selection,
2021
University College Dublin
Characterisation Of Early Positive Mcr‐1 Resistance Gene And Plasmidome In Escherichia Coli Pathogenic Strains Associated With Variable Phylogroups Under Colistin Selection, Guerrino Macori, Scott V. Nguyen, Ankita Naithani, Daniel Hurley, Li Bai, Farid El Garch, Frédérique Woehrlé, Christine Miossec, Benjamin Roques, Peadar O’Gaora, James L. Bono, Séamus Fanning
Roman L. Hruska U.S. Meat Animal Research Center: Reports
An antibiotic susceptibility monitoring programme was conducted from 2004 to 2010, re-sulting in a collection of 143 Escherichia coli cultured from bovine faecal samples (diarrhoea) and milk‐aliquots (mastitis). The isolates were subjected to whole‐genome sequencing and were distrib-uted in phylogroups A, B1, B2, C, D, E, and G with no correlation for particular genotypes with pathotypes. In fact, the population structure showed that the strains belonging to the different phy-logroups matched broadly to ST complexes; however, the isolates are randomly associated with the diseases, highlighting the necessity to investigate the virulence factors more accurately in order to identify the mechanisms …
Molecular Characterization Of Trypanosoma Vivax In Tsetse Flies Confirms The Presence Of The Virulent Tvv4 Genotype In Kenya: Potential Implications For The Control Of Trypanosomiasis In Shimba Hills,
2021
International Centre of Insect Physiology and Ecology Nairobi
Molecular Characterization Of Trypanosoma Vivax In Tsetse Flies Confirms The Presence Of The Virulent Tvv4 Genotype In Kenya: Potential Implications For The Control Of Trypanosomiasis In Shimba Hills, Faith I. Ebhodaghe, Armanda D.S. Bastos, Kevin O. Kidambasi, Shewit Kalayou, Daniel K. Masiga, Michael N. Okal
All Peer-Reviewed Publications
Trypanosoma vivax is a vector-borne protozoan parasite of livestock endemic to Africa and South America. To date, fifteen genotypes of the parasite have been described in vertebrate and insect hosts in East Africa. However, information regarding T. vivax diversity remains limited in many endemic countries in the sub-region, including Kenya. Such information could deepen insight into the local epidemiology of animal trypanosomiasis in Shimba Hills, a wildlife area in southeast Kenya where T. vivax is endemic and infects livestock. We employed two-gene conventional-PCR-sequencing and phylogenetic analysis to characterize T. vivax genotypes in tsetse flies collected between November 2018 and September …
