Biogeochemistry Commons^™

Fecal Microbe Distribution And Abundance Used As A Possible Proxy For Nutrient Source Identification In Eutrophic Wilgreen Lake, Madison County, Kentucky, Theresa A. Aguiar, Walter S. Borowski

EKU Faculty and Staff Scholarship

Wilgreen Lake is a eutrophic lake that has been listed on the EPA’s 303d list as nutrient impaired. Potential sources of this impairment are from humans, cattle manure and fertilizers. We suspect that the majority of nutrients originate from human sources. As a possible proxy for nutrient input, we test our hypothesis by examining fecal microbe distribution and abundance in the lake.

We took water samples at 19 sampling locations on 4 occasions. Sampling spanned 26 June to 15 August with the last 3 sampling events occurring at roughly two-week intervals. These samples were then processed using IDEXX methods, which …

Environmental Controls On The Landscape-Scale Biogeography Of Stream Bacterial Communities, Noah Fierer, Jennifer L. Morse, Sean T. Berthrong, Emily S. Bernhardt, Robert B. Jackson

Environmental Science and Management Faculty Publications and Presentations

We determined the biogeographical distributions of stream bacteria and the biogeochemical factors that best explained heterogeneity for 23 locations within the Hubbard Brook watershed, a 3000-ha forested watershed in New Hampshire, USA. Our goal was to assess the factor, or set of factors, responsible for generating the biogeographical patterns exhibited by microorganisms at the landscape scale. We used DNA fingerprinting to characterize bacteria inhabiting fine benthic organic matter (FBOM) because of their important influence on stream nutrient dynamics. Across the watershed, streams of similar pH had similar FBOM bacterial communities. Streamwater pH was the single variable most strongly correlated with …

The Observation, Modeling, And Retrieval Of Bio-Optical Properties For Coastal Waters Of The Southern Chesapeake Bay, Xiaoju Pan

OES Theses and Dissertations

The primary purpose of this study was to develop an inverse method to retrieve the inherent optical properties (IOPs) and biogeochemical parameters (e.g. chlorophyll a concentration and salinity) appropriate to monitor the water quality and biogeochemical processes from remote sensing of the coastal waters in the southern Chesapeake Bay and coastal Mid-Atlantic Bight region (MAB) dominated by Case 2 waters. For this purpose, knowledge of the relationship between remote sensing reflectance (R_rs) and IOPs and the effect from bottom reflectance on R_rs, is required.

A substantial investigation of IOPs has been conducted for the coastal …

Effects Of Elevated Atmospheric Co2 On Root Dynamics, Biomass And Architecture In A Scrub-Oak Ecosystem At Kennedy Space Center, Florida, Daniel Benjamin Stover

Biological Sciences Theses & Dissertations

A major gap in whole-plant ecology lies with our understanding of root system growth, function and distribution. Large belowground structures, in addition to fine roots, are of particular interest because of their role in carbon sequestration. Non-destructive methods, including ground-penetrating radar (GPR) and minirhizotron observation tubes, were used to investigate effects of elevated CO₂ on root biomass, dynamics (productivity, mortality, and turnover), root persistence and architecture in a fire dominated scrub-oak ecosystem. Open-top chambers have been exposed to elevated atmospheric CO₂ for the past eleven years at Kennedy Space Center, Florida. No significant sustained CO₂ treatment effects …

Seagrass-Mediated Carbonate Dissolution And Early Diagenesis In Bahamas Bank Sediments, Xinping Hu

OES Theses and Dissertations

This dissertation presents the results of studies examining the role that seagrasses play in carbonate dissolution and early diagenesis of Bahamas Bank sediments. Three aspects of this problem are addressed: (1) stable carbon isotopes as an indicator of early diagenesis of carbonates, using results of a field study; (2) carbonate dissolution stoichiometry and carbonate reprecipitation, using the results from closed-system sediment incubation studies; (3) carbonate dissolution and reprecipitation across the broader Bahamas Bank. In Chapter II, I examined δ¹³C in the dissolved inorganic carbon (DIC) of sediments with various degrees of seagrass densities. In low seagrass density and …

Preliminary Results Of A Fecal Microbe Survey In An Eutrophic Lake, Wilgreen Lake, Madison County, Kentucky, Walter S. Borowski, Michael S. Albright

EKU Faculty and Staff Scholarship

Wilgreen Lake is a small (~14 mi²) eutrophic lake formed by damming several tributary streams to Silver Creek, Madison County, Kentucky. The lake receives runoff from industrial and urban areas (Richmond) that comprise ~10% of the total watershed area; most runoff is from cattle pasture or human developments encircling the lake. Present and past developments are on septic systems, and effluent from these systems is known qualitatively to seep into lake waters.

Our research group is currently conducting a study of the lake in order to identify major nutrient sources, and one possible tracer method is to quantitatively …

Sulfur Geochemistry And Diagenesis In A Gas Hydrate Terrane, Cascadia Margin, Offshore Oregon: Role Of Anaerobic Methane Oxidation, David Deigert, Walter S. Borowski

EKU Faculty and Staff Scholarship

We present sulfide mineral data from south Hydrate Ridge located in a gas hydrate terrane, offshore Oregon. Sulfide sulfur concentration and the isotopic composition of sulfur (d³⁴S) in authigenic sulfide minerals are analyzed from sediment samples collected on Ocean Drilling Project (ODP) Leg 204. Shallow sediment samples (<25 >mbsf) assess the relative importance of anaerobic methane oxidation (AMO) as a biogeochemical process, both here and at the Blake Ridge, another well known gas hydrate terrane offshore southeastern United States. Deep samples (>25 mbsf) are used to evaluate sulfur diagenesis and its controls from early Pleistocene to the …

Plant Assemblage Structure On Barrier Island ‘Pimple’ Dunes At The Virginia Coast Reserve Long-Term Ecological Research Site, Brett A. Mcmillan

Biological Sciences Theses & Dissertations

The habitats at the VCR LTER that were the focus of the current study are the Hog Island and Parramore Island 'pimples', small, rounded dunes forming along main dune ridges of the barrier islands. There are distinct plant assemblage zones found on pimples, although most of these dunes are 10–20 m in diameter. Hypotheses of the study were that fresh water availability was a main determinant of differences between assemblages and that pimple size and location would influence diversity and assemblage structure. Research goals were (1) to describe the plant assemblages on pimples, (2) to relate edaphic and geomorphological factors …

The Fate Of Nitrogren Fixed By Diazotrophs In The Ocean, Margaret R. Mulholland

OES Faculty Publications

While we now know that N₂ fixation is a significant source of new nitrogen (N) in the marine environment, little is known about the fate of this N (and associated C), despite the importance of diazotrophs to global carbon and nutrient cycles. Specifically, does N fixed during N₂ fixation fuel autotrophic or heterotrophic growth and thus facilitate carbon (C) export from the euphotic zone, or does it contribute primarily to bacterial productivity and respiration in the euphotic zone? For Trichodesmium, the diazotroph we know the most about, the transfer of recently fixed N₂ (and C) appears …

Co2 Control Of Trichodesmium N-2 Fixation, Photosynthesis, Growth Rates, And Elemental Ratios: Implications For Past, Present, And Future Ocean Biogeochemistry, D. A. Hutchins, F.-X. Fu, Y. Zhang, M. E. Warner, Y. Feng, K. Portune, P. W. Bernhardt, M. R. Mulholland

OES Faculty Publications

Diazotrophic marine cyanobacteria in the genus Trichodesmium contribute a large fraction of the new nitrogen entering the oligotrophic oceans, but little is known about how they respond to shifts in global change variables such as carbon dioxide (CO₂) and temperature. We compared Trichodesmium dinitrogen (N₂) and CO₂ fixation rates during steady-state growth under past, current, and future CO₂ scenarios, and at two relevant temperatures. At projected CO₂ levels of year 2100 (76 Pa, 750 ppm), N₂ fixation rates of Pacific and Atlantic isolates increased 35-100%, and CO₂ fixation rates increased 15-128% …

Light Environment And Seasonal Dynamics Of Microalgae In The Annual Sea Ice At Terra Nova Bay, Ross Sea, Antarctica, L. Lazzara, I. Nardello, C. Ermanni, O. Mangoni, V. Saggiomo

OES Faculty Publications

We investigated the physical conditions of the Spring pack ice environment at Terra Nova Bay to understand their influence on the structure and physiology of sympagic microalgae. Bio-optical methods were used to study the availability and spectral quality of solar radiation, both inside and underneath the ice cover. Pack ice thickness was around 2.5 m, with a temperature between -2 and -7°C. On average, only 1.4% of surface PAR penetrated to the bottom ice and less than 0.6% below platelet ice level. Surface UV-B radiation under the bottom ice was 0.2-0.4%. Biomass concentrations up to 2400 mg Chl a m- …

Impact Of Anthropogenic Combustion Emissions On The Fractional Solubility Of Aeroosol Iron: Evidence From The Sargasso Sea, Peter N. Sedwick, Edward R. Sholkovitz, Thomas M. Church

OES Faculty Publications

We report empirical estimates of the fractional solubility of aerosol iron over the Sargasso Sea during periods characterized by high concentrations of Saharan dust (summer 2003) and by low concentrations of aerosols in North American/maritime North Atlantic air masses (spring 2004 and early summer 2004). We observed a strong inverse relationship between the operational solubility of aerosol iron (defined using a flow-through deionized-water leaching protocol) and the total concentration of aerosol iron, whereby the operational solubility of aerosol iron was elevated when total aerosol iron loadings were low. This relationship is consistent with source-dependent differences in the solubility characteristics of …

Simulations Of Phytoplankton Species And Carbon Production In The Equatorial Pacific Ocean 2. Effects Of Physical And Biogeochemical Processes, Baris Salihoglu, Eileen E. Hofmann

CCPO Publications

A one-dimensional multi-component lower trophic level ecosystem model that includes detailed algal physiology is used to investigate the response of phytoplankton community and carbon production and export to variations in physical and biochemical processes in the Cold Tongue region of the equatorial Pacific Ocean at ON, 140W. Results show that high-frequency variability in vertical advection and temperature is an important mechanism driving the carbon export. Filtering out low frequency physical forcing results in a 30% increase in primary production and dominance of high-light adapted Prochlorococcus and autotrophic eukaryotes. Sensitivity studies show that iron availability is the primary control on carbon …

Assessment Of Skill And Portability In Regional Marine Biogeochemical Models: Role Of Multiple Planktonic Groups, Marjorie A. M. Friedrichs, Jeffery A. Dusenberry, Laurence A. Anderson, Robert A. Armstrong, Fei Chai, James R. Christian, Scott C. Doney, John Dunne, Masahiko Fujii, Jerry D. Wiggert

CCPO Publications

[1] Application of biogeochemical models to the study of marine ecosystems is pervasive, yet objective quantification of these models' performance is rare. Here, 12 lower trophic level models of varying complexity are objectively assessed in two distinct regions (equatorial Pacific and Arabian Sea). Each model was run within an identical one-dimensional physical framework. A consistent variational adjoint implementation assimilating chlorophyll-a, nitrate, export, and primary productivity was applied and the same metrics were used to assess model skill. Experiments were performed in which data were assimilated from each site individually and from both sites simultaneously. A cross-validation experiment was also conducted …

Preliminary Results Of A Nutrient Source Study In Wilgreen Lake, Madison County, Kentucky, Walter S. Borowski, Erin C. Jolly

EKU Faculty and Staff Scholarship

Wilgreen Lake (Madison County, Kentucky) is an eutrophic lake formed by damming Taylor Fork, part of the Silver Creek watershed. Two principal tributaries drain urban areas of the city of Richmond, agricultural land typified by cattle grazing, and a high-density residential area using septic systems. The lake is “nutrient impaired,” so it is likely that anthropogenic nutrient loading is affecting water quality. Our study aims to first characterize the physical characteristics and water quality of the lake (2006), and then determine the specific proportion of nutrient inputs (2007) to the lake with the aim of remediating any possible degradation of …

A Preliminary Study Of Sulfide Mineral Formation In Methane-Rich, Marine Sediments Associated With Anaerobic Methane Oxidation, Cascadia Continental Margin, Offshore Oregon, David Deigert, Walter S. Borowski

EKU Faculty and Staff Scholarship

Within gas hydrate settings, sulfide mineralization in marine sediments is likely controlled by two microbially-mediated, sulfate-depleting processes: anaerobic methane oxidation (AMO) and sulfate reduction. If large amounts of methane are delivered to the sulfate-methane interface (SMI), predominantly by diffusion, larger amounts of solid sulfide sulfur should occur there as dissolved sulfide combines with iron, forming an authigenic precipitate. We measure the amount of diagenetic sulfide sulfur at three locations in the Hydrate Ridge vicinity by extracting the bulk sedimentary sulfide-phase minerals (S^o, FeS, and FeS₂) through chromium reduction, precipitating sulfide sulfur as silver sulfide, and gravimetrically …

Data Report: Dissolved Sulfide Concentration And Sulfur Isotopic Composition Of Sulfide And Sulfate In Pore Waters, Odp Leg 204, Hydrate Ridge And Vicinity, Cascadia Margin, Offshore Oregon, Walter S. Borowski

EKU Faculty and Staff Scholarship

We report dissolved sulfide sulfur concentrations and the sulfur isotopic composition of dissolved sulfate and sulfide in pore waters from sediments collected during Ocean Drilling Program Leg 204. Porewater sulfate is depleted rapidly as the depth to the sulfate/methane interface (SMI) occurs between 4.5 and 11 meters below seafloor at flank and basin locations. Dissolved sulfide concentration reaches values as high as 11.3 mM in Hole 1251E. Otherwise, peak sulfide concentrations lie between 3.2 and 6.1 mM and occur immediately above the SMI. The sulfur isotopic composition of interstitial sulfate generally becomes enriched in 34 S with increasing sediment depth. …

Marine And Freshwater Cyanophages In A Laurentian Great Lake: Evidence From Infectivity Assays And Molecular Analyses Of G20 Genes, Steven W. Wilhelm, Matthew J. Carberry, Melanie L. Eldridge, Leo Poorvin, Matthew A. Saxton, Martina A. Doblin

OES Faculty Publications

While it is well established that viruses play an important role in the structure of marine microbial food webs, few studies have directly addressed their role in large lake systems. As part of an ongoing study of the microbial ecology of Lake Erie, we have examined the distribution and diversity of viruses in this system. One surprising result has been the pervasive distribution of cyanophages that infect the marine cyanobacterial isolate Synechococcus sp. strain WH7803. Viruses that lytically infect this cyanobacterium were identified throughout the western basin of Lake Erie, as well as in locations within the central and eastern …

Biogeochemistry Of Arsenic And Antimony In The North Pacific Ocean, Gregory A. Cutter, Lynda S. Cutter

OES Faculty Publications

The biogeochemical cycles of the metalloid elements arsenic and antimony were examined along a 15,000 km surface water transect and at 9 vertical profile stations in the western North Pacific Ocean as part of the 2002 IOC Contaminant Baseline Survey. Results show that the speciation of dissolved arsenic (As III, As V, and methylated As) was subtly controlled by the arsenate (AsV)/phosphate ratio. An additional fraction of presumed organic arsenic previously reported in coastal waters was also present (~15% of the total As) in oceanic surface waters. Dissolved inorganic antimony displayed mildly scavenged behavior that was confirmed by correlations with …

Hydrographic Observations During The 2002 Ioc Contaminant Baseline Survey In The Western Pacific Ocean, C. I. Measures, Greg A. Cutter, W. M. Landing, R. T. Powell

OES Faculty Publications

The 2002 IOC Contaminant Baseline Survey in the western Pacific Ocean was the fourth in a series of cruises intended to establish the contemporary concentrations of trace elements and other materials in the major water masses of the ocean and to illuminate the pathways by which materials delivered to the surface ocean are incorporated in the subsurface waters. The expedition occupied 9 vertical profile stations encompassing the subtropical and subarctic gyre of the western North Pacific. In addition, underway surface water samples were collected during transits between the stations. This paper uses the temperature, salinity, nutrient, oxygen, and chlorophyll data …

A Geologic Record Of Competing Sulfate-Depletion Processes Within Continental-Rise Sediments Overlying Methane Gas Hydrates Of The Blake Ridge Region (Continental Rise, Offshore Southeastern United States), Walter S. Borowski, Kathryn G. Takacs, Matthew K. Thompson

EKU Faculty and Staff Scholarship

Geochemical signals locked within sediments and sedimentary rocks record geochemical processes through geologic time. Sulfide minerals (elemental sulfur, iron monosulfides, and pyrite) are formed within marine sediments as dissolved sulfide is produced by various geochemical processes, which include sulfate reduction and anaerobic methane oxidation (AMO). The concentration and sulfur isotopic composition (d³⁴S) of sulfide minerals gives clues about the relative importance of these competing geochemical processes, and consequently about sedimentation rates and upward methane transport.

Marine sediments of the Blake Ridge(offshore South Carolina and Georgia) contain sulfide minerals that point to AMO as an important diagenetic process both …

A Preliminary Comparison Of The Sulfur Geochemistry Between Two Gas Hydrate Terranes, Michael D. Spicer, Walter S. Borowski

EKU Faculty and Staff Scholarship

We compare the authigenic sulfide mineral geochemistry of two, different gas hydrate terranes: the accretionary wedge of the Cascadia continental margin (offshore Oregon) and the passive margin of the Blake Ridge region (offshore southeastern US). We expect diagenetic processes effecting sulfide mineral formation (elemental sulfur, iron monosulfides, and pyrite) within these sediments to respond to differing geologic conditions at each setting. In both settings, methane diffuses upward from gas hydrates to the methane-sulfate interface (SMI), where it is consumed by reaction with sulfate during anaerobic methane oxidation (AMO). This microbially-mediated, diagenetic process produces an interstitial environment conducive to authigenic sulfide …

Effects Of Elevated Atmospheric Co₂ On Scrub-Oak Root Carbon Pools And Soil Microbial Processes, Alisha Lea Pagel Brown

Biological Sciences Theses & Dissertations

The levels of atmospheric CO₂ are rising and this affects the growth of plants and the ecosystems in which they reside. Plants take up additional C from the atmosphere and have potential to sequester C in the soil. I investigated the sequestration of C belowground and the microbial processes that control C retention in the soil. This study was conducted in a Florida scrub-oak ecosystem, where CO₂ levels have been elevated to twice ambient since 1996 in open top chambers. There were eight replicates of ambient CO₂ chambers and eight replicates of twice-ambient CO₂ levels. The …

Evaluating The Biogeochemical Cycle Of Selenium In San Francisco Bay Through Modeling, Shannon L. Meseck, Gregory A. Cutter

OES Faculty Publications

A biogeochemical model was developed to simulate salinity, total suspended material, phytoplankton biomass, dissolved selenium concentrations (selenite, selenate, and organic selenide), and particulate selenium concentrations (selenite + selenate, elemental selenium, and organic selenide) in the San Francisco Bay estuary. Model-generated estuarine profiles of total dissolved selenium reproduced observed estuarine profiles at a confidence interval of 91- 99% for 8 different years under various environmental conditions. The model accurately reproduced the observed dissolved speciation at confidence intervals of 81-98% for selenite, 72-91% for selenate, and 60-96% for organic selenide. For particulate selenium, model-simulated estuarine profiles duplicated the observed behavior of total …

Iron In Ice Cores From Law Dome: A Record Of Atmospheric Iron Deposition For Maritime East Antarctica During The Holocene And Last Glacial Maximum, Ross Edwards, Peter N. Sedwick, Vin Morgan, Claude Boutron

OES Faculty Publications

Total dissolvable iron (TDFe) was measured in sections of ice cores recovered from Law Dome on the coast of Wilkes Land, East Antarctica. These samples include ice dating from the Last Glacial Maximum (LGM), the Last Deglaciation, and the early and mid Holocene as well as samples from the Anthropocene that have been dated with seasonal to annual resolution. Combining our TDFe concentration data with estimates of the ice accumulation rate, we estimate the atmospheric iron deposition for Law Dome and the adjacent Southern Ocean during these periods. Our results indicate that the atmospheric iron deposition flux to this region …

Nitrogen Fixation And Release Of Fixed Nitrogen By Trichodesmium Spp. In The Gulf Of Mexico, Margaret R. Mulholland, Peter W. Bernhardt, Cynthia A. Heil, Deborah A. Bronk, Judith M. O'Neil

OES Faculty Publications

During a 3-yr study in the Gulf of Mexico, we measured dinitrogen (N₂) fixation and nitrogen (N) release by Trichodesmium and compared these rates with water column N demand and the estimated N necessary to support blooms of Karenia brevis, a toxic dinoflagellate that severely affects the West Florida shelf. Net and gross N₂ fixation rates were compared in simultaneous incubations using ¹⁵N₂ uptake and acetylene reduction, respectively. The difference between net and gross N₂ fixation is assumed to be an approximation of the rate of N release. Results demonstrate that Trichodesmium in …

Pelagic Functional Group Modeling: Progress, Challenges And Prospects, Raleigh R. Hood, Edward A. Laws, Robert A. Armstrong, Nicholas R. Bates, Christopher W. Brown, Craig A. Carlson, Fei Chai, Scott C. Doney, Paul G. Falkowski, Richard A. Feely, Marjorie A. M. Friedrichs

CCPO Publications

In this paper, we review the state of the art and major challenges in current efforts to incorporate biogeochemical functional groups into models that can be applied on basin-wide and global scales, with an emphasis on models that might ultimately be used to predict how biogeochemical cycles in the ocean will respond to global warming. We define the term "biogeochemical functional group" to refer to groups of organisms that mediate specific chemical reactions in the ocean. Thus, according to this definition, "functional groups" have no phylogenetic meaning-these are composed of many different species with common biogeochemical functions.

Substantial progress has …

A Geologic Record Of Methane Consumption Associated With Methane Gas Hydrates At Blake Ridge Region (Continental Rise, Offshore Southeastern United States), Walter S. Borowski, Kathryn G. Takacs, Matthew K. Thompson

EKU Faculty and Staff Scholarship

Geochemical signals locked within sedimentary rocks are a record of earth processes. Sulfide minerals (elemental sulfur, iron monosulfides, and pyrite) are formed within marine sediments by several different geochemical processes mediated by microbes. Investigating the concentration and sulfur isotopic composition (d³⁴S) of sulfide minerals gives clues about the relative importance of these competing geochemical processes.

Marine sediments of the Blake Ridge(offshore South Carolina and Georgia) contain sulfide minerals that point to anaerobic methane oxidation (AMO) as an important diagenetic process both today and in the recent geological past (Miocene). At the present-day methane-sulfate interface, upward-diffusing methane is consumed …

Development And Application Of A Gg-Irms Reductive Pyrolysis Reactor Interface For The Δ34S Determination Of Sulfur In Individual Organic Compounds, N. Deborah Hewlett

Chemistry & Biochemistry Theses & Dissertations

The incorporation of sulfur into sedimentary organic matter is an important aspect of organic carbon preservation. A better understanding of the sulfur cycle and the formation of organo-sulfur compounds are necessary if we are to better understand the interaction of biogeochemical cycles of C, N, O, H. and S. Currently, the determination of ³⁴S/³²S in organic matter is limited to bulk organic samples. The sulfur isotopic analysis of individual organo-sulfur compounds within the sediments should allow for a more complete understanding of the sulfur cycle and the processes which lead to sulfur incorporation into organic matter. This …

Sulfide Mineralization In Deep-Water Marine Sediments Related To Methane Transport, Methane Consumption, And Methane Gas Hydrates, Matthew K. Thompson, Walter S. Borowski, Charles K. Paull, William Ussler Iii

EKU Faculty and Staff Scholarship

Patterns of sulfide sulfur concentration and sulfur isotopic composition (d³⁴ S) are perhaps related to upward methane transport, especially in sediments underlain by methane gas hydrate deposits. Increased methane delivery augments the effect of anaerobic methane oxidation (AMO) occurring at the sulfate-methane interface (SMI). Sulfate and methane co-consumption results in production of dissolved sulfide at the interface that is eventually sequestered within sulfide minerals (elemental sulfur, iron monosulfide, pyrite).

We examine the sediments of two piston cores collected over the Blake Ridge gas hydrate deposits (offshore southeastern United States) by extracting total sedimentary sulfide using chromium reduction. We use …