Biogeochemistry Commons^™

Phosphate Speleothems In Caves Developed In Iron Ores And Laterites Of The Carajás Mineral Province (Brazil) And A New Occurrence Of Spheniscidite, Alan R.L. Albuquerque, Rômulo S. Angélica, Daniele F. Gonçalves, Simone P.A. Paz

International Journal of Speleology

The Carajás Mineral Province has one of the largest concentrations of caves in Brazil, and its iron ore is among the country’s main exports. As a result of iron ore intense extraction, new environmental policies have been implemented. In an attempt to balance economic activity and environmental conservation, an inventory and a relevance-based classification of caves were implemented in 2008 as criteria for environmental licensing of mining ventures. This implementation motivated the present study of phosphate speleothems in Carajás’ caves developed in ferriferous rocks. The objectives of this study are to describe the phosphate minerals and their formation processes based …

Mapping Soil Organic Carbon (Soc) In A Semi-Arid Mountainous Watershed Using Variables From Hyperspectral, Lidar And Traditional Datasets, Ryan Matthew Will

Boise State University Theses and Dissertations

Quantifying soil organic carbon (SOC) in complex terrain is challenging due to its high spatial variability. Generally, limited discrete observations of SOC data are used to develop spatially distributed maps of SOC by developing quantitative relationships between SOC and available spatially distributed variables. In many ecosystems, remotely sensed information on aboveground vegetation can be used to predict belowground carbon stocks. In this research, we developed maps of SOC across a semi-arid watershed based on discrete field observations and modeling using a suite of variables inclusive of hyperspectral and lidar datasets; these observations provide insights into the controls on soil carbon …

Floodplain Impacts On Water Quality: A Case Study In Southern Louisiana, Emily Delduco

LSU Master's Theses

The quantity and quality of dissolved carbon delivered to coastal margins by rivers is an important component of global carbon cycling. The Atchafalaya River (AR) discharges ~25% of the flow of the Mississippi River (MR) and the total flow of the Red River (RR) into the Gulf of Mexico (GoM) annually while flowing through the largest bottomland swamp in North America. This provides a unique opportunity to study floodplain impacts on dissolved carbon processes in a large river system. The research aimed to: (1) determine DIC and DOC transport and processing by a river swamp basin under varied seasons and …

Assessing The Periodic Groundwater Flow Conditions Of A Perched Aquifer System In The Daniel Boone National Forest, Ethan Sweet

Posters-at-the-Capitol

Assessing the Periodic Groundwater Flow Conditions of a Perched Aquifer System in the Daniel Boone National Forest

Ethan Sweet and Jonathan Malzone

Eastern Kentucky University, Department of Geosciences

Natural ephemeral wetlands situated among the ridge-tops in the Daniel Boone National Forest serve as reservoirs that recharge a shallow groundwater system. Unique interactions between surface and groundwater in these isolated systems provide substantial support for the native ecosystem, serving as a breeding ground for amphibians and as source water for vegetation—especially in periods of drought. Currently it is not understood how groundwater could provide regional biodiversity, a drought buffer, or a …

Mediation Of Eutrophication Of Surface And Subsurface Water From Non-Point Sources: Nutrient Monitoring At Meadowbrook Farm (Madison County, Kentucky), Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Non-point sources from various human activities such as farming have replaced industrial point sources as contributors of many contaminants in surface and subsurface waters of the United States. Eastern Kentucky University’s Meadowbrook Farm (720 acres, ~2.9 km²; Madison County, Kentucky) is a teaching facility dedicated to improving farming techniques and discovering best practices for farm operations that include minimizing environmental impacts. Agricultural activities on the Farm contribute nutrients to the Muddy Creek (Kentucky River) watershed that promote eutrophication and degrade water quality. Farm management already uses protocols to mediate drainage of dissolved nitrogen off the Farm, but also …

Nutrient Contamination From Non-Point Sources: Dissolved Nitrate And Ammonium In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Reid E. Buskirk, Hunter R. Evans, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Agricultural activities often contaminate watersheds with excess nutrients leading to poor water quality and eutrophication. We assayed dissolved nutrient levels in surface and subsurface waters of Eastern Kentucky University’s Meadowbrook Farm in order to assess levels of dissolved nutrients leaving its farmland and draining into the Muddy Creek watershed. The Farm raises both crops and livestock so that nutrient sources include fertilizer and manure. We sampled springs, runoff, and subsurface pipe drainage as well as Muddy Creek on six days from May to August 2016 under a variety of weather conditions. Using established, standard colorimetric methods, we measured nitrate (NO …

Nutrient Contamination From Non-Point Sources: Dissolved Phosphate In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Hunter R. Evans, Reid E. Buskirk, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Farms are non-point sources for nutrient contaminants that drain into watersheds and contribute to eutrophication and other environmental problems. Eastern Kentucky University’s Meadowbrook Farm raises both crops and livestock, causing dissolved phosphorus in the form of orthophosphate (PO₄^3-) from fertilizer and animal manure to enter surface and subsurface waters, eventually flowing into Muddy Creek, a tributary of the Kentucky River.

We sampled surface water, springs, and water from French drains that emanate from the farm, and also sampled Muddy Creek waters from May through August 2016. Typically, 1 to 2 days after sampling, we colorimetrically measured dissolved …

Patterns Of Nutrient Export For A Typical Non-Point Source, Meadowbrook Farm, Madison County, Kentucky, James Scott Winter, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Excess nutrients are found in watersheds originating from active farmland often causing poor water quality and eutrophication in natural waters. Use of fertilizer and animal husbandry can contaminate both surface water and groundwater. Eastern Kentucky University’s Meadowbrook Farm raises crops and livestock and is typical of farms that contribute excess nutrient contaminants to watersheds as non-point sources. An instrumented weir is positioned within a key sub-watershed of the Farm that empties into Muddy Creek, a tributary of the Kentucky River. This drainage is the largest outlet from the Farm that is representative of the Farm’s collective activities.

We measured flow …

Soil Carbon Cycling Proxies: Understanding Their Critical Role In Predicting Climate Change Feedbacks, Vanessa L. Bailey, Ben Bond-Lamberty, Kristen M. Deangelis, A. Stuart Grandy, Christine V. Hawkes, Kate Heckman, Kate Lajtha, Richard P. Phillips, Benjamin N. Sulman, Katherine E. O. Todd-Brown, Matthew D. Wallenstein

Faculty Publications

The complexity of processes and interactions that drive soil C dynamics necessitate the use of proxy variables to represent soil characteristics that cannot be directly measured (correlative proxies), or that aggregate information about multiple soil characteristics into one variable (integrative proxies). These proxies have proven useful for understanding the soil C cycle, which is highly variable in both space and time, and are now being used to make predictions of the fate and persistence of C under future climate scenarios. However, the C pools and processes that proxies represent must be thoughtfully considered in order to minimize uncertainties in empirical …

Fungal Community Homogenization, Shift In Dominant Trophic Guild, And Appearance Of Novel Taxa With Biotic Invasion, Mark A. Anthony, Serita D. Frey, Kristina A. Stinson

Faculty Publications

Invasion by non-native plants may fundamentally restructure the soil fungal community. The invasive plant, Alliaria petiolata, produces secondary compounds suppressive to mycorrhizal fungi and may therefore be expected to have generally negative effects on other components of the fungal community. Here, we compared fungal biomass, diversity, community composition, and the relative abundance of fungal trophic guilds, along with edaphic properties of soils collected from uninvaded and invaded plots across six temperate forests. Invaded plots were differentiated from uninvaded plots by lower variation in fungal community composition (beta diversity) and soil properties, higher fungal richness and community evenness (alpha diversity), and …

East African Weathering Dynamics Controlled By Vegetation-Climate Feedbacks, Sarah J. Ivory, Michael M. Mcglue, Geoffrey S. Ellis, Adam Boehlke, Anne-Marie Lézine, Annie Vincens, Andrew S. Cohen

Earth and Environmental Sciences Faculty Publications

Tropical weathering has important linkages to global biogeochemistry and landscape evolution in the East African rift. We disentangle the influences of climate and terrestrial vegetation on chemical weathering intensity and erosion at Lake Malawi using a long sediment record. Fossil pollen, microcharcoal, particle size, and mineralogy data affirm that the detrital clays accumulating in deep water within the lake are controlled by feedbacks between climate and hinterland forest composition. Particle-size patterns are also best explained by vegetation, through feedbacks with lake levels, wildfires, and erosion. We develop a new source-to-sink framework that links lacustrine sedimentation to hinterland vegetation in tropical …

Nitrogen And Carbon Isotopic Dynamics Of Subarctic Soils And Plants In Southern Yukon Territory And Its Implications For Paleoecological And Paleodietary Studies, Farnoush Tahmesabi, Fred J. Longstaffe, Grant Zazula, Bruce Bennett

Earth Sciences Publications

We examine here the carbon and nitrogen isotopic compositions of bulk soils (8 topsoil and 7 subsoils, including two soil profiles) and five different plant parts of 79 C₃ plants from two main functional groups: herbs and shrubs/subshrubs, from 18 different locations in grasslands of southern Yukon Territory, Canada (eastern shoreline of Kluane Lake and Whitehorse area). The Kluane Lake region in particular has been identified previously as an analogue for Late Pleistocene eastern Beringia. All topsoils have higher average total nitrogen δ¹⁵N and organic carbon δ¹³C than plants from the same sites with a …

Changes In Substrate Availability Drive Carbon Cycle Response To Chronic Warming, Grace Pold, A. Stuart Grandy, Jerry M. Melillo, Kristen M. Deangelis

Faculty Publications

As earth's climate continues to warm, it is important to understand how the capacity of terrestrial ecosystems to retain carbon (C) will be affected. We combined measurements of microbial activity with the concentration, quality, and physical accessibility of soil carbon to microorganisms to evaluate the mechanisms by which more than two decades of experimental warming has altered the carbon cycle in a Northeast US temperate deciduous forest. We found that concentrations of soil organic matter were reduced in both the organic and mineral soil horizons. The molecular composition of the carbon was altered in the mineral soil with significant reductions …

Revealing The Current Relationship Between Stream Acidification And Fish Species Richness: What Is The Status After Two Decades Of Recovery?, Patrick A. Harmon

Masters Theses, 2010-2019

Prior to limitations placed on atmospheric emission of sulfur dioxide, Shenandoah National Park streams were heavily impacted by acid deposition. Acidification of these streams resulted in a depletion of acid neutralizing capacity (ANC) and a loss of fish species diversity. Differences in bedrock composition of park watersheds produce variation in stream response to acidification such that siliciclastic watersheds provide the lowest ANC, basaltic-carbonate watersheds provide the highest ANC, and granitic watersheds provide an intermediate ANC. Previous results by Bulger et al. (1995) indicated a significant relationship between ANC and fish species richness in thirteen park streams, such that low ANC …

Summer Precipitation Occurrence Effect On Two Passerine Species In Thule, Greenland, Sara E. Baugh

Celebration of Learning

Climate change is occurring at a faster rate in the Arctic than the rest of the globe, causing temperature rises at twice the rate of the global average and increased summer precipitation in the form of rain. These precipitation events are predicted to affect migratory bird species that breed throughout the Arctic. Increased occurrence of heavy rainstorms indirectly affect bird populations by impacting distribution and abundance of food supply, and directly by increasing mortality rates of juveniles. Studies conducted on bird species throughout the low Arctic regions; have shown that it is not the total precipitation of a breeding season …

The Effects Of Urbanization On Nitrogen Processing In Urban Streams, Peter Francissen, Dr. Kevin Geedey, Dr. Michael Reisner

Celebration of Learning

Urban stream syndrome is described as the deterioration of stream health in an urbanized watershed and is associated with the loss of ecosystem services, which in turn degrades downstream environments. One key symptom of the urban stream syndrome is reduced processing of inorganic nitrogen. Previous research suggests that as urbanization increases and water quality decreases, the uptake length (Sw) of inorganic N increases. This indicates that the stream is increasing the export of N downstream compared to in situ incorporation of N into the ecosystem. We measured uptake length (Sw) of NO3, using a pulse addition method, along 9 different …

Riparian Buffered Sinkholes In The Blue River Watershed, Colin Copler

Undergraduate Theses

Riparian vegetation along streams has many positive effects on water quality and macroinvertebrate communities, especially in agricultural areas. Some of these effects include erosion prevention, pollutant removal, and lower summer water temperatures. There has been much research done examining the link between these riparian areas and streams; however, riparian vegetation is understudied in karst areas. Karst is a geologic formation that is composed of limestone, which dissolves in groundwater, forming sinkholes. Thus, the question this paper seeks to investigate is does riparian vegetation around sinkholes in a karst plain influence water quality within a watershed? Water quality, land cover, and …

Catalyzed Synthesis Of Zinc Clays By Prebiotic Central Metabolites, Marcelo I. Guzman, Ruixin Zhou, Kaustuv Basu, Hyman Hartman, Christopher J. Matocha, S. Kelly Sears, Hajatollah Vali

Chemistry Faculty Publications

How primordial metabolic networks such as the reverse tricarboxylic acid (rTCA) cycle and clay mineral catalysts coevolved remains a mystery in the puzzle to understand the origin of life. While prebiotic reactions from the rTCA cycle were accomplished via photochemistry on semiconductor minerals, the synthesis of clays was demonstrated at low temperature and ambient pressure catalyzed by oxalate. Herein, the crystallization of clay minerals is catalyzed by succinate, an example of a photoproduced intermediate from central metabolism. The experiments connect the synthesis of sauconite, a model for clay minerals, to prebiotic photochemistry. We report the temperature, pH, and concentration dependence …

Weathering In Iowa: Not What You May Think, Alexa Sedlacek

UNIversitas: Journal of Research, Scholarship, and Creative Activity

When I look at the limestone bedrock of Iowa, as I did just the other day with my daughter (figure 2—[credit: Aaron Spurr, Quarry October 2, 2016]), I see long-term carbon storage. I do not mean a place to sequester modern atmospheric CO2 into the subsurface. Rather, limestones in Iowa and around the world represent carbon that was removed from the atmosphere through geologic processes and stored in these carbonate rocks. Carbon storage in rocks such as limestone and fossil fuels are responsible for the large scale changes in atmospheric CO2 concentrations throughout Earth’s history.

Nutrient Contamination From Non-Point Sources: Dissolved Phosphate In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Hunter R. Evans, Reid E. Buskirk, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Farms are non-point sources for nutrient contaminants that drain into watersheds and contribute to eutrophication and other environmental problems. Eastern Kentucky University’s Meadowbrook Farm raises both crops and livestock, causing dissolved phosphorus in the form of orthophosphate (PO₄^3-) from fertilizer and animal manure to enter surface and subsurface waters, eventually flowing into Muddy Creek, a tributary of the Kentucky River.

We sampled surface water, springs, and water from French drains that emanate from the farm, and also sampled Muddy Creek waters from May through August 2016. Typically, 1 to 2 days after sampling, we colorimetrically measured dissolved …

Nutrient Contamination From Non-Point Sources: Dissolved Nitrate And Ammonium In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Reid E. Buskirk, Hunter R. Evans, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Agricultural activities often contaminate watersheds with excess nutrients leading to poor water quality and eutrophication. We assayed dissolved nutrient levels in surface and subsurface waters of Eastern Kentucky University’s Meadowbrook Farm in order to assess levels of dissolved nutrients leaving its farmland and draining into the Muddy Creek watershed. The Farm raises both crops and livestock so that nutrient sources include fertilizer and manure. We sampled springs, runoff, and subsurface pipe drainage as well as Muddy Creek on six days from May to August 2016 under a variety of weather conditions. Using established, standard colorimetric methods, we measured nitrate (NO …

The Fate Of Carbon In Sediments Of The Xingu And Tapajós Clearwater Rivers, Eastern Amazon, Dailson J. Bertassoli Jr., André O. Sawakuchi, Henrique O. Sawakuchi, Fabiano N. Pupim, Gelvam A. Hartmann, Michael M. Mcglue, Cristiano M. Chiessi, Matthias Zabel, Enno Schefuß, Tatiana S. Pereira, Rudney A. Santos, Samantha B. Faustino, Paulo E. Oliveira, Denise C. Bicudo

Earth and Environmental Sciences Faculty Publications

The Xingu and Tapajós rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Cover Crop Root Contributions To Soil Carbon In A No-Till Corn Bioenergy Cropping System, Emily E. Austin, Kyle Wickings, Marshall D. Mcdaniel, G. Philip Robertson, A. Stuart Grandy

Faculty Publications

Crop residues are potential biofuel feedstocks, but residue removal may reduce soil carbon (C). The inclusion of a cover crop in a corn bioenergy system could provide additional biomass, mitigating the negative effects of residue removal by adding to stable soil C pools. In a no-till continuous corn bioenergy system in the northern US Corn Belt, we used 13CO2 pulse labeling to trace plant C from a winter rye (Secale cereale) cover crop into different soil C pools for 2 years following rye cover crop termination. Corn stover left as residue (30% of total stover) contributed 66, corn roots 57, …

Applying Population And Community Ecology Theory To Advance Understanding Of Belowground Biogeochemistry, Robert W. Buchkowski, Mark A. Bradford, A. Stuart Grandy, Oswald J. Schmitz, William R. Wieder

Faculty Publications

Approaches to quantifying and predicting soil biogeochemical cycles mostly consider microbial biomass and community composition as products of the abiotic environment. Current numerical approaches then primarily emphasise the importance of microbe–environment interactions and physiology as controls on biogeochemical cycles. Decidedly less attention has been paid to understanding control exerted by community dynamics and biotic interactions. Yet a rich literature of theoretical and empirical contributions highlights the importance of considering how variation in microbial population ecology, especially biotic interactions, is related to variation in key biogeochemical processes like soil carbon formation. We demonstrate how a population and community ecology perspective can …

Reconciling Opposing Soil Processes In Row-Crop Agroecosystems Via Soil Functional Zone Management, Alwyn Williams, Adam S. Davis, Andrea Jilling, A. Stuart Grandy, Roger T. Koide, David A. Mortensen, Richard G. Smith, Sieglinde S. Snapp, Kurt A. Spokas, Anthony C. Yannarell, Nicholas R. Jordan

Faculty Publications

Sustaining soil productivity in agricultural systems presents a fundamental agroecological challenge: nutrient provisioning depends upon aggregate turnover and microbial decomposition of organic matter (SOM); yet to prevent soil depletion these processes must be balanced by those that restore nutrients and SOM (soil building processes). These nutrient provisioning and soil building processes are inherently in conflict; management practices that create spatial separation between them may enable each to occur effectively within a single growing season, thereby supporting high crop yield while avoiding soil depletion. Soil functional zone management (SFZM), an understudied but increasingly adopted strategy for annual row-crop production, may help …

Effects Of Silvopasture Establishment On Aqueous And Gaseous Soil N Losses At The University Of New Hampshire Organic Dairy Research Farm, Kathryn Ann Slebodnik

Honors Theses and Capstones

The expansion of local agriculture in the New England region is putting increased pressure on farmers to expand their arable land base. While clear-cutting is a traditional method of converting forested land to agriculture, it is known for having adverse ecological impacts. To minimize these impacts, farmers can create a silvopasture which incorporates a portion of the original forest canopy into pastures or crop fields. This study evaluates the impact of land-use changes for agriculture on soil nitrogen (N) retention. In particular, this study investigates the differences in soil N turnover, gaseous loss, and aqueous loss among an established forest, …

Analysis Of Microbial Diversity In Disturbed Soil, Tyler G. Sanda

Williams Honors College, Honors Research Projects

This paper uses the composition and abundance of microbial species to analyze soil recovery in disturbed land. Surface mining disturbs ecological communities throughout the world. As organizations seek to reclaim these disturbed lands, a proper analysis of recovery is needed. In previous studies, recovery of disturbed land was limited to surface examinations, which do not characterize the possible unseen devastating effects of the subsoil. Soil microorganisms are extremely sensitive to environmental changes such as strip mining. It is proposed that these microorganisms may serve as better indicators of recovery post disturbance. Our analysis indicates microbial recovery, however it may not …

Structural Basis Of Membrane Protein Scaffolding And Signaling In Human Disease, Joshua Holcomb

Wayne State University Dissertations

Protein structural elucidation by means of X-ray crystallography is a powerful approach for both insight into a proteins biophysical properties and function. To date X-ray crystallography remains the gold standard in high resolution structural determination and serves as the basis for rational drug design for the purpose of combating a number of human diseases. Such an approach also allows for the exploitation of how various proteins interact with their substrates providing a molecular basis for their physiological function. In this dissertation, using X-ray crystallographic analysis along with other biophysical characterization methods, we seek to understand the mechanistic foundation for which …

Rock Magnetic Investigation Of The Michigan Basin Soils And Sediments Overlying The Oil-Bearing Silurian Pinnacle Reefs, Jake Tresnak

Dissertations, Master's Theses and Master's Reports

A relationship between the hydrocarbon migration and magnetic properties of near-surface sediments was investigated from several hundreds of samples collected over the hydrocarbon-bearing Silurian pinnacle reef belt of the Michigan Basin. The collected samples were investigated using several rock magnetic methods and optical microscopy. The investigation has not revealed a straightforward relationship between the magnetic susceptibility and hydrocarbon reservoirs within the reef belt; both anomalously high and low susceptibility values were observed. The elevated values are associated with newly formed magnetite in the form of spheroidal grains produced by hydrocarbon-related diagenesis while the extremely low susceptibilities may reflect dissolution of …