Biomedical Engineering and Bioengineering Commons^™

Long-Term Simulation Of Stem Cell Mechanobiology, Manoochehr Rabiei

Mechanical and Aerospace Engineering Dissertations - Archive

An accurate representation of cellular mechanobiology necessitates the inclusion of subcellular elements characterized by minute masses and dimensions. These minute objects yield multiscale dynamic models with disproportionate terms, which require inordinate amounts of computational time to simulate. The computational requirements limit the time span of the simulation to time histories shorter than one second, even when employing supercomputers. This work presents a high-speed approach to simulating the mechanobiology of stem cells. The proposed approach separates the computational time from the size, and distribution, of masses of the subcellular elements, enabling the simulation of weeks-long cellular processes within hours on a …

Human System Composite Performance Measures: General Systems Performance Theory Insights, Lawrence Disalvi

Bioengineering Dissertations - Archive

Composite Performance Measures (CPMs) of human performance are widely employed in applications that range from mundane to life-changing, yet they are frequently presented without explanation or reference to theoretical underpinnings. The conceptual soundness of a widely used CPM approach, based on additive combination of constituent components, has been called into question by Kondraske. He argues the relevance of General Systems Performance Theory (GSPT) and performance capacity envelope concepts when applied to multidimensional CPM measures.

To obtain evidence-based answers to assertions regarding CPM types and rationale employed in medical and non-medical contexts, a Systematic Descriptive Review was conducted. Separately, the GSPT-based …

Algorithm Development For Analysis Of Optical Time-Series Data Generated By Biomodal Optical-Electrical Nanopore Sensor, Yu-Shiuan Huang

Bioengineering Theses - Archive

Nanopore biosensors have played an essential role in the scientific investigation of DNA, RNA, proteins, and other bio-analytes. Traditional nanopore biosensors detect variations in electrical current conductance caused by the analyte blocking the current passing transiently through a nano-sized aperture, i.e., the nanopore. This electrical data provides information about the amount of current blockage when the analyte is inside the nanopore and the time it takes for analytes to travel through the nanopore (translocation time). The translocation time of analytes in standard nanopore measurements is typically very short, usually tens of microseconds, limiting the accuracy of measuring the analytes’ characteristics. …

Computational And Experimental Analysis Of Silica Nanoparticles Under Dc And Ac Electric Fields Using A Self-Induced Back Action Actuated Nanopore Electrophoresis (Sane) Sensor, Homayoun Asadzadeh, Scott Renkes, George Alexandrakis, Minjun Kim, Scott Turpin

Bioengineering Dissertations - Archive

In this dissertation I have studied a novel single-molecule nanosensor that integrates a Solid-State Nanopore (SSNP), milled in silicon nitride with a Double Nanohole (DNH) nanoaperture, milled in gold. This device leverages Self-Induced Back-Action (SIBA) for optical trapping with ssNP electrical sensing and is called the SIBA-Actuated Nanopore Electrophoresis (SANE) sensor. My lab has previously shown that simultaneous acquisition of bimodal optical and direct current (DC) electrical signatures enables more detailed characterization of nanoscopic analytes compared to using electrical data alone, which are typically collected by ssNP sensors. In this work I have first studied by COMSOL Multiphysics simulations the …

Spray-On Sensor Formulations That Enable Detection Of Physical And Chemical Stimuli, Priyanka Shiveshwarkar

Bioengineering Dissertations - Archive

Polydiacetylene based materials have been used for a variety of liquid phase sensing applications. There remains a need for low cost, easy-to-read gas phase sensors for continuous monitoring of physiological parameters and environmental hazards at work or at home. Such sensors could have applications in everyday life, for example as point-of-care or at home testing devices to enable early detection of disease to reduce healthcare costs. Making accessible and non-invasive technologies for monitoring of health and health risks provides individuals with the ability to be proactive in regard to their health and safety. In other examples, environmental monitoring systems could …

Development Of Anti-Microbial Nanocoatings On Metallic Surfaces To Prevent Infections, Luis Fernando Soto Garcia

Bioengineering Dissertations - Archive

Healthcare-associated infections have a prevalence of about 7% in the United States and up to 50% in some developing nations. They not only present a constant risk for inpatients and healthcare workers but are also a serious challenge to human health services worldwide. These infections can be transmitted via contaminated non-critical surfaces like doorknobs and bedrails, which are routinely cleaned with low-level disinfectants approved by the U.S. Environmental Protection Agency. However, this strategy has limited efficacy since recontamination occurs, resulting in these surfaces again becoming vectors of infection. In this work, we addressed this issue by developing a self-disinfecting nanocomposite …

The Effects Of Bilateral Stimulation On Motor Learning, Shania Rehmudin

Dissertations and Theses

Motor learning is a set of complex processes aimed at learning and refining new skills by practicing them. There are three proposed stages of motor learning: cognitive, associative, and autonomous. While all stages are crucial, research suggests that the cognitive stage holds particular significance, laying the foundational groundwork for effective skill acquisition. Although research has explored many innovative ways to facilitate motor memory, to our knowledge, none has explored the optimization of motor skill learning through manipulating the focus of attention using bilateral stimulation. Therefore, this study explored the effects of bilateral stimulation on squat skill acquisition. Nineteen (19) subjects, …

Mivt: Medical-Informed Vision Transformer For Early Epilepsy Diagnosis, Md Masum Rana

Dissertations and Theses

Epilepsy is a neurological disorder characterized by recurrent, unprovoked seizures, and early diagnosis is crucial for effective management and treatment. However, the diagnosis of epilepsy, particularly in its early stages, remains challenging due to the subtle nature of seizures and the complexity of brain activity patterns. In this research, we introduce the Medical-Informed Vision Transformer (MIVT), a deep learning architecture specifically designed to improve early epilepsy diagnosis from multimodal neuroimaging data. Our model integrates insights from both medical knowledge and state-of-the-art Vision Transformers (ViTs) to enhance the accuracy and interpretability of seizure detection and localization. The MIVT leverages the rich …

Balloon Model For Water Vapor Ablation Of Non-Muscular Invasive Bladder Cancer Cells, Jennifer Mussell

Dissertations and Theses

Bladder cancer has a considerable issue with multiple recurrences of tumors, and current treatments are unable to adequately address these concerns. This results in continuous surveillance. Ablation, or killing, of bladder cancer cells is often incomplete and results in a high probability of recurrence. This paper aims to evaluate a potential method of ablation using a model that simulates a bladder and what conditions are needed for optimal quality and depth penetration. This balloon model for water vapor ablation is intended to simulate bladder cancer cells and determine if this is a viable avenue for future research. A device from …

Development Of A Modular Lab Automation System With Applications To Animal And Bacteria Cell Culture, Timothy William Hartman

Dissertations and Theses

The challenges faced while executing wet lab protocols encourage the development of automation systems to come alongside human scientists. Today’s cutting-edge experiments involve complex protocols with precise measurements usually performed manually. Even simpler biological protocols can be tedious and prone to error, as was seen during the COVID-19 pandemic and society’s demand for high-volume, rapid sample analysis. Moreover, reproducibility suffers when there is excessive variability and insufficient data. Here, we leveraged the Stanford Biodesign process to develop a modular lab automation system and image analysis workflow to address challenges like these. This flagship automation platform at The University of South …

Biom 3710: Physiological Systems And Modeling (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Fundamentals of control theory and mathematical modeling and analysis as applied to physiological systems.

Biom 4802/6802: Assertion-Evidence Model For Presentations In Engineering And Science (Syllabus), Amber Jennings

Biomedical Engineering Syllabi Archive

Course Description: This course will provide training and practice in delivering scientific presentations to diverse audiences. Students will design and deliver presentations of scientific data for different audience categories.

Biom 7904: Ultrasound Imaging Technology (Syllabus), Carl Herickhoff

Biomedical Engineering Syllabi Archive

Course Description: This course will introduce students to a variety of current and emerging methods in ultrasound imaging. Concepts will be grounded in fundamental physical principles (acoustic waves, piezoelectric transduction, diffraction, scattering) and progress to methods of array beamforming, k-space representation, and imaging system architecture. Ultrasound nonlinearity, bioeffects, safety metrics, as well as Doppler (flow), harmonic, contrast-enhanced, and elastography imaging methods will also be introduced. Students will have the opportunity to observe ultrasound experiments and perform ultrasound imaging on an abdominal phantom.

Development And Application Of Guided Mode Resonance Biosensor Platforms For Highly Sensitive And Real-Time Cell Killing Assays, Seyedmohsen Vaziri

Electrical Engineering Dissertations - Archive

In this work, we developed and investigated the cancer cell killing efficacy of different instances using real-time high-sensitivity measurements facilitated by Guided-Mode Resonance (GMR) sensors. The GMR biosensor technology detects shifts in the spectral peak caused by changes in the refractive index of the surrounding medium, offering a label-free method for monitoring cellular events.

A549 cell line wild type and HER2 knockout (lung cancer cells) were exposed to different concentrations of Triton X-100 and ADC (Herceptin with αHFc-CL-DMDM). The GMR-based cell killing assay demonstrated exceptional sensitivity and specificity, with shifts in wavelength exhibiting a robust correlation with cell viability and …

Strategies To Mitigate Efflorescence In Walls Constructed Using Clays Bricks; A Review Article, Marwa Abdulkareem. Anber, Soran Abdulrahman Ahmad, Naros Rahman Mahmoud, Kawan Fuoad. Kayani, Mohammed Ali Abdulrehman

Al-Esraa University College Journal for Engineering Sciences

_{The construction of buildings, especially residential housing for communities, is a significant industry on a global scale. Masonry units such as bricks, blocks, and stones are often utilized materials. Bricks are highly regarded because to their widespread availability, cost-effectiveness, and excellent insulating capabilities. Nevertheless, the presence of efflorescence presents a difficulty in the construction of brick walls. Efflorescence refers to the process in which salts move to the outer layer of the brick, resulting in the formation of white deposits and negatively impacting its visual appeal. Efflorescence is caused by various circumstances, such as the existence of salts in bricks, …}

Biom 2720: Experimental Design And Analysis For Biomedical Engineering (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Description: Application of probability, statistics, error analysis, uncertainty in design and performance of biomedical engineering experimentation; discussion and evaluation of common experimental designs for medical device development.

Biom 4720/6720: Bioelectricity (Syllabus), Amy Curry

Biomedical Engineering Syllabi Archive

Course Description: Bioelectricity, including calculations of potential fields resulting from cardiac or neural electrogeneration; treatment of how heart and nerves generate and propagate electrical signals.

The Importance Of Cryptography In Cloud Computing, Saja Alaam Talib

Al-Esraa University College Journal for Engineering Sciences

Cloud computing has grown as a widely accepted concept simultaneously, as the alarms for the security of data and information. This paper seeks to establish the comprehensive roles of cryptography in tackling these issues in the Cloud environment. The study begins with the historical background of cryptography and then moves on to analyze trends in information technology before discussing on the challenges to security in cloud computing. The goal of its publication is to highlight the importance of using cryptographic technologies for the protection of information confidentiality, its integrity and compliance. The combination of literature review and the case study …

Dihydroethidium-Derived Fluorescence In Electrically Stressed Cells Indicates Intracellular Microenvironment Modifications Independent Of Ros, Esin B. Sözer, Iurii Semenov, P. Thomas Vernier

Bioelectrics Publications

Intracellular reactive oxygen species (ROS) generation is widely suggested as a trigger for biological consequences of electric field exposures, such as those in electroporation applications. ROS are linked with membrane barrier function degradation, genetic damage, and complex events like immunological cell death. Dihydroethidium (DHE) is commonly used to monitor ROS in cells. DHE is linked to intracellular ROS by a primary oxidation product, Ethidium (Eth⁺), that shows increased fluorescence upon binding to polynucleotides. We observed changes in DHE-derived fluorescence in Chinese hamster ovary (CHO) cells post 300-ns electric pulse exposures, comparing them to tert-butyl-hydroperoxide (t-BHP) induced oxidative stress. …

Synergistic Effects Of Nanosecond Pulsed Plasma And Electric Field On Inactivation Of Pancreatic Cancer Cells In Vitro, Edwin A. Oshin, Zobia Minhas, Ruben M. L. Colunga Biancatelli, John D. Catravas, Richard Heller, Siqi Guo, Chunqi Jiang

Bioelectrics Publications

Nanosecond pulsed atmospheric pressure plasma jets (ns-APPJs) produce reactive plasma species, including charged particles and reactive oxygen and nitrogen species (RONS), which can induce oxidative stress in biological cells. Nanosecond pulsed electric field (nsPEF) has also been found to cause permeabilization of cell membranes and induce apoptosis or cell death. Combining the treatment of ns-APPJ and nsPEF may enhance the effectiveness of cancer cell inactivation with only moderate doses of both treatments. Employing ns-APPJ powered by 9 kV, 200 ns pulses at 2 kHz and 60-nsPEF of 50 kV/cm at 1 Hz, the synergistic effects on pancreatic cancer cells (Pan02) …