Biogeochemistry Commons^™

Quantifying Distribution In Carbon Uptake Across A Global Measurement Network Of Terrestrial Ecosystems, John Zobitz, Madeline Oswood

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Egestion Versus Excretion: A Meta-Analysis Examining Nutrient Release Rates And Ratios Across Freshwater Fauna, Halvor Halvorson, Carla Atkinson

Faculty Publications

In aquatic settings, animals directly affect ecosystem functions through excretion of dissolved nutrients. However, the comparative role of egestion as an animal-mediated nutrient flux remains understudied. We conducted a literature survey and meta-analysis to directly compare nitrogen (N), phosphorus (P), and N:P of egestion compared to excretion rates and ratios across freshwater animals. Synthesizing 215 datasets across 47 animal species (all primary consumers or omnivores), we show that the total N and P egestion rates exceed inorganic N and P excretion rates but not total N and P excretion rates, and that proportions of P egested compared to excreted depend …

Hypoxia In Mangroves: Occurrence And Impact On Valuable Tropical Fish Habitat, Alexia Dubuc, Ronald Baker, Cyril Marchand, Nathan Waltham, Marcus Sheaves

School of Marine and Environmental Sciences Faculty and Staff Publications and Presentations

Intertidal mangrove forests are harsh environments that can naturally experience hypoxia in association with low tide. However, we know relatively little about dissolved oxygen (DO) fluctuations and DO-induced responses by fish, although DO is a fundamental water quality parameter. This study examines DO as a potential factor regulating the utilization of intertidal mangrove forests by fish and consequently their widely recognized feeding, refuge and nursery values. We deployed underwater video cameras, coupled with DO and depth loggers, in a mangrove forest to record changes in fish assemblages in response to tidal variations in DO and other associated environmental parameters. Our …

Genesis Of Iron And Manganese Sediments In Zoloushka Cave (Ukraine/Moldova) As Revealed By Δ13C Organic Carbon, Piotr Kotula, Viacheslav Andreychouk, Jacek Pawlyta, Leszek Marynowski, Izabela Jendrzejewska

International Journal of Speleology

Zoloushka Cave is one of the largest maze gypsum caves in the world. Mining of the gypsum bedrock and lowering of the water level due to the pumping of groundwater led to exposure of the cave passages to vadose conditions and changed the hydrochemistry of the karst water. As a result, large quantities of Fe and Mn hydroxides were deposited in the passages. It was found that at least two groups of various organisms were involved in depositing ferrous and manganese sediments. In order to establish the mechanism of deposition, we conducted chemical analyses of the sediments and isotopic analyses …

Understanding The Behavior Of Sulfidic Colloids In The Presence Of Metals, Daniel Zamudio, Alex Quyenvo, Vincent Noël, John Bargar

STAR Program Research Presentations

Riverton, Wyoming was host to a former uranium and vanadium ore processing plant, which operated from 1958 to 1963. The milling operations at the site contaminated the surface and shallow groundwater. The area became a Department of Energy (DOE) legacy site, where the U.S. Nuclear Regulatory Commission approved the DOE’s natural flushing compliance strategy. Up until the flooding in 2010, the natural flushing compliance strategy was going underway as expected. Sampling after the flood revealed a significant increase in contaminant concentration.

New updated models need to be developed to help understand the situation at Riverton, for which this laboratory experiment …

Small Soil C Cycle Responses To Three Years Of Cover Crops In Maize Cropping Systems, Anna M. Cates, Matthew D. Ruark, A. Stuart Grandy, Randall D. Jackson

Faculty Publications

Cover crops are touted for their ability to improve many ecosystem functions in annual cropping systems. In addition to water and nutrient retention, cover crops may influence C cycling by increasing total C inputs to the agroecosystem, stimulating microbial populations, altering main crop residue decomposition rate, or changing litter chemistry over time. We assessed whether annual (rye) or perennial (bluegrass) cover crops in maize cropping systems influenced maize residue decomposition (litterbags) or microbial communities (shotgun metagenomics) in soil and litter, and whether these cover crops had an effect on microbially active pools of C: particulate organic matter (POM) C and …

Assessing Diagenetic Conditions In The Late Triassic Chinle Formation Through Petrographic And Geochemical Analysis Of Phytosaur Teeth, John Fortner

Earth Sciences Theses and Dissertations

The Upper Triassic (Norian; ~227-208 Ma) Chinle Formation of Petrified Forest (PeFo) National Park was deposited during a time of major tectonic breakup and profound changes in atmospheric circulation and faunal compositions. Little has been done however to assess whether surficial paleoenvironmental trends related to deterioration of the Late Triassic Megamonsoon resulted in similar trends in the early diagenetic environment. Here, we use phytosaur tooth dentin as a proxy for diagenetic conditions in the Chinle of PEFO, as its greater susceptibility to chemical alteration relative to enamel makes it an excellent substrate from which changing diagenetic conditions may be studied …

The Role Of A Permeable Sand Column In Modifying Tidal Creek Geochemistry And Land-Derived Inputs To The Coastal Ocean, Nicholas Anthony Legut

Electronic Theses and Dissertations

The impairment of regional water quality in Long Bay is an episodic occurrence that has been documented for over a decade. According to one explanation, the occurrence of these events is hypothesized to be the combination of local, terrestrially derived inputs and water-column stratification in the nearshore zone. A portion of these inputs may discharge as surface run-off through estuaries ending in sandy transitional environments termed "swashes". An investigation into the fate of land-derived materials through swashes utilize a linear conservative mixing model to describe the non-conservative behavior of materials in the overlying water and pore-water. This model relies on …

Biogeochemical Controls Of Surface Ocean Phosphate, Adam C. Martiny, Michael W. Lomas, Weiwei Fu, Philip W. Boyd, Yuh-Ling L. Chen, Gregory A. Cutter, Michael J. Ellwood, Ken Furuya, Fuminori Hasshihama, Jota Kanda, David M. Karl, Taketoshi Kodama, Qian P. Li, Jian Ma, Thierry Moutin, E. Malcolm S. Woodward, J. Keith Moore

OES Faculty Publications

Surface ocean phosphate is commonly below the standard analytical detection limits, leading to an incomplete picture of the global variation and biogeochemical role of phosphate. A global compilation of phosphate measured using high-sensitivity methods revealed several previously unrecognized low-phosphate areas and clear regional differences. Both observational climatologies and Earth system models (ESMs) systematically overestimated surface phosphate. Furthermore, ESMs misrepresented the relationships between phosphate, phytoplankton biomass, and primary productivity. Atmospheric iron input and nitrogen fixation are known important controls on surface phosphate, but model simulations showed that differences in the iron-to-macronutrient ratio in the vertical nutrient supply and surface lateral transport …

Agriculture, Ecosystems & Environment, William A. Arigiroff, Donald R. Zak, Rima A. Upchurch, Sydney O. Salley, A. Stuart Grandy

Faculty Publications

Fine root litter is a primary source of soil organic matter (SOM), which is a globally important pool of C that is responsive to climate change. We previously established that ~20 years of experimental nitrogen (N) deposition has slowed fine root decay and increased the storage of soil carbon (C; +18%) across a widespread northern hardwood forest ecosystem. However, the microbial mechanisms that have directly slowed fine root decay are unknown. Here, we show that experimental N deposition has decreased the relative abundance of Agaricales fungi (−31%) and increased that of partially ligninolytic Actinobacteria (+24%) on decaying fine roots. Moreover, …

Carbon And Nitrogen Stable Isotopes In Organic Matter From Lake Chalco, Mexico: A Record Of Quaternary Hydrology And Climate Change, Kristin Slezak Pearthree

Earth and Planetary Sciences ETDs

Sediment cores from Lake Chalco, central Mexico, were analyzed to reconstruct paleoclimate in the neotropics. This study employs total organic carbon, organic carbon-organic nitrogen ratios, carbon and nitrogen stable isotope ratios of organic matter (OM), and lithology to reconstruct changes in lake level and productivity. During Marine Isotope Stage 3 (~42-29 ka) bulk OM d¹³C and d¹⁵N results suggest the lake experienced strong evaporation and high pH due to warm temperatures and moderate precipitation. Large amounts of terrestrial C3 plant matter were deposited during the Last Glacial Maximum (~22-19 ka), suggesting a swampy environment resulting from …

An Urban Karst Aquifer Resource Evaluation And Monitoring Toolbox, Rachel Anne Kaiser

Masters Theses & Specialist Projects

In urban karst areas, such as the City of Bowling Green, Kentucky and the Tampa Bay Metropolitan Area, groundwater quality faces a variety of threats. The development of residential, commercial, and industrial landuse types allows for a wide variety of groundwater pollutants to enter the karst groundwater systems. Various different models and indices have attempted evaluative approaches to identify issues in urban karst areas, but the methods vary by location and lack a focus on urban karst groundwater quality. There also exists a lack of a data-driven approach that is able to capture short- and long-term changes in threats to …

Lipid Biomarkers Of Bering And Chukchi Sea Euphausiids And Their Application To Diet History, Rachel L. Pleuthner

OES Theses and Dissertations

In the eastern Bering Sea, Thysanoessa raschii are the most abundant krill species and a keystone trophic member that serve as both an important grazer and link to upper level consumers. In this system krill experience large annual variation in food resources, especially during ice advance and retreat; multiple lipid classes are used to temper the effects of those fluctuations, as well as to fuel reproduction and growth. Two shipboard feeding experiments that occurred during late spring and early summer of 2010, respectively, monitored the lipid retention in adult T. raschii and examined the fluctuation of specific lipid biomarkers under …

The Distribution And Biogeochemistry Of Subtropical Intertidal Microbial Mats, Bert D. Anderson

USF Tampa Graduate Theses and Dissertations

Microbial mats have played an important role in the carbon (C) and nutrient cycles since the Archean Eon and modern mats are important contributors to the biogeochemistry of intertidal wetlands. Microbial mats are flat assemblages of microbes that are currently found in many unvegetated habitats globally. Intertidal salt pans are a common habitat for microbial mats, however little is known about the distribution of microbial mats within the intertidal landscape. Understanding the spatial distribution of microbial mats is critical to developing quantitative estimates of the impacts of microbial mats on their ecosystems. We photographically measured the presence and density of …

Identifying Dietary And Migratory Patterns Of Illinois Woolly Mammoth Populations Using Isotope Analysis Of Carbon, Oxygen, And Strontium, Matthew Harrington, Chris Widga, Al Wanamaker, Doug Walker

Celebration of Learning

The extinct woolly mammoth (Mammuthus primigenius) ranged from Alaska to the Northeastern Seaboard throughout the Late Pleistocene (100-10 Ka). Although it is recognized that woolly mammoths coincided with and lived in a region heavily influenced by glacial ice sheets, little is known about their dietary or migratory behavior. This study classifies and provides insight into the diet and mobility of Midwestern mammoths by analyzing stable isotopes of carbon, oxygen, and strontium preserved in the tooth enamel of these extinct elephantids. A woolly mammoth tooth from Moline, IL, was bulk-sampled and micromilled to extract the aforementioned isotopes from the …

Beyond Static Benchmarking: Using Experimental Manipulations To Evaluate Land Model Assumptions, William R. Wieder, David M. Lawrence, Rosie A. Fisher, Gordon B. Bonan, Susan J. Cheng, Christine L. Goodale, A. Stuart Grandy, Charles D. Koven, Danica L. Lombardozzi, Keith W. Oleson, R. Quinn Thomas

Faculty Publications

Land models are often used to simulate terrestrial responses to future environmental changes, but these models are not commonly evaluated with data from experimental manipulations. Results from experimental manipulations can identify and evaluate model assumptions that are consistent with appropriate ecosystem responses to future environmental change. We conducted simulations using three coupled carbon-nitrogen versions of the Community Land Model (CLM, versions 4, 4.5, and—the newly developed—5), and compared the simulated response to nitrogen (N) and atmospheric carbon dioxide (CO2) enrichment with meta-analyses of observations from similar experimental manipulations. In control simulations, successive versions of CLM showed a poleward increase in …

Scenes From The Swale: Investigating Spatial And Temporal Dimensions Of Nitrogen Cycling In Urban Stormwater Bioretention Facilities, Erin Nicole Looper

Dissertations and Theses

Urban development is transforming landscapes at unprecedented rates. Human activities and landscape modifications associated with urbanization extensively increase hydrologic demands and modify natural hydrologic systems; consequently, population growth occurring in urban areas increases pressure on water resources. Urban aquatic ecosystems are vulnerable to impacts associated with increased connectivity with urban surfaces and hydrologic changes that initiate long-term changes in receiving waterbodies. Nitrogen (N) loading from urban and suburban catchments to receiving surface waters can lead to impairment of aquatic ecosystems and is a concern in many cities with water quality issues. To improve urban water quality, cities are increasingly adopting …

Managing Agroecosystems For Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, And A Path Forward, Cynthia M. Kallenbach, Matthew D. Wallenstein, Meagan E. Schipanksi, A. Stuart Grandy

Faculty Publications

Agricultural systems are increasingly managed for improving soil carbon (C) accumulation. However, there are limits to C returns in agricultural systems that constrain soil C accumulation capacity. Increasing the efficiency of how soil microbes process C is gaining interest as an important management strategy for increasing soil C and is a key feature of soil C dynamics in many new microbial-explicit models. A higher microbial C use efficiency (CUE) may increase C storage while reducing C system losses and is a fundamental trait affecting community assembly dynamics and nutrient cycling. However, the numerous ecological unknowns influencing CUE limit our ability …

Substrate Quality And Concentration Control Decomposition And Microbial Strategies In A Model Soil System, Jorg Schnecker, Timothy Bowles, Erik A. Hobbie, Richard G. Smith, A. Stuart Grandy

Faculty Publications

Soil carbon models typically scale decomposition linearly with soil carbon (C) concentration, but this linear relationship has not been experimentally verified. Here we investigated the underlying biogeochemical mechanisms controlling the relationships between soil C concentration and decomposition rates. We incubated a soil/sand mixture with increasing amounts of finely ground plant residue in the laboratory at constant temperature and moisture for 63 days. The plant residues were rye (Secale cereale, C/N ratio of 23) and wheat straw (Triticum spp., C/N ratio of 109) at seven soil C concentrations ranging from 0.38 to 2.99%. We measured soil respiration, dissolved organic carbon (DOC) …

The Potential Acidification Of The Mulberry River, Arkansas, Jason Richard Burgess-Conforti

Graduate Theses and Dissertations

The Mulberry River is a 110 km long tributary of the Arkansas River in northwest Arkansas and has been designated as a National Wild and Scenic River since 1992. In 2008, the Mulberry River was added to the 303(d) list of impaired water bodies due to the low pH of a 14.6 km segment of the river which has since increased to 68.7 km. To date, there has been little research performed on the Mulberry River and long-term routinely sampled water quality data is unavailable. The objectives of this dissertation were 1) to evaluate changes in water quality of the …

Losses Of Mineral Soil Carbon Largely Offset Biomass Accumulation Fifteen Years After Whole-Tree Harvest In A Northern Hardwood Forest, Matthew A. Vadeboncoeur, Steven P. Hamburg, Chris E. Johnson, Jonathan Sanderman

All Materials

Changes in soil carbon stocks following forest harvest can be an important component of ecosystem and landscape-scale C budgets in systems managed for bioenergy or carbon-trading markets. However, these changes are characterized less often and with less certainty than easier-to-measure aboveground stocks. We sampled soils prior to the whole-tree harvest of Watershed 5 at the Hubbard Brook Experimental Forest in 1983, and again in years 3, 8, and 15 following harvest. The repeated measures of total soil C in this stand show no net change in the O horizon over 15 years, though mixing with the mineral soil reduced observed …

Coupling Metaproteomics With Taxonomy To Determine Responses Of Bacterioplankton To Organic Perturbations In The Western Arctic Ocean, Molly P. Mikan

OES Theses and Dissertations

Understanding how the functionality of marine microbial communities change over time and space, and which taxonomic groups dominate distinct metabolic pathways, are essential to understanding the ecology of these microbiomes and the factors contributing to their regulation of elemental cycles in the oceans. The primary goal of this dissertation was to investigate the community metabolic and taxonomic responses and the degradation potential of two compositionally distinct marine microbiomes within the shallow shelf ecosystem of the Chukchi Sea after rapid fluctuations in algal organic matter availability. Novel bioinformatics tools were collaboratively developed and used together with community proteomics (metaproteomics) to characterize …

Dissolved Inorganic Nitrogen Dynamics In Swash Zone Sands Of Long Bay, Sc, Alexis F. Echols

Honors Theses

A key component affecting the biogeochemistry of the sedimentary environment is pore water between grains of sediments. Sedimentary microorganisms are constantly modifying chemical compounds as part of their life functions which are then exchanged between the sediment column and the overlying water column. Dissolved inorganic nitrogen, a major element for life, takes on several forms including nitrate, nitrite, and ammonium which vary in concentration throughout the sediment and with respect to each other. The relative concentrations of these nitrogen species have been previously briefly explored in sandy columns, where redox gradients that control their relative concentrations can be fairly deep …

Character And Water Quality Of Sandpiper Pond: A Coastal Pond Assessment, Fifteen Years After Restoration, Nicholas E. Workman

Honors Theses

Sandpiper Pond is a coastal pond at Huntington Beach State Park, South Carolina. Originally a tidal inlet surrounded by marshland, it was isolated in 1989 and rechanneled in 2004-2005 under a community-based wetland restoration project. The project was designed to restore the pond to a tidal inlet to improve water quality and biodiversity. Since then, the tidal connection with the ocean has been severed once more and the main influx of seawater occurs from the marsh during spring high tides. In this three-month study, the current state of Sandpiper Pond is evaluated using fundamental biogeochemical indicators that are indicative of …

Spatiotemporal Variation Of Benthic Silica Fluxes In The Ngom Shelf, Byron Ebner

LSU Master's Theses

Dissolved silica (DSi), plays an important role in regulating primary productivity of silicifying organisms, such as diatoms which precipitate hard parts composed of biogenic silica (bSi) in coastal and shelf ecosystems fed by major rivers. In the Northern Gulf of Mexico (NGOM), loading of nitrogen and phosphorous have increased compared to a decline in DSi in the Mississippi River. Continued decreasing in DSi loading could lead to limited diatom growth and production or shifts in community composition, therefore, it is important understand the role of benthic fluxes in providing silica to the overlying water column as there are few regional …

Data For Paper "Microbial Generation Of Elemental Mercury From Dissolved Methylmercury In Seawater", Cheng-Shiuan Lee, Nicholas S. Fisher

SoMAS Research Data

Elemental mercury (Hg⁰) formation from other mercury species in seawater results from photoreduction and microbial activity, leading to possible evasion from seawater to overlying air. Microbial conversion of monomethylmercury (MeHg) to Hg⁰ in seawater remains unquantified. A rapid radioassay method was developed using gamma-emitting ²⁰³Hg as a tracer to evaluate Hg⁰ production from Hg(II) and MeHg in the low pM range. Bacterioplankton assemblages in Atlantic surface seawater and Long Island Sound water were found to rapidly produce Hg0, with production rate constants being directly related to bacterial biomass and independent of dissolved Hg(II) and MeHg …

Iron Mediated Organic Preservation In A River Influenced Continental Margin, Neha Ajit Ghaisas

LSU Doctoral Dissertations

Continental margins such as the Mississippi river influenced Louisiana shelf (MIS), are important land-ocean interfaces where excessive water column productivity and rapid burial results in large amounts of organic carbon (OC) being sequestered in the sediments. The preservation of OC in sediments is controlled by a number of processes among which mineral-OC interactions are considered to be more important. Specifically, the interactions between sediment iron (Fe) species and OC have been shown to promote carbon preservation. However, the exact nature of preservation mechanism is not well understood and is based on limited global data, which specifically lacks estimates from large …

Evaluating Seasonal Nutrient Fluxes In Emerging And Eroding Wetlands Of The Louisiana Delta Plain, Kiran Upreti

LSU Doctoral Dissertations

Deltaic wetlands can ameliorate high NO₃^- loads via denitrification, a dominant NO₃^- reduction pathway in inland and coastal habitats. Dissimilatory Nitrate Reduction to Ammonia (DNRA), in contrast to denitrification, conserves N within the system and has been found to be favored over denitrification with increase in salinity and temperature. There are no studies in the Louisiana Deltaic plain with simultaneous estimation of denitrification and DNRA. Increased P availability has been shown to increase denitrification so it is essential to understand P biogeochemistry when studying N cycle. Here, we evaluated net denitrification using N₂:Ar and …

Soil Macroinvertebrate Presence Alters Microbial Community Composition And Activity In The Rhizosphere, Natalie Bray, Jenny Kao-Kniffin, Serita D. Frey, Timothy Fahey, Kyle Wickings

Faculty Publications

Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere

Restoration Of Soil Microbial Function Following Degradation On Department Of Defense Lands: Mediating Biological Invasions In A Global Change Context, Kristina Stinson, Serita D. Frey

Faculty Publications

This project was designed to better understand the roles of soil biota in 1 mediating native species-NIS interactions and 2 facilitating the recovery of degraded ecosystems. The associated Research Needs were listed as follows 1. To quantify the functional diversity of soil biota and the role of key taxa in maintaining desired functional ecosystem attributes 2. To identify processes by which desired soil properties and associated soil biotic communities are degraded by NIS invasion and test potential mechanisms to restore them 3. To examine the role of disturbance in determining the functional attributes of the soil community 4. To test …