Biomedical Engineering and Bioengineering Commons^™

Development Of A Two-Photon Imaging System, Jesseca Hollenbaugh

University Honors Theses

The objective of this project was to convert a Sarastro 2000 confocal laser scanning microscope (CLSM) into a system capable of far-field two-photon excitation (TPE) imaging for the use of the PSU Biology department. TPE microscopy operates on the ability of fluorophores to accept two photons each with half the energy of a desired transition in a single quantum event via a virtual energy state and then emit a higher energy photon upon relaxation. This is preferable to single-photon excitation (SPE) imaging due to lower photon imaging, causing less damage to delicate biological samples, as well as the inherent localization …

Naturify 2300, Yarina Yiwei Dai

Masters Theses

In my art practice, I explore the interplay between human desires to manipulate and anthropomorphize nature, as seen in the technological augmentation of plants and living entities. This investigation delves into how this intersection, alongside empathy towards these creations, contributes to fears of uncontrollability and the risks of addiction and excessive dependence on technology.

Bioengineering and genetic modification have cultivated unprecedented developments, allowing humans to manipulate the fundamental building blocks of life. My research speculates on this technology further, modifying the genetic code of organisms and creating bioengineered wearable entities with enhanced traits or entirely new functionalities. The primary objective …

Architecture As A Carbon-Based Practice, Qixin Yu

Masters Theses

Carbon serves as both a silent protagonist and a looming antagonist in the narrative of architecture, shaping not only the physical structures we inhabit but also the ecological legacy we leave behind.

Centuries of human exploitation of the environment have led to climate and material crises. Shifting this dynamic requires action at micro (matter), meso (material), and macro (materiality) levels. Biogenic materials offer significant potential for carbon sequestration and present opportunities for the building industry to collaborate with nature rather than merely extract from it.

This thesis establishes a research and manufacturing practice that prioritizes material innovation, carbon sequestration, environmental …

Computational Microscopy For Biomedical Imaging With Deep Learning Assisted Image Analysis, Yuwei Liu

Dissertations

Microscopy plays a crucial role across various scientific fields by enabling structural and functional imaging with microscopic resolution. In biomedicine, microscopy contributes to basic research and clinical diagnosis. Conventionally, optical microscopy derives its contrast from the amplitude of the optical wave and provides visualization of the physical structure of the sample qualitatively. To understand the function at the cellular or tissue level, there is a need to characterize the sample quantitatively and explore contrast mechanisms other than light intensity. Image enhancement or reconstruction from microscopic imaging systems is known as computational microscopy, and it involves the application of computational techniques …

Effects Of Exoskeletal-Assisted Walking Rehabilitation On Gait Of Patients Post Stroke, Archisha Kanchan

Theses

Stroke can have detrimental effects on one's body. Its symptoms can range from lightheadedness to blurred vision to body paralysis. One of the more common effects of stroke is difficulty walking where many of the patients who have suffered from stroke are unable to ambulate fully. To mitigate gait difficulties, patients typically follow through with various kinds of physical therapy to help with their gait movements. Recently, robotic exoskeleton (RE) walking therapy has been used as a more innovative approach to gait rehabilitation, in conjunction with other physical therapy session techniques. However, studies involving RE therapy within the stroke population …

Targeted Drug Delivery: Investigating Protein Corona Behavior, Atharva Markale

Theses

Due to high specificity and less toxicity, nanoparticles have become promising for targeted drug delivery against cancer, although they face challenges when they enter the bloodstream, making their behavior unpredictable. The deposition of proteins on nanoparticles, the protein corona, changes their biosignature, affecting their circulation, drug release potency, targeting ability, and immunogenicity. The continuous exchange of protein layers on a nanoscale is complex to analyze.

Nanoparticle tracking analysis (NTA) is a method to characterize nanoparticles in blood plasma by combining principles of light scattering microscopy and Brownian motion. In this work, time-dependent experiments with plasma were conducted to analyze the …

Passive Mechanical Properties Of Cardiac And Arterial Tissue: A Paired Comparison Study In A Calf Model, Ola Alsaadi, Jieyang Zhang, Masod Sadipour, Ali N. Azadani

DU Undergraduate Research Journal Archive

Purpose: The mechanical behavior of heart tissue plays a crucial role in elucidating cardiac physiology and pathophysiology. Accurate measurement of the mechanical properties of cardiac and arterial tissues is indispensable for advancing computer simulations and developing medical devices. This study aimed to assess the passive mechanical properties of cardiac and arterial tissue in a calf model using a paired comparison method.

Methods: A planar biaxial stretching device was used to determine the mechanical characteristics of 84 square specimens obtained from 14 different anatomical regions. Cauchy stress-Green strain curves were constructed for each anatomical area, and a Fung-type constitutive …

Comparing Proliferation Rates And Collagen Production Of Cells Treated With Cuhars, Katie Elizabeth Mckenzie

Master's Theses

Cartilage is the padding in joints that protects the bones and aids in motion. Problems with the cartilage in the knee can be caused by mechanical damage or diseases like osteoarthritis. Chondrocytes make cartilage. The objective of this study is to determine the doubling time of chondrocytes per passage. I also want to determine the base amount of collagen-II created by chondrocytes as they age. I also want to determine how long it takes CuHARS to break down in different cell medias. Chondrocytes, human dermal fibroblasts, and CRL 2303 cells were grown and cultured for over a year. During that …

Impact Of Student Beliefs And Self-Efficacy On Performance In Higher Education Stem Courses, Lauren Nicole Fogg

Doctoral Dissertations

In engineering education, students often face feelings of inadequacy, leading to academic struggles and potential dropout. This dissertation investigates the impact of interactive course materials on students' confidence and self-efficacy in problem-solving, focusing on an Engineering Materials class at Louisiana Tech University. Over four quarters, involving seven sections and 218 students, a 13-question Likert scale survey was administered repeatedly, alongside demographic data and textbook usage surveys. The study aims to compare students’ attitudes and beliefs when not using a textbook versus when using an interactive web-native book. Hypotheses suggest that the interactive book will enhance problem-solving beliefs, confidence, and grades. …

Design And Development Of Contactless Capacitive Coupled Electrodes For Cardiovascular Signal Acquisition, Ramya Lakshmi Vs

Theses and Dissertations

In biosignal acquisition and physiological monitoring, developing advanced electrode technologies is crucial in enhancing signal quality, minimizing interference, and improving overall reliability. One such innovative approach is the utilization of capacitive-coupled electrodes, a cutting-edge solution that addresses some of the challenges associated with traditional electrodes in biosignal recording.

Capacitive-based sensors have become prominent in physiological signal measurement over the past decade. The electric field from the external affects both the human body and the electrode. The primary aim while designing the capacitive electrode is to maximize the signal-to-noise ratio. Hence, we introduce shielding and guarding techniques to improve the signal-to-noise …

Robust Ai-Driven Segmentation Of Glioblastoma T1c And Flair Mri Series And The Low Variability Of The Mrimath© Smart Manual Contouring Platform, Yassine Barhoumi, Abdul Hamid Fattah, Nidhal Carla Bouaynaya, Fanny Moron, Jinsuh Kim, Hassan M. Fathallah-Shaykh, Rouba A. Chahine, Houman Sotoudeh

Henry M. Rowan College of Engineering Departmental Research

Patients diagnosed with glioblastoma multiforme (GBM) continue to face a dire prognosis. Developing accurate and efficient contouring methods is crucial, as they can significantly advance both clinical practice and research. This study evaluates the AI models developed by MRIMath© for GBM T1c and fluid attenuation inversion recovery (FLAIR) images by comparing their contours to those of three neuro-radiologists using a smart manual contouring platform. The mean overall Sørensen–Dice Similarity Coefficient metric score (DSC) for the post-contrast T1 (T1c) AI was 95%, with a 95% confidence interval (CI) of 93% to 96%, closely aligning with the radiologists’ scores. For true positive …

Structural Fiber Mesh Reinforcement Of A Polymeric Heart Valve: Improving Valve Durability And Leaflet Closure Effectiveness, Peter J. Choi, Hugo Zazueta, John A. Acevedo, Philip Park

Civil Engineering Faculty Publications

Objective: Bioprosthetic valves using either porcine or bovine pericardium have been widely used for transcatheter heart valve replacements. However, producing bioprosthetic valves is not a sustainable solution. Acquiring animal tissue is often not readily available and costly and requires time-consuming modifications. Moreover, its primary tissue failure requires reoperation after roughly 15 years. The suggested replacement of porcine and bovine leaflets with biocompatible polymers appears to be an attractive alternative to bioprosthetic valves. In this study, engineered fiber-reinforced polymers were developed, which are less degenerative and offer greater hemocompatibility in relation to mechanical valves.
Methods: Polydimethylsiloxane (PDMS) polymer reduces calcification significantly …

Facilitation In Pattern Motion Perception Of Self-Operated Stimuli Explained By Adaptive Contrast Normalization, Fulvio Missoni, Francesca Peveri, Andrea Canessa, Giulia Sedda, Vittorio Sanguineti, Silvio P. Sabatini

MODVIS Workshop

Movement can affect the way we make sense of complex visual information. To investigate this issue, we designed an experiment to assess changes of plaid motion perception threshold after a period of sensorimotor contingency experience. We found that movement training facilitates combination of elementary motion cues into a global motion percept. No changes in perceptual thresholds are observed in a passive visual condition. A Bayesian model suggested a reduction, after training, of the cross-talk between two gratings with unbalanced contrasts in corresponding sensory channels. To test plausible neural mechanisms for active reduction of cross-talk in cortical representation of complex visual …

Modeling Synergistic Effects Of Integrin And Tgf-Beta Signaling In Epithelial Mesenchymal Transition, Prerak Thakkar

Biology and Medicine Through Mathematics Conference

No abstract provided.

Redesign Of Leg Assembly For Remote Walking Training Device To Improve Gait Kinematics, Jacob Anthony

Mechanical Engineering Theses

As modern medicine has improved, the average age of patients has increased. This has cause a growing number of patients to develop disabilities over time due to spinal cord injuries and stroke among other neurological ailments. This has led to an increased interest in developing robotic exoskeletons to help patients with neuromuscular rehabilitation. However, most exoskeletons do not accurately replicate the natural human gait kinematics due to a lack of degrees of freedom at the designed knee joint. In this thesis, the leg assembly for a robotic rehabilitation (RoboREHAB) device is redesigned to improve the gait kinematics and a reinforcement …

Regular Algorythms For Synthesis Of Optimal Control Systems For Dynamic Objects, Igamberdiyev Husan, Uktam Farkhodovich Mamirov, Xankeldiyeva Zebiniso

Technical science and innovation

The article presents algorithms for the synthesis of an optimal control system for dynamic objects. As a model, we consider a differential equation of a continuous one-dimensional system in the form of a state space, which has the properties of controllability and observability. The paper shows the need to use an observation device in order to assess how the properties of the controlled system change with the slightest change in the parameters of the control object, to assess the sensitivity of the system to these changes. When finding a solution to the equation formulated to find the parameters of the …

Data-Driven Insights Into Spatial Patterns And Disease Etiologies Of White Matter Hyperintensities, Sugandha Roy

McKelvey School of Engineering Graduate Student Theses & Dissertations

In this thesis, we have applied Orthogonal Projective Non-Negative Matrix Factorization (opNMF) to identify spatial patterns of white matter hyperintensities (WMH) within UK Biobank's imaging data. Our selection criteria excluded subjects with a history of neurological, mental, and specific cerebrovascular conditions, allowing us to focus on WMH patterns in a healthy aging population. We have interrogated the association of location-specific WMHs with a variety of demographic, clinical, and genetic factors. Our multivariable regression analysis evaluates the strength and nature of the associations between these factors and WMH distribution. The analysis integrates variables such as age, sex, smoking habits, medication usage …

Stimuli-Responsive Glycopolymeric Nanoparticles To Boost Tumor Immunogenicity Through Macrophage-Targeted Therapy, Oluwaseyi Shofolawe-Bakare

Electronic Theses and Dissertations

Tumor-associated macrophages (TAMs) play a substantial role in sculpting the tumor microenvironment (TME) into an immunosuppressive bastion that undermines immune surveillance and enables tumor progression. They therefore represent a promising therapeutic target to make the TME more conducive for anti-tumor immunity and greatly improve treatment outcomes in cancers that are highly resistant to conventional forms of therapy. Several medications have been developed to modulate the activities of TAMs, showing tremendous potential, but these medications lack specificity for TAMs making their use susceptible to adverse side effects that could outweigh prospective benefits. Sophisticated delivery vehicles that can preferentially deliver these medications …

An Attention Lstm U-Net Model For Drosophila Melanogaster Heart Tube Segmentation, Xiangping Ouyang

McKelvey School of Engineering Graduate Student Theses & Dissertations

Machine learning is commonly used in biomedical image analysis, as it allows automated image segmentation and identification that minimizes the need for tedious human involvement. Drosophila melanogaster is often used as a cardiac disease model, where optical coherence microscopy (OCM) is used to image and analyze its beating dynamics. As OCM often generates a large volume of images, automated image segmentation is necessary to quantify the heart beating efficiently. Our most recent heart segmentation model, FlyNet 2.0+, is a fully convolutional LSTM U-Net model. However, the performance of the model diminishes in the presence of artifacts, such as image reflection …

The Effects Of Additive Manufacturing On Canine Hind Limb Repairment Surgery, Annabel Keers

Honors Theses

The intention of this project is to explore some of the ways that additive manufacturing is affecting veterinary medicine. I will specifically be delving into canine hind limb repairment surgeries, such as cranial cruciate ligament reconstruction. 3D printed prototypes have been utilized in the human medical field for quite a while, and it has inspired such technology to expand into the world of veterinary medicine. Such emerging research is expected to take-off as the pet market grows in size and level of care for the health of our animals.

I took special interest in this field as I will be …