Biomedical Engineering and Bioengineering Commons^™

Long-Term Simulation Of Stem Cell Mechanobiology, Manoochehr Rabiei

Mechanical and Aerospace Engineering Dissertations - Archive

An accurate representation of cellular mechanobiology necessitates the inclusion of subcellular elements characterized by minute masses and dimensions. These minute objects yield multiscale dynamic models with disproportionate terms, which require inordinate amounts of computational time to simulate. The computational requirements limit the time span of the simulation to time histories shorter than one second, even when employing supercomputers. This work presents a high-speed approach to simulating the mechanobiology of stem cells. The proposed approach separates the computational time from the size, and distribution, of masses of the subcellular elements, enabling the simulation of weeks-long cellular processes within hours on a …

Human System Composite Performance Measures: General Systems Performance Theory Insights, Lawrence Disalvi

Bioengineering Dissertations - Archive

Composite Performance Measures (CPMs) of human performance are widely employed in applications that range from mundane to life-changing, yet they are frequently presented without explanation or reference to theoretical underpinnings. The conceptual soundness of a widely used CPM approach, based on additive combination of constituent components, has been called into question by Kondraske. He argues the relevance of General Systems Performance Theory (GSPT) and performance capacity envelope concepts when applied to multidimensional CPM measures.

To obtain evidence-based answers to assertions regarding CPM types and rationale employed in medical and non-medical contexts, a Systematic Descriptive Review was conducted. Separately, the GSPT-based …

Algorithm Development For Analysis Of Optical Time-Series Data Generated By Biomodal Optical-Electrical Nanopore Sensor, Yu-Shiuan Huang

Bioengineering Theses - Archive

Nanopore biosensors have played an essential role in the scientific investigation of DNA, RNA, proteins, and other bio-analytes. Traditional nanopore biosensors detect variations in electrical current conductance caused by the analyte blocking the current passing transiently through a nano-sized aperture, i.e., the nanopore. This electrical data provides information about the amount of current blockage when the analyte is inside the nanopore and the time it takes for analytes to travel through the nanopore (translocation time). The translocation time of analytes in standard nanopore measurements is typically very short, usually tens of microseconds, limiting the accuracy of measuring the analytes’ characteristics. …

Computational And Experimental Analysis Of Silica Nanoparticles Under Dc And Ac Electric Fields Using A Self-Induced Back Action Actuated Nanopore Electrophoresis (Sane) Sensor, Homayoun Asadzadeh, Scott Renkes, George Alexandrakis, Minjun Kim, Scott Turpin

Bioengineering Dissertations - Archive

In this dissertation I have studied a novel single-molecule nanosensor that integrates a Solid-State Nanopore (SSNP), milled in silicon nitride with a Double Nanohole (DNH) nanoaperture, milled in gold. This device leverages Self-Induced Back-Action (SIBA) for optical trapping with ssNP electrical sensing and is called the SIBA-Actuated Nanopore Electrophoresis (SANE) sensor. My lab has previously shown that simultaneous acquisition of bimodal optical and direct current (DC) electrical signatures enables more detailed characterization of nanoscopic analytes compared to using electrical data alone, which are typically collected by ssNP sensors. In this work I have first studied by COMSOL Multiphysics simulations the …

Spray-On Sensor Formulations That Enable Detection Of Physical And Chemical Stimuli, Priyanka Shiveshwarkar

Bioengineering Dissertations - Archive

Polydiacetylene based materials have been used for a variety of liquid phase sensing applications. There remains a need for low cost, easy-to-read gas phase sensors for continuous monitoring of physiological parameters and environmental hazards at work or at home. Such sensors could have applications in everyday life, for example as point-of-care or at home testing devices to enable early detection of disease to reduce healthcare costs. Making accessible and non-invasive technologies for monitoring of health and health risks provides individuals with the ability to be proactive in regard to their health and safety. In other examples, environmental monitoring systems could …

Development Of Anti-Microbial Nanocoatings On Metallic Surfaces To Prevent Infections, Luis Fernando Soto Garcia

Bioengineering Dissertations - Archive

Healthcare-associated infections have a prevalence of about 7% in the United States and up to 50% in some developing nations. They not only present a constant risk for inpatients and healthcare workers but are also a serious challenge to human health services worldwide. These infections can be transmitted via contaminated non-critical surfaces like doorknobs and bedrails, which are routinely cleaned with low-level disinfectants approved by the U.S. Environmental Protection Agency. However, this strategy has limited efficacy since recontamination occurs, resulting in these surfaces again becoming vectors of infection. In this work, we addressed this issue by developing a self-disinfecting nanocomposite …

Mechanisms For Regenerative Intervertebral Disc Healing During Early Growth In Mice, Danielle N. D'Erminio

Dissertations and Theses

Annulus Fibrosus (AF) defects of intervertebral discs (IVDs) cause painful disability, for example when herniated tissue compresses against adjacent nerves. Discectomy, the current standard of treatment to address herniation, does not repair AF defects and can result in re-herniation and recurrent pain. As such there is a need for improved AF repair strategies. It has previously been established that neonatal mice functionally regenerate following severe AF injury providing a model of successful innate AF repair processes that contrasts the poor healing of adult mice. This dissertation focuses on identifying mechanisms of AF regenerative healing in neonatal mice subjected to severe …

Biom 3710: Physiological Systems And Modeling (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Fundamentals of control theory and mathematical modeling and analysis as applied to physiological systems.

Biom 4802/6802: Assertion-Evidence Model For Presentations In Engineering And Science (Syllabus), Amber Jennings

Biomedical Engineering Syllabi Archive

Course Description: This course will provide training and practice in delivering scientific presentations to diverse audiences. Students will design and deliver presentations of scientific data for different audience categories.

Biom 7904: Ultrasound Imaging Technology (Syllabus), Carl Herickhoff

Biomedical Engineering Syllabi Archive

Course Description: This course will introduce students to a variety of current and emerging methods in ultrasound imaging. Concepts will be grounded in fundamental physical principles (acoustic waves, piezoelectric transduction, diffraction, scattering) and progress to methods of array beamforming, k-space representation, and imaging system architecture. Ultrasound nonlinearity, bioeffects, safety metrics, as well as Doppler (flow), harmonic, contrast-enhanced, and elastography imaging methods will also be introduced. Students will have the opportunity to observe ultrasound experiments and perform ultrasound imaging on an abdominal phantom.

Guardians Of The Catheters, Interprofessional Collaboration Reduced Cauti Rates At Phfh, Dawn Doud, Angela Shemwell, Stephanie Brown, Tobi Bryan, Georgia Gauron, Tasha Anisimov, Peter Weitzman, Emma Peterson, Tiffanie Rampley

Articles, Abstracts, and Reports

Abstract Title: A Quality Improvement Project to Reduce CAUTIs on Inpatient Units

Objectives:

1. Participants will be able to understand how interprofessional collaboration contributed to CAUTI reduction on inpatient acute care units.
2. Participants will be able to understand education nurses completed to reduce CAUTI rates on inpatient acute care units.

Purpose/Aims:

To reduce CAUTI rates for adult inpatients admitted to the acute care units: Progressive Care Unit (PCU), Surgical/Orthopedics, Medical/Oncology, and the Intensive Care Unit (ICU).

Background

An increase in CAUTI rates for adults admitted to inpatient units was identified in January of 2024. The CAUTI rate at that time was …

Development Of A Modular Lab Automation System With Applications To Animal And Bacteria Cell Culture, Timothy William Hartman

Dissertations and Theses

The challenges faced while executing wet lab protocols encourage the development of automation systems to come alongside human scientists. Today’s cutting-edge experiments involve complex protocols with precise measurements usually performed manually. Even simpler biological protocols can be tedious and prone to error, as was seen during the COVID-19 pandemic and society’s demand for high-volume, rapid sample analysis. Moreover, reproducibility suffers when there is excessive variability and insufficient data. Here, we leveraged the Stanford Biodesign process to develop a modular lab automation system and image analysis workflow to address challenges like these. This flagship automation platform at The University of South …

Development And Application Of Guided Mode Resonance Biosensor Platforms For Highly Sensitive And Real-Time Cell Killing Assays, Seyedmohsen Vaziri

Electrical Engineering Dissertations - Archive

In this work, we developed and investigated the cancer cell killing efficacy of different instances using real-time high-sensitivity measurements facilitated by Guided-Mode Resonance (GMR) sensors. The GMR biosensor technology detects shifts in the spectral peak caused by changes in the refractive index of the surrounding medium, offering a label-free method for monitoring cellular events.

A549 cell line wild type and HER2 knockout (lung cancer cells) were exposed to different concentrations of Triton X-100 and ADC (Herceptin with αHFc-CL-DMDM). The GMR-based cell killing assay demonstrated exceptional sensitivity and specificity, with shifts in wavelength exhibiting a robust correlation with cell viability and …

Strategies To Mitigate Efflorescence In Walls Constructed Using Clays Bricks; A Review Article, Marwa Abdulkareem. Anber, Soran Abdulrahman Ahmad, Naros Rahman Mahmoud, Kawan Fuoad. Kayani, Mohammed Ali Abdulrehman

Al-Esraa University College Journal for Engineering Sciences

_{The construction of buildings, especially residential housing for communities, is a significant industry on a global scale. Masonry units such as bricks, blocks, and stones are often utilized materials. Bricks are highly regarded because to their widespread availability, cost-effectiveness, and excellent insulating capabilities. Nevertheless, the presence of efflorescence presents a difficulty in the construction of brick walls. Efflorescence refers to the process in which salts move to the outer layer of the brick, resulting in the formation of white deposits and negatively impacting its visual appeal. Efflorescence is caused by various circumstances, such as the existence of salts in bricks, …}

Biom 2720: Experimental Design And Analysis For Biomedical Engineering (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Description: Application of probability, statistics, error analysis, uncertainty in design and performance of biomedical engineering experimentation; discussion and evaluation of common experimental designs for medical device development.

Biom 4720/6720: Bioelectricity (Syllabus), Amy Curry

Biomedical Engineering Syllabi Archive

Course Description: Bioelectricity, including calculations of potential fields resulting from cardiac or neural electrogeneration; treatment of how heart and nerves generate and propagate electrical signals.

The Importance Of Cryptography In Cloud Computing, Saja Alaam Talib

Al-Esraa University College Journal for Engineering Sciences

Cloud computing has grown as a widely accepted concept simultaneously, as the alarms for the security of data and information. This paper seeks to establish the comprehensive roles of cryptography in tackling these issues in the Cloud environment. The study begins with the historical background of cryptography and then moves on to analyze trends in information technology before discussing on the challenges to security in cloud computing. The goal of its publication is to highlight the importance of using cryptographic technologies for the protection of information confidentiality, its integrity and compliance. The combination of literature review and the case study …

Enhanced Skin Cancer Diagnosis Through Grid Search Algorithm-Optimized Deep Learning Models For Skin Lesion Analysis, Rudresh Pillai, Neha Sharma, Sheifali Gupta, Deepali Gupta, Sapna Juneja, Saurav Malik, Hong Qin, Mohammed S. Alqahtani, Amel Ksibi

Computer Science Faculty Publications

Skin cancer is a widespread and perilous disease that necessitates prompt and precise detection for successful treatment. This research introduces a thorough method for identifying skin lesions by utilizing sophisticated deep learning (DL) techniques. The study utilizes three convolutional neural networks (CNNs)-CNN1, CNN2, and CNN3-each assigned to a distinct categorization job. Task 1 involves binary classification to determine whether skin lesions are present or absent. Task 2 involves distinguishing between benign and malignant lesions. Task 3 involves multiclass classification of skin lesion images to identify the precise type of skin lesion from a set of seven categories. The most optimal …

Development Of A Two-Finger Haptic Robotic Hand With Novel Stiffness Detection And Impedance Control, Vahid Mohammadi, Ramin Shahbad, Mojtaba Hosseini, Mohammad Hossein Gholampour, Saeed Shiry Ghidary, Farshid Najafi, Ahad Behboodi

Mechanical & Aerospace Engineering Faculty Publications

Haptic hands and grippers, designed to enable skillful object manipulation, are pivotal for high-precision interaction with environments. These technologies are particularly vital in fields such as minimally invasive surgery, where they enhance surgical accuracy and tactile feedback: in the development of advanced prosthetic limbs, offering users improved functionality and a more natural sense of touch, and within industrial automation and manufacturing, they contribute to more efficient, safe, and flexible production processes. This paper presents the development of a two-finger robotic hand that employs simple yet precise strategies to manipulate objects without damaging or dropping them. Our innovative approach fused force-sensitive …

การพัฒนาเท้าเทียมที่สามารถปรับ Roll-Over Shape สำหรับผู้พิการที่มีกิจวัตรประจำวันระดับต่ำถึงปานกลาง, ณิชนันทน์ ปิดทอง

Chulalongkorn University Theses and Dissertations (Chula ETD)

งานวิจัยนี้เสนอการออกแบบเท้าเทียมแบบใหม่ที่สามารถปรับ Roll-over shape ได้สำหรับผู้พิการที่มีระดับกิจกรรมต่ำถึงปานกลาง เนื่องจากเท้าเทียมสำหรับผู้พิการที่ได้รับสิทธิเบิกจ่ายจากรัฐบาลจะเป็นเท้าเทียม SACH ซึ่งมีข้อจำกัดคือลักษณะฝ่าเท้าที่มีความแข็งและไม่สามารถงอข้อเท้าได้ จึงเป็นเหตุให้ผู้พิการมีลักษณะการเดินที่ไม่สมมาตร โดยเท้าเทียมวิจัยนี้จะสามารถปรับ Roll-over shape ตามความสูงของแต่ละบุคคล เพื่อพัฒนาความสมมาตรในการเดินให้ดีขึ้น การออกแบบเท้าเทียมจะคำนึงถึงปัจจัยต่างๆ เช่น ความยาวเท้า น้ำหนัก และส่วนสูง ซึ่งส่วนสูงเป็นปัจจัยสำคัญที่ส่งผลต่อ Roll-over shape ดังนั้นเท้าเทียมจึงได้รับการพัฒนาให้สามารถปรับ Roll-over shape ได้เพื่อรองรับผู้พิการที่มีส่วนสูงที่แตกต่างกัน การทดสอบความแข็งแรงและ Roll-over radius ทำโดยวิธีการวิเคราะห์ไฟไนต์เอลิเมนต์ด้วยโปรแกรม ANSYS 2021R2 และมีการทดสอบการเดินกับผู้พิการจริงแบบ Single Pilot Study เพื่อทดสอบประสิทธิภาพของเท้าเทียมวิจัยกับความสมมาตรของการเดิน เท้าเทียมวิจัยนี้ถูกออกแบบให้สามารถปรับ Roll-over radius ได้ 289 297 และ 323 มม. ตามลำดับ และจากการทดสอบการเดินกับผู้พิการพบว่าดัชนีสมมาตรจะเพิ่มขึ้นเมื่อปรับเท้าเทียมให้มี Roll-over radius ที่มากขึ้น โดยมีค่าดัชนีความสมมาตรของ Roll-over radius 289 297 323 มม. และเท้า SACH คือ 0.03%, -0.77%, -7.12% และ -11.62% ตามลำดับ และค่าดัชนีความสมมาตรของ Step time สำหรับเท้าเทียมที่มี Roll-over radius 289 297 และ 323 มม. และเท้า SACH คือ -4.14%, -11.07%, -18.19% และ -21.30% ตามลำดับ และจากการทดสอบกับผู้พิการจริงพบว่าดัชนีความสมมาตรของเท้าเทียมที่มี Roll-over radius 289 มม. ดีกว่าเท้า SACH ในแง่ของ Roll-over radius และ Step time 99.7% …