Biomedical Engineering and Bioengineering Commons^™

Designing A Visual Control Framework Based On Feature Point Analysis To Guide Robots In Uncharted Areas, Isam Sadiq Rasham Al-Ghadhbawi

Al-Esraa University College Journal for Engineering Sciences

Image processing may be made more accurate and efficient with the use of optical processing technologies. In order to make better design judgments early in the package design process, visual packaging art simulation aims to swiftly develop realistic packaging effects. Conventional simulation techniques frequently yield findings that are neither realistic or detailed, and they also take a lot of time and human resources. Optical processing-based machine vision technology can fully utilize computer vision and image processing techniques to simulate package designs accurately and efficiently. This research proposes a foundation for machine vision technologies based on image optical processing. Real package …

Designing A Use-Error Robust Machine Learning Model For Quantitative Analysis Of Diffuse Reflectance Spectra, Allison Scarbrough, Keke Chen, Bing Yu

Biomedical Engineering Faculty Research and Publications

Significance

Machine learning (ML)-enabled diffuse reflectance spectroscopy (DRS) is increasingly used as an alternative to the computation-intensive inverse Monte Carlo (MCI) simulation to predict tissue’s optical properties, including the absorption coefficient,μaand reduced scattering coefficient,μs′.

Aim

We aim to develop a use-error-robust ML algorithm for optical property prediction from DRS spectra.

Approach

We developed a wavelength-independent regressor (WIR) to predict optical properties from DRS data. For validation, we generated 1520 simulated DRS spectra with the forward Monte Carlo model, whereμa=0.44to2.45cm−1, andμs′=6.53to9.58cm−1. We introduced common use-errors, such as wavelength miscalibrations and intensity fluctuations. Finally, we collected 882 experimental DRS images from 170 …

A 3d Co-Culture Model Of Senescent Cell Burden And Salivary Gland Fibrosis, Stephen Rose

Electronic Theses & Dissertations (2024 - present)

Patients with head and neck cancer often suffer collateral radiation damage to the salivary glands, leading to fibrosis. Histological examinations indicate that radiation encourages fibrosis by promoting cellular changes leading to both senescent and myofibroblast phenotypes, coupled with a significant loss of regenerative and acinar cells. Chronic hypofunction remains a primary concern, even with modified radiation approaches to sparing salivary glands. Current treatments primarily offer symptomatic relief without rectifying irreversible glandular tissue damage. This limitation arises, in part, from a deficiency in predictive preclinical models to study this multifaceted problem.

We introduce a 3D in vitro microtissue model to address …

The Effects Of Bilateral Stimulation On Motor Learning, Shania Rehmudin

Dissertations and Theses

Motor learning is a set of complex processes aimed at learning and refining new skills by practicing them. There are three proposed stages of motor learning: cognitive, associative, and autonomous. While all stages are crucial, research suggests that the cognitive stage holds particular significance, laying the foundational groundwork for effective skill acquisition. Although research has explored many innovative ways to facilitate motor memory, to our knowledge, none has explored the optimization of motor skill learning through manipulating the focus of attention using bilateral stimulation. Therefore, this study explored the effects of bilateral stimulation on squat skill acquisition. Nineteen (19) subjects, …

Improving Neuropathological Analysis With Aβgan: Addressing Morphology Imbalance For Efficient Alzheimer's Disease Diagnosis, Sujatha Alla, Prasanthi Chidipudi, Nagesh Bheesetty, Vedvikash Reddy Velur, Joshit Mohanty, Puneeth Bheesetty, Marisha Jmukhadze, Narendra Lakshmana Gowda, Sai Gireesh Komaragiri

Engineering Management & Systems Engineering Faculty Publications

Histopathologists are experiencing a digital revolution in their field thanks to the digitization of Whole Slide Images (WSIs), which are microscope slides of tissue that can measure gigapixels in size. With so much high resolution data at their disposal, computer vision techniques can now be used to automate laboratory processes, create visual standards, and increase analysis throughput, all of which reduce the workload of pathologists [1]. The "gold" standard in neuropathology, particularly for Alzheimer's Disease- is pathological diagnosis made by looking at White Matter Inclusions (WSIs) in brain tissue. Semi-quantitative scoring in accordance with the standards established by the Consortium …

Fluid Dynamics And Leukocyte Transit In The Lymphatic System, Huabing Li, Jingjing Zhang, Timothy Padera, James W. Baish, Lance Munn

Faculty Journal Articles

The lymphatic system plays a vital role in maintaining fluid balance in living tissue and serves as a pathway for the transport of antigen, immune cells, and metastatic cancer cells. In this study, we investigate how the movement of cells through a contracting lymphatic vessel differs from steady flow, using a lattice Boltzmann-based computational model. Our model consists of cells carried by flow in a 2D vessel with regularly spaced, bi-leaflet valves that ensure net downstream flow as the vessel walls contract autonomously in response to calcium and nitric oxide levels regulated by stretch and shear stress levels. The orientation …

การพัฒนาแผ่นปิดแผลที่มีโปรตีนกาวไหมและสารสกัดจากอบเชยสำหรับแผลติดเชื้อ, สิริพร ปิยะพันธ์

Chulalongkorn University Theses and Dissertations (Chula ETD)

โปรตีนกาวไหม (Silk sericin) เป็นโปรตีนจากธรรมชาติ ซึ่งเป็นวัสดุเหลือทิ้งจากการสกัดรังไหมเอาเส้นใยไหม (Silk fibroin) ไปใช้ โปรตีนกาวไหมถูกนำมาใช้ประโยชน์อย่างแพร่หลายในงานทางการแพทย์ ไม่ว่าจะเป็นงานด้านการนำส่งยา สเต็มเซลล์ การสร้างเนื่อเยื่อใหม่ แผ่นปิดแผล ในรูปแบบของ แผ่นฟิล์ม (film) ไฮโดรเจล (hydrogel) โครงเลี้ยงเซลล์ (scaffold) หรืออนุภาคระดับไมโคร/นาโน เป็นต้น ในงานวิจัยชิ้นนี้ผู้วิจัยมีความสนใจที่นำโปรตีนกาวไหมมาขึ้นรูปเป็นแผ่นปิดแผล ร่วมกับการใช้พอลิไวนิลแอลกอฮอล์และกลีเซอรีน ด้วยการเชื่อมขวาง 2 รูปแบบ คือ การเชื่อมขวางทางกายภาพโดยกระบวนการ freeze-thaw และการเชื่อมขวางทางเคมีด้วยสารเชื่อมขวางกลูตาราลดีไฮด์ (glutaraldehyde) และทำการศึกษาคุณสมบัติต่างๆ จากการศึกษา พบว่า แผ่นปิดแผลที่ขึ้นรูปได้ทั้ง 2 แบบ มีรูพรุนกระจายอยู่ทั่วทั้งแผ่น โครงสร้างภายในจับกันเป็นโครงข่ายได้เป็นอย่างดี ผลการวิเคราะห์หมู่ฟังก์ชัน ปรากฎว่า พบหมู่ amide I ที่ 1618-1640 cm-1 (C=O stretching) หมู่ amide II ที่ 1518-1638 cm-1 (N-H bending and C-N stretching) และ หมู่ amide III ที่ 1238 cm-1 (C-N and C=O stretching) จากแผ่นปิดแผลทุกชนิด โดยในแผ่นปิดแผลที่ใช้สารเชื่อมขวางกลูตาราลดีไฮด์จะพบ peak ที่2830 -3000 cm-1 ซึ่งแสดงถึงพันธะ C-H ของหมู่อัลดีไฮด์กับหมู่แอลคิล การทดสอบสมบัติเชิงกล (mechanical property) แสดงให้เห็นว่า การเชื่อมขวางทั้ง 2 วิธี ทำให้ค่ามอดูลัสของยัง (Young’s modulus) เพิ่มขึ้น แผ่นปิดแผลสามารถทนต่อการเปลี่ยนแปลงรูปร่างได้มากขึ้น และการเชื่อมขวางทางกายภาพยังทำให้ระยะยืดที่จุดขาด (elongation at break) ของแผ่นปิดแผลสูงขึ้น แต่ในขณะเดียวระยะยืดที่จุดขาด (elongation …

Integrating Therapy Into Play: Stand-On Ride-On For A Child With Cerebral Palsy, Kira Flanagan

UNF Graduate Theses and Dissertations

This study focuses on the development of an adaptive ride-on toy specifically designed for a 2.5-year-old child with spastic diplegic cerebral palsy. As a feasibility study, the primary objective of this innovative device is to enhance motor function, foster autonomy, and improve the overall quality of life for the child. The Power Mobility Device (PMD) integrates actuation and steering modifications, and a harness mechanism tailored to meet the child's unique needs. Comprehensive assessments of the child's spatiotemporal gait characteristics were conducted before and after a three-month usage period. The results reveal significant improvements in the child's ability to control dynamic …

Compton Scattering Of Mammographic Soft X-Ray Beams By Alkali And Transition Metal Salt Filters Produce X-Ray Interference Zones That May Have Treatment Potential For Localized Cancer Lesions, Subhendra N. Sarkar, Eric Lobel, Sabina Rakhmatova, Derbie Desir, Somdat Kissoon, Daler Djuraev, Katie Tam

Publications and Research

In breast x-ray imaging scattered radiation adds 50% of harmful radiation dose from anisotropic Compton scattering mechanism. We have been working with double layered inorganic salt materials that can induce Compton scattering to the incident mammographic x ray beams (in 20-30 kVp range) with adequate isotropy (angular control). Typically metal nitrates and alkali halide salt layers are shown here to cause low energy radiation interference zones with high and low photon intensities and local flux heterogeneity in terms of flux covariance. Spatial variation of low energy photon flux creates concentrated and sparse radiation zones that may be used to induce …

Unlv Title Iii Aanapisi & Mcnair Scholars Institute Research Journal 2024, Jesica Godinez-Paredes, Kian Hassankhan, Apia Hickman, Robin Ruth Kee, Kevin Ayala Pineda, Briana Melendez, Kalli Ramos, Saturn L. Reyes, Fabian Leija, Selena Pepe, Silva Topchyan, Celeste Ainsley, Mayra Arzate, Jessica Balistreri, Zantana Ephrem, Mirella Jasso, Karl Panou, Nichole Pelaez, Miklo Alcala, Akshay Dave, Mey Mey Heng, Michael Finkle, Janessa Montenegro, Reynafe Naol Aniga, Victor Mejia, Angelica G. Diaz, Anayeli Flores-Garibay, Kari Lee Joe Goold, Samantha Hernandez, Lianelys Cabrera Martinez, Caitlin Reynolds, Kimberly N. Usbeck, Abdulrahman Alahdal, Angelica Diaz, Willaine Mae Kahano, Raquel Jackson, Cecia Ruiz-Hernandez, Kers Ung-Watson, Yessenia Henriquez, Vanessa Marie Booth, Alexia Brown, Darlyn Magana, Bianca Navarro, Nicholas Pereira, Gia Renemae Calip, Lucky Heng, Ralph Sagun, Lucas Abreu, Alexandra Maria Acosta, Tristan Benally, Cosset Hernandez Pena, Adrian Montenegro, Cierra Paaaina-Daquioag, Nicole Torosian, Tracy Fuentes, Julissa Martinez, Medina Mcallister, Michal Newhouse-Van Vlerin, Tiria Carr, Nima Abkenar, Isabella Aceituno, Yuhan Bi, Victoria Campos, Melika Cummings, Zachary J. Johnigan, Alexis Sotolongo-Marin

McNair Journal

Journal articles based on research conducted by undergraduate students in the AANAPISI, LSAMP, and McNair Scholars Program.

Table of Contents

About AANAPISI

Dr. Chris Heavey, Interim President

Dr. Keith Rogers, Vice President for Student Affairs

Ms. Zhanna Aronov, Associate Vice President for Retention & Outreach

Genetic Engineering Of Escherichia Coli For The Production Of Riboflavin, Adeyemi Adesanwo

Graduate Research Theses & Dissertations

Riboflavin, a water-soluble vitamin B2, is essential for the growth and reproduction of living organisms. However, humans and animals lack a riboflavin synthesis pathway and must rely on diets derived from plants and microbes for this essential vitamin. To meet our needs for vitamin B2, industrial riboflavin production is currently being pursued using strains of Bacillus subtilis. The fermentation process is successful, but improvements are needed for better substrate-to-product conversion yield. To this end, it is imperative to develop alternative microbial strains for cost-effective riboflavin production.

Due to its simple growth requirement, well-understood genetic background, and widely available genetic tools, …

Transparent And Conductive Gallium Oxide Electrode For Simultaneous Recording And Optogenetic Stimulation, Christopher Patrick Carey

Graduate Theses, Dissertations, and Problem Reports (ETD)

Neural electrode technology has been around for centuries since the times of Galvani. In early electrophysiology experiments metal wires were used to induce contractions in dissected animals. The metal wire electrode has since been a standard tool to both stimulate and record neural activity. In the past two decades, a new strategy for neural stimulation has been formulated based on the emergent field of optogenetics. Optogenetics refers to the use of light-sensitive proteins genetically imbedded in the membrane of a neuron to elicit neural activity. This technique offers more selectivity in the stimulation of neurons. Typical optogenetic neural electrodes, or …

Development Of Glutathione-Responsive Disulfide-Containing Poly(Beta-Amino Esters) With Varied Hydrophilicity And Acrylate Functionality, Anastasiia Aronova

Theses and Dissertations--Chemical and Materials Engineering

Smart biomaterials are becoming promising for therapeutic deliveries due to their ability to respond to changes in the environment. Redox-responsive hydrogels are a promising type of smart polymer that can swell and degrade according to cellular oxidative stress levels. Glutathione, abundant in cells, is crucial in redox-responsive biomaterials, serving as a key reactive molecule. This study explored the degradation kinetics of glutathione-responsive poly(β-amino ester) (PBAE) polymers created through a single-step Michael addition. We examined how disulfide content influences the degradation kinetics of these PBAE networks. Additionally, we investigated how the hydrophilicity and functionality of acrylate affect the degradation of disulfide-containing …

Sustained Release Systems For Endometrial Cancer, Claire E. Rowlands

Theses and Dissertations--Chemical and Materials Engineering

Endometrial cancer (EC) is the sixth most common cancer in women worldwide and is the most common cancer of female reproductive organs. From 2007-2016 there has been a global rise in incidence of EC of 1.3 %. Typically, EC is treated with surgery, but at later stages surgery is less effective requiring chemotherapy and/or radiation therapy. These treatment options are less effective than surgery and there are very few FDA approved chemotherapies for EC. The minuscule number of effective treatment options as well as an increase in incidence shows the need for creating improved treatments for EC. There has been …

Balloon Model For Water Vapor Ablation Of Non-Muscular Invasive Bladder Cancer Cells, Jennifer Mussell

Dissertations and Theses

Bladder cancer has a considerable issue with multiple recurrences of tumors, and current treatments are unable to adequately address these concerns. This results in continuous surveillance. Ablation, or killing, of bladder cancer cells is often incomplete and results in a high probability of recurrence. This paper aims to evaluate a potential method of ablation using a model that simulates a bladder and what conditions are needed for optimal quality and depth penetration. This balloon model for water vapor ablation is intended to simulate bladder cancer cells and determine if this is a viable avenue for future research. A device from …

Mivt: Medical-Informed Vision Transformer For Early Epilepsy Diagnosis, Md Masum Rana

Dissertations and Theses

Epilepsy is a neurological disorder characterized by recurrent, unprovoked seizures, and early diagnosis is crucial for effective management and treatment. However, the diagnosis of epilepsy, particularly in its early stages, remains challenging due to the subtle nature of seizures and the complexity of brain activity patterns. In this research, we introduce the Medical-Informed Vision Transformer (MIVT), a deep learning architecture specifically designed to improve early epilepsy diagnosis from multimodal neuroimaging data. Our model integrates insights from both medical knowledge and state-of-the-art Vision Transformers (ViTs) to enhance the accuracy and interpretability of seizure detection and localization. The MIVT leverages the rich …

Nanosecond Pulsed Electric Fields Increase Antibiotic Susceptibility In Methicillin-Resistant Staphylococcus Aureus, Alexandra E. Chittams-Miles, Areej Malik, Erin B. Purcell, Claudia Muratori

Bioelectrics Publications

Staphylococcus aureus is the leading cause of skin and soft-tissue infections (SSTIs). SSTIs caused by bacteria resistant to antimicrobials, such as methicillin-resistant S. aureus (MRSA), are increasing in incidence and have led to higher rates of hospitalization. In this study, we measured MRSA inactivation by nanosecond pulsed electric fields (nsPEF), a promising new cell ablation technology. Our results show that treatment with 120 pulses of 600 ns duration (28 kV/cm, 1 Hz), caused modest inactivation, indicating cellular damage. We anticipated that the perturbation created by nsPEF could increase antibiotic efficacy if nsPEF were applied as a co-treatment. To test this …

On The Modes Of Nanosecond Pulsed Plasmas For Combustion Ignition Of Quiescent Ch₄-Air Mixtures, Chunqi Jiang, Akash C. Dhotre, Meimei Lai, Sayan Biswas, James R. Macdonald, Isaac W. Ekoto

Bioelectrics Publications

The effect of transient plasma modes on ignition kernel development are discussed here for a quiescent CH₄-air combustion model system. A 10 ns high-voltage pulse was applied to a pin-to-pin electrode in lean fuel-air mixtures at room temperature and atmospheric pressure. High-impedance streamer, transient spark and low-impedance spark discharges were identified based on pulse waveforms of voltage and current. A sustained ignition kernel expansion was observed when the plasma discharge transitioned into a transient spark or spark discharge. The minimum ignition energy was obtained at the transient spark mode, which has less than a third of the energy …

Simultaneous Evaluation Of Tibiofemoral And Patellofemoral Mechanics In Total Knee Arthroplasty: A Combined Experimental And Computational Approach, Yashar A. Behnam, Ahilan Anantha Krishnan, Hayden Wilson, Chadd W. Clary

Center for Orthopaedic Biomechanics: Faculty Scholarship

Contemporary total knee arthroplasty (TKA) has not fully restored natural patellofemoral (P-F) mechanics across the patient population. Previous experimental simulations have been limited in their ability to create dynamic, unconstrained, muscle-driven P-F articulation while simultaneously controlling tibiofemoral (T-F) contact mechanics. The purpose of this study was to develop a novel experimental simulation and validate a corresponding finite element model to evaluate T-F and P-F mechanics. A commercially available wear simulator was retrofitted with custom fixturing to evaluate whole-knee TKA mechanics with varying patella heights during a simulated deep knee bend. A corresponding dynamic finite element model was developed to validate …

Dna I-Motifs: Biophysical Characterization And Structure-Property Correlation As Foundation For Functional Material Design, Alexander Minasyan

Graduate Research Theses & Dissertations

Over the past decades, nucleic acids have emerged as crucial frameworks with significance in biological systems and functional material engineering. Cytosine-rich deoxyribonucleotide sequences can form quadruplex structures a.k.a. i-motifs. Recently, i-motifs have attracted scientific interest in biological and material design areas.

In this work, we systematically investigate an effect of structured and unstructured modifications such as hairpins, stems, loops and overhangs on the kinetic and thermodynamic properties of DNA i-motifs. We demonstrate that the modifications can influence i-motif’s stability and folding/unfolding rates: thus, double stranded stems and hairpins are the best at stabilizing i-motifs and increasing kinetic rates of folding. …