Biogeochemistry Commons^™

The Great 2012 Arctic Ocean Summer Cyclone Enhanced Biological Productivity On The Shelves, Jinlun Zhang, Carin Ashjian, Robert Campbell, Victoria Hill, Yvette H. Spitz, Michael Steele

OES Faculty Publications

A coupled biophysical model is used to examine the impact of the great Arctic cyclone of early August 2012 on the marine planktonic ecosystem in the Pacific sector of the Arctic Ocean (PSA). Model results indicate that the cyclone influences the marine planktonic ecosystem by enhancing productivity on the shelves of the Chukchi, East Siberian, and Laptev seas during the storm. Although the cyclone's passage in the PSA lasted only a few days, the simulated biological effects on the shelves last 1 month or longer. At some locations on the shelves, primary productivity (PP) increases by up to 90% and …

The Impact Of Changing Surface Ocean Conditions On The Dissolution Of Aerosol Iron, Matthew P. Fishwick, Peter N. Sedwick, Maeve C. Lohan, Paul J. Worsfold, Kristen N. Buck, Thomas M. Church, Simon J. Ussher

OES Faculty Publications

The proportion of aerosol iron (Fe) that dissolves in seawater varies greatly and is dependent on aerosol composition and the physicochemical conditions of seawater, which may change depending on location or be altered by global environmental change. Aerosol and surface seawater samples were collected in the Sargasso Sea and used to investigate the impact of these changing conditions on aerosol Fe dissolution in seawater. Our data show that seawater temperature, pH, and oxygen concentration, within the range of current and projected future values, had no significant effect on the dissolution of aerosol Fe. However, the source and composition of aerosols …

Carbon And Nitrogen Isotope Analysis Of Archaeological Faunal Material From Dutchess Quarry Caves, Ny, Jessica Zuhlke

Legacy Theses & Dissertations (2009 - 2024)

The purpose of this study was to do an isotopic analysis to determine the carbon and nitrogen isotope concentrations of archaeological faunal material found in the Dutchess Quarry Caves in Orange County, NY. These isotope values were then used to compare the taxa from which the samples were taken to determine if and how trophic relationships were formed. The main focus of this comparison spotlighted a sample from a human femur; to establish the human's position trophically with the other large and small mammal samples collected. The human had been previously radiocarbon dated to have lived between 2877 and 3180 …

Monitoring The Influence Of Acid Deposition On Soil And Implications To Forest Health In The Daniel Boone National Forest, Tyler M. Sanderson

Theses and Dissertations--Forestry and Natural Resources

Combustion of fossil fuels has contributed to many environmental problems including acid deposition. The Clean Air Act (CAA) was created to reduce ecological problems by cutting emissions of sulfur and nitrogen. Reduced emissions and rainfall concentrations of acidic ions have been observed since the enactment of the CAA, but soils continue to receive some acid inputs. Soils sensitive to acid deposition have been found to have low pH, a loss of base cations and a shift in the mineral phase controlling the activity of Al³⁺ and/or SO₄^2-. If inputs continue, soil may be depleted of base …

Exploring Changes In Detrital Flocculent Layer Dynamics Due To Shifts In Macrophyte Communities In The Northern Everglades, Erin Leigh Mckenney

Dissertations, Master's Theses and Master's Reports - Open

A shift in plant communities of the Water Conservation Areas (WCAs) within the Everglades has been linked to changes in hydrology and high levels of nutrient loading from surrounding agicultural areas. This has resulted in the encroachment of dense cattail stands (Typha domingensis) into areas that had previously been a ridge and slough landscape populated primarily by native sawgrass (Cladium jamaicense). In order to study ecological management solutions in this area, WCA-2A was broken into study plots; several of which became open water areas through the application of herbicide and burning regimens. The open water areas …

Direct Stratospheric Injection Of Biomass Burning Emissions: A Case Study Of The 2009 Australian Bushfires Using The Nasa Giss Modele2 Composition-Climate Model, Robert Field, Mike From, Apostolos Voulgarakis, Drew Shindell, Mike Flannigan, Peter Bernath

Chemistry & Biochemistry Faculty Publications

Direct stratospheric injection (DSI) of forest fire smoke represents a direct biogeochemical link between the land surface and stratosphere. DSI events occur regularly in the northern and southern extratropics, and have been observed across a wide range of measurements, but their fate and effects are not well understood.

DSIs result from explosive, short-lived fires, and their plumes stand out from the background concentrations immediately. This makes it easier to associate detected DSIs to individual fires and their estimated emissions. Because the emissions pulses are brief, chemical decay can be more clearly assessed, and because the emissions pulses are so large, …

A Coupled Geochemical And Biogeochemical Approach To Characterize The Bioreactivity Of Dissolved Organic Matter From A Headwater Stream, Rachel L. Sleighter, Rose M. Cory, Louis A. Kaplan, Hussain A.N. Abdulla, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

The bioreactivity or susceptibility of dissolved organic matter (DOM) to microbial degradation in streams and rivers is of critical importance to global change studies, but a comprehensive understanding of DOM bioreactivity has been elusive due, in part, to the stunningly diverse assemblages of organic molecules within DOM. We approach this problem by employing a range of techniques to characterize DOM as it flows through biofilm reactors: dissolved organic carbon (DOC) concentrations, excitation emission matrix spectroscopy (EEMs), and ultrahigh resolution mass spectrometry. The EEMs and mass spectral data were analyzed using a combination of multivariate statistical approaches. We found that 45% …

Compositions And Constituents Of Freshwater Dissolved Organic Matter Isolated By Reverse Osmosis, Yulong Zhang, Wen Huang, Jingdong Mao

Chemistry & Biochemistry Faculty Publications

Dissolved organic matter (DOM) from riverine and lacustrine water was isolated using a reverse osmosis (RO) system. Solid-state ¹³C nuclear magnetic resonance (¹³C NMR) was used to quantitatively evaluate the compositions and constituents of DOM, which are compared with previous investigations on marine DOM. Results indicated that concentration factor (CF) was a key metric controlling yield and sorption of DOM on the RO system. The sorption was likely non-selective, based on the ¹³C NMR and δ¹³C analyses. Carbohydrates and lipids accounted for 25.0–41.5% and 30.2–46.3% of the identifiable DOM, followed by proteins (18.2–19.8%) and …

Wavelength And Temperature-Dependent Apparent Quantum Yields For Photochemical Formation Of Hydrogen Peroxide In Seawater, David J. Kieber, Gary W. Miller, Patrick J. Neale, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Wavelength and temperature-dependent apparent quantum yields (AQYs) were determined for the photochemical production of hydrogen peroxide using seawater obtained from coastal and oligotrophic stations in Antarctica, the Pacific Ocean at Station ALOHA, the Gulf of Mexico, and at several sites along the East Coast of the United States. For all samples, AQYs decreased exponentially with increasing wavelength at 25 °C, ranging from 4.6 × 10−4 to 10.4 × 10−4 at 290 nm to 0.17 × 10−4 to 0.97 × 10−4 at 400 nm. AQYs for different seawater samples were remarkably similar irrespective of expected differences in the composition and concentrations …

Estimating Hydroxyl Radical Photochemical Formation Rates In Natural Waters During Long-Term Laboratory Irradiation Experiments, Luni Sun, Hongmei Chen, Hussain A. Abdulla, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

In this study it was observed that, during long-term irradiations (>1 day) of natural waters, the methods for measuring hydroxyl radical (˙OH) formation rates based upon sequentially determined cumulative concentrations of photoproducts from probes significantly underestimate actual ˙OH formation rates. Performing a correction using the photodegradation rates of the probe products improves the ˙OH estimation for short term irradiations (<1 day), but not long term irradiations. Only the ‘instantaneous’ formation rates, which were obtained by adding probes to aliquots at each time point and irradiating these sub-samples for a short time (≤2 h), were found appropriate for accurately estimating ˙OH photochemical formation rates during long-term laboratory irradiation experiments. Our results also showed that in iron- and dissolved organic matter (DOM)-rich water samples, ˙OH appears to be mainly produced from the Fenton reaction initially, but subsequently from other sources possibly from DOM photoreactions. Pathways of ˙OH formation in long-term irradiations in relation to H2O2 and iron concentrations are discussed.

Ionic Liquid Extraction Unveils Previously Occluded Humicbound Iron In Peat Porewater, Timothy J. Veverica

Dissertations, Master's Theses and Master's Reports - Open

Extracellular iron reduction has been suggested as a candidate metabolic pathway that may explain a large proportion of carbon respiration in temperate peatlands. However, the o-phenanthroline colorimetric method commonly employed to quantitate iron and partition between redox species is known to be unreliable in the presence of humic and fulvic acids, both of which represent a considerable proportion of peatland dissolved organic matter. We propose ionic liquid extraction as a more accurate iron quantitation and redox speciation method in humic-rich peat porewater. We evaluated both o-phenanthroline and ionic liquid extraction in four distinct peatland systems spanning a gradient of physico-chemical …

Denitrification In Soils: From Genes To Environmental Outcomes, Jianqiu Zheng

Dissertations, Master's Theses and Master's Reports - Open

Denitrification is an important process of global nitrogen cycle as it removes reactive nitrogen from the biosphere, and acts as the primary source of nitrous oxide (N₂O). This thesis seeks to gain better understanding of the biogeochemistry of denitrification by investigating the process from four different aspects: genetic basis, enzymatic kinetics, environmental interactions, and environmental consequences. Laboratory and field experiments were combined with modeling efforts to unravel the complexity of denitrification process under microbiological and environmental controls.

Dynamics of denitrification products observed in laboratory experiments revealed an important role of constitutive denitrification enzymes, whose presence were further confirmed …

Wetlands And Greenhouse Gas Fluxes: Causes And Effects Of Climate Change – A Meta-Analysis, Robert E. Ventura

Pomona Senior Theses

Climate change is one of the largest problems facing this generation. Anthropogenically caused increases of greenhouse gas emissions is a significant culprit to this problem. Although the obvious problems such as cars, industry, and urbanism garnish a significant amount of the criticism, natural sources such as wetlands are also beginning to contribute to this issue. This is becoming increasingly significant as wetlands shift from being sinks of greenhouse gases to becoming sources as various anthropogenic impacts, including global warming itself, begin to affect the health of the wetlands. The aim of this project is to look at four common types …

Contrasting Biogeochemical Cycles Of Cobalt In The Surface Western Atlantic Ocean, Gabrial Dulaquais, Marie Boye, Rob Middag, Stephanis Owens, Viene Puigcorbe, Ken Buesseler, Pere Masque´, Hein J. De Baar, Xavier Carton

Research outputs 2014 to 2021

Dissolved cobalt (DCo; 0.2μm; 10%) to the DCo stock of the mixed layer in the equatorial and north subtropical domains. Biotic and abiotic processes as well as the physical terms involved in the biogeochemical cycle of Co were defined and estimated. This allowed establishing the first global budget of DCo for the upper 100m in the western Atlantic. The biological DCo uptake flux was the dominant sink along the section, as reflected by the overall nutrient-type behavior of DCo. The regeneration varied widely within the different biogeochemical domains, accounting for 10% of the DCo-uptake rate in the subarctic gyre and …

Studying Soil Moisture And Land-To-Water Carbon Export In Urbanized Coastal Areas Using Remotely Sensed Data And A Regional Hydro-Ecological Model, Yun Yang

Graduate Doctoral Dissertations

The main objective of this research was to study the flux of dissolved organic carbon (DOC) from a terrestrial urbanized watershed to an estuarine system using a process-based regional hydro-ecological model and remotely sensed data.

While DOC is an important component of the global carbon cycle, the link of the variations in terrestrial carbon storage is still poorly understood. Soil moisture is a key factor that influences the amount of available water for vegetation growth and the decomposition rate of organic matter in the soil and thus contributes to the amount of DOC in the soil at the land-water boundary. …

Shifting Environmental Controls On Ch4 Fluxes In A Sub-Boreal Peatland, Thomas G. Pypker, P. A. Moore, John A. Hribljan, Rodney Chimner

Michigan Tech Publications, Part 1

We monitored CO₂ and CH₄ fluxes using eddy covariance from 19 May to 27 September 2011 in a poor fen located in northern Michigan. The objectives of this paper are to: (1) quantify the flux of CH₄ from a sub-boreal peatland, and (2) determine which abiotic and biotic factors were the most correlated to the flux of CH₄ over the measurement period. Net daily CH₄ fluxes increased from 70 mg CH₄ m⁻² d⁻¹ to 220 mg CH₄ m⁻² d⁻¹ from mid May to mid July. After July, CH_{4 …}

The Influence Of Hydrogeomorphology, Soil Redox Conditions, And Salinity On The Spatial Zoning Of Saltgrass, Salt Rush, And Cattails In Scotts Creek Marsh, Swanton Pacific Ranch, Ca, Mark D. Gormley

Master's Theses

Scotts Creek Marsh (SCM) is a small coastal wetland ecosystem in Davenport, CA. The vegetation of SCM is dominated by three halophytic zones comprised of saltgrass, salt rush, cattails. The objectives of the study were (i) to investigate the variables that influence the zoning of the three dominant halophyte communities in SCM and (ii) to the test the effectiveness of Indicator of Reduction in Soil (IRIS) tubes to indicate the reduction of S. The study examined the following parameters from April 6 to July 21, 2013: (i) the HGM of Scotts Creek Marsh, (ii) soil oxidation and reduction (redox) conditions, …

Stable Isotope And Modelling Evidence For Co2 As A Driver Of Glacial-Interglacial Vegetation Shifts In Southern Africa, F. J. Bragg, I. C. Prentice, S. P. Harrison, G. Eglinton, P. N. Foster

Dartmouth Scholarship

Atmospheric CO2 concentration is hypothesized to influence vegetation distribution via tree-grass competition, with higher CO2 concentrations favouring trees. The stable carbon isotope (delta C-13) signature of vegetation is influenced by the relative importance of C-4 plants (including most tropical grasses) and C-3 plants (including nearly all trees), and the degree of stomatal closure - a response to aridity in C-3 plants. Compound-specific delta C-13 analyses of leaf-wax biomarkers in sediment cores of an offshore South Atlantic transect are used here as a record of vegetation changes in subequatorial Africa. These data suggest a large increase in C3 relative to C4 …

Sources Of Nutrient And Fecal Microbe Pollution In Otter Creek, Madison County, Kentucky, Kandice L. Smith, Walter S. Borowski

EKU Faculty and Staff Scholarship

We measured nutrient (nitrate, ammonium, phosphate) and fecal microbe concentrations in surface waters of the Otter Creek watershed, Madison County, Kentucky to access sources of these contaminants. The watershed is approximately 12.5 miles long covering ~169 km² (41,832 acres). The watershed includes East Fork, West Fork, and Dreaming Creek, all tributaries to the main trunk of Otter Creek. The upper portion of the main trunk and Dreaming Creek drain urban areas of Richmond, but 85% of total watershed area is agricultural land, used mainly for grazing cattle. Rural residential areas and woodlands also occur.

The principle contaminants are nutrients …

A Source Of Terrestrial Organic Carbon To Investigate The Browning Of Aquatic Ecosystems, Jay T. Lennon, Stephen K. Hamilton, Mario E. Muscarella, A. Stuart Grandy, Kyle Wickings, Stuart E. Jones

Faculty Publications

There is growing evidence that terrestrial ecosystems are exporting more dissolved organic carbon (DOC) to aquatic ecosystems than they did just a few decades ago. This “browning” phenomenon will alter the chemistry, physics, and biology of inland water bodies in complex and difficult-to-predict ways. Experiments provide an opportunity to elucidate how browning will affect the stability and functioning of aquatic ecosystems. However, it is challenging to obtain sources of DOC that can be used for manipulations at ecologically relevant scales. In this study, we evaluated a commercially available source of humic substances (“Super Hume”) as an analog for natural sources …

Phosphorus Cycling In Tropical Carbonate Sediment-Seagrass Systems, Zachary Howerton

OES Theses and Dissertations

This thesis presents two studies focusing on phosphorus cycling in calcium carbonate sediments inhabited by seagrasses. Phosphorus is a major limiting nutrient for primary productivity in these sediments as well as in the overlying waters. In large part this is due to removal of phosphate from solution by adsorption and precipitation reactions.

In chapter II, the relationship between the size of the sedimentary phosphorus pool and the abundance of seagrass on the Great Bahama Bank, as well as the relationship between phosphorus content and grain size in the sediments, were examined to better understand the biogeochemistry of carbonate sediments and …

Zooplankton Trophic Ecology In The San Francisco Estuary During Summer As Determined By Stable Isotope Analysis, Kyla Bradylong, Steven Westbrook, Julien Moderan, Wim Kimmerer

STAR Program Research Presentations

Declines in the abundance of several pelagic fish species in the upper San Francisco Estuary have prompted investigation into food web interactions within the estuary and delta (the lower Sacramento and San Joaquin Rivers). This area is characterized by low primary production and pelagic food webs much longer and reticulated than previously thought, implying low efficiency in the energy transfers from primary producers to planktivorous fish. We determined the carbon and nitrogen stable isotope (SI) composition of zooplankton samples collected monthly between June 2012 and February 2013 at eight stations along the salinity gradient. As consumers SI composition reflects that …

Spectroscopic Study Of Uranium (Vi) Reduction By Plant Biomass, Margaret C. Murphy, John Bargar, Noémie Janot

STAR Program Research Presentations

Uranium is a common and problematic groundwater contaminant at Department of Energy legacy sites. At the former uranium ore processing plant at Rifle, Colorado, sediments rich in decayed plant biomass contain large concentrations of uranium that are slowly being released back to the aquifer. To simulate the reaction that occurs in organic rich sediments of the Rifle aquifer, biomass was incubated in U (VI) bearing groundwater. Carbon X-ray absorption spectroscopy (XAS) was then used to measure if uranium was bound to the biomass. When uranium binds to biomass the peaks in the C XAS spectra will change shape. Uranium L …

The Use Of The Ostracode Cyprideis Americana (Sharpe) As A Proxy For Salinity In Bahamian Lake Systems, Rachel E. Bowles

Masters Theses & Specialist Projects

Ostracodes, bi-valved crustaceans, are potentially excellent proxies for salinity.They are abundant, react to changes in salinity, and secrete low-magnesium calcite shells that preserve information about their host water chemistry. Changes in valve trace element concentration, stable isotope composition, and sieve pore shape values have been linked to changes in salinity. This study analyzed the response of the euryhaline ostracode, Cyprideis americana, to salinity in six lakes from two Bahamian islands across two seasons. The purpose of this work was to determine which compositional and morphological variables in C. americana are the most useful for paleosalinity reconstructions.Ostracode and water samples were …

The Impact Of Nitrogen Contamination And River Modification On A Mississippi River Floodplain Lake, Indu Karthic, Richard B. Brugam Ph.D., William A. Retzlaff, Kevin Johnson

SIUE Faculty Research, Scholarship, and Creative Activity

Anthropogenic nitrogen contamination has increased in ecosystems around the world (frequently termed the “nitrogen cascade”). Coke production for steel manufacturing is often overlooked as a source of nitrogen to natural ecosystems. We examined sediment cores from a Horseshoe Lake, a floodplain lake located just East of St. Louis Missouri (USA) to test whether a coking plant effluent could be traced using stable isotopes of nitrogen and diatom microfossils. The distribution of δ¹⁵N values in surface sediment samples from the lake shows the highest values near the coking plant effluent. Analysis stable isotopes of nitrogen from sediment cores using …

Will Hubbard Brook Soils Be A Source Or Sink Of Carbon In A Changing Climate?, Chris E. Johnson

Civil and Environmental Engineering - All Scholarship

No abstract provided.

Microbial Biogeochemistry Of Boiling Springs Lake: A Physically Dynamic, Oligotrophic, Low-P H Geothermal Ecosystem, Patricia Lynne Siering, Gordon V. Wolfe, Mark S. Wilson, A. N. Yip, Cynthia M. Carey, Colin D. Wardman, Russell Scott Shapiro, Kenneth M. Stedman, Jennifer E. Kyle, Tong Yuan, Joy D. Van Nostrand, Zhili He, Jizhong Zhou

Biology Faculty Publications and Presentations

Boiling Springs Lake (BSL) in Lassen Volcanic National Park, California, is North America's largest hot spring, but little is known about the physical, chemical, and biological features of the system. Using a remotely operated vessel, we characterized the bathymetry and near-surface temperatures at sub-meter resolution. The majority of the 1.2 ha, pH 2.2 lake is 10 m deep and 50-52 [degrees]C, but temperatures reach 93 [degrees]C locally. We extracted DNA from water and sediments collected from warm (52 [degrees]C) and hot (73-83 [degrees]C) sites separated by 180 m. Gene clone libraries and functional gene microarray (GeoChip 3.0) were used to …

Mechanisms Of Nutrient Limitation And Nutrient Acquisition In Managed And Unmanaged Forest Ecosystems, Matthew A. Vadeboncoeur

Doctoral Dissertations

Understanding the interactions between global change, human and natural disturbances, and other factors on biogeochemical processes in forests is necessary to ensure the sustainability of forest management. Here I report the results of several investigations into nutrient acquisition processes in the forests of New Hampshire. I begin with a meta-analysis of fertilization studies showing that phosphorus (P) and calcium (Ca) as well as nitrogen (N) may limit primary production in deciduous forests of the region. Because these limiting nutrients are all removed from the ecosystem when trees are harvested, I compared nutrient budgets under a range of harvesting scenarios with …

Springtime Contribution Of Dinitrogen Fixation To Primary Production Across The Mediterranean Sea, E. Rahav, B. Herut, A. Levi, Margaret Mulholland, I. Berman-Frank

OES Faculty Publications

Dinitrogen (N-2) fixation rates were measured during early spring across the different provinces of Mediterranean Sea surface waters. N-2 fixation rates, measured using N-15(2) enriched seawater, were lowest in the eastern basin and increased westward with a maximum at the Strait of Gibraltar (0.10 to 2.35 nmol NL-1 d(-1), respectively). These rates were 3-7 fold higher than N-2 fixation rates measured previously in the Mediterranean Sea during summertime and we estimated that methodological differences alone did not account for the seasonal changes we observed. Higher contribution of N-2 fixation to primary production (4-8 %) was measured in the western basin …

Exploring Greenhouse Gas Emissions From Beaver Ponds In Southern Rhode Island, Molly K. Welsh

Senior Honors Projects

Climate change is one of the largest environmental issues facing humanity today, having the potential to alter fresh water availability, agricultural yields, forest productivity, and global sea levels. As climate change is likely to increase the intensity of extreme weather events, the potential for massive human and financial consequences is of further concern. The Intergovernmental Panel on Climate Change asserts that climate change is due to anthropogenic alterations of the atmosphere’s composition, with additional contributions from natural biochemical processes. In particular, the rapid increase in the concentrations of greenhouse gases (GHGs) in the atmosphere can trigger atmospheric warming as these …