Biomedical Engineering and Bioengineering Commons^™

Comparison Of Brain Activity In The Prefrontal Cortex During Digit Span Task Between Student Veterans With Post Traumatic Stress Disorder And Controls Using Functional Near Infrared Spectroscopy, Bejoy Mathai

Bioengineering Theses - Archive

Near Infrared Spectroscopy (NIRS) is an optical non-invasive imaging technique which makes use of infrared light at particular wavelengths to measure the changes in concentrations of oxygenated blood haemoglobin (HbO) as well as the deoxygenated blood haemoglobin (HbR). Making use of this technique to acquire measurements during different functional activities subcategorises it into the novel and fast developing field of Functional Near Infrared Spectroscopy (fNIRS). In my study I have made use of this novel imaging technique to study the pre-frontal cortex while the subject performs the functional task of digit span task consisting of the forward digit span and …

A Database For Estimating Scanner-Specific Ct Dose, Taly Gilat-Schmidt

Biomedical Engineering Faculty Research and Publications

Purpose: To develop a database for estimating scanner-specific organ dose in a voxelized patient model for any spectral shape and angular tube current modulation setting. The database enables the estimation of organ dose for both existing and novel acquisition techniques without requiring Monte Carlo simulations.

Methods: The transport of monoenergetic photons through three phantoms was simulated with the PENELOPE Monte Carlo radiation transport routines at 5 – 150 keV in 1 keV increments at 1000 projections in 0.36 degree increments. The source-to-detector distance for each simulation was 100 cm, with a source-to-isocenter distance of 50 cm. The lateral and axial …

Instrument Independent Diffuse Reflectance Spectroscopy, Bing Yu, Henry L. Fu, Nirmala Ramanujam

Biomedical Engineering Faculty Research and Publications

Diffuse reflectance spectroscopy with a fiber optic probe is a powerful tool for quantitative tissue characterization and disease diagnosis. Significant systematic errors can arise in the measured reflectance spectra and thus in the derived tissue physiological and morphological parameters due to real-time instrument fluctuations. We demonstrate a novel fiber optic probe with real-time, self-calibration capability that can be used for UV-visible diffuse reflectance spectroscopy in biological tissue in clinical settings. The probe is tested in a number of synthetic liquid phantoms over a wide range of tissue optical properties for significant variations in source intensity fluctuations caused by instrument warm …

A Quantitative And Standardized Robotic Method For The Evaluation Of Arm Proprioception After Stroke, Lucia Simo, Claude Ghez, Lior Botzer, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

Stroke often results in both motor and sensory deficits, which may interact in the manifested functional impairment. Proprioception is known to play important roles in the planning and control of limb posture and movement; however, the impact of proprioceptive deficits on motor function has been difficult to elucidate due in part to the qualitative nature of available clinical tests. We present a quantitative and standardized method for evaluating proprioception in tasks directly relevant to those used to assess motor function. Using a robotic manipulandum that exerted controlled displacements of the hand, stroke participants were evaluated, and compared with a control …

Robotic Testing Of Proximal Tibio-Fibular Joint Kinematics For Measuring Instability Following Total Knee Arthroplasty, Wael K. Barsoum, Ho H. Lee, Trevor G. Murray, Robb Colbrunn, Alison K. Klika, S. Butler, Antonie J. Van Den Bogert

Mechanical Engineering Faculty Publications

Pain secondary to instability in total knee arthroplasty (TKA) has been shown to be major cause of early failure. In this study, we focused on the effect of instability in TKA on the proximal tibio-fibular joint (PTFJ). We used a robotics model to compare the biomechanics of the PTFJ in the native knee, an appropriately balanced TKA, and an unbalanced TKA. The tibia (n = 5) was mounted to a six-degree-of-freedom force/torque sensor and the femur was moved by a robotic manipulator. Motion at the PTFJ was recorded with a high-resolution digital camera system. After establishing a neutral position, …

Biological Effective Dose (Bed) Distribution Matching For Obtaining Brachytherapy Prescription Doses & Dosimetric Optimization For Hybrid Seed Brachytherapy, Jakub Pritz

USF Tampa Graduate Theses and Dissertations

Radioactive seed implant brachytherapy is a common radiotherapy treatment method for prostate cancer. In current clinical practice, a seed consists of a single isotope, such as ¹²⁵I or ¹⁰³Pd. A seed containing a mixture of two isotopes has been proposed for prostate cancer treatment. This study investigates a method for defining a prescription dose for new seed compositions based on matching the biological equivalent dose (BED) of a reference plan.

Ten prostate cancer cases previously treated using single isotope seeds (5 using ¹²⁵I seeds and 5 using ¹⁰³Pd seeds) were selected for this study. Verification of …

Guiding Electric Fields For Electroporation Applications, Jose Rey

USF Tampa Graduate Theses and Dissertations

Electroporation is the critical step in an electric field mediated drug or gene delivery protocol. Electroporation based protocols have been successfully demonstrated in cancer clinical trials, however, its impact in other applications is still under investigation. A significant roadblock to long term functioning of implantable biosensors in vivo is the tissue reaction in the form of fibrous encapsulation that results in reduced transport to the sensing element of the biosensor. In vivo gene electroporation has a great potential as a means to modify the transport properties of tissues in the proximity of the sensing element of implantable biosensors.

This dissertation …

Feasibility Of Wearable Sensors To Determine Gait Parameters, Mario Alves Simoes

USF Tampa Graduate Theses and Dissertations

A wearable system that can be used in different settings to collect gait parameters on subjects with a mild traumatic brain injury (mTBI) would allow clinicians to collect needed data of subjects outside of the laboratory setting. Mild traumatic brain injuries stem from a number of causes such as illnesses, strokes, accidents or battlefield traumas. These injuries can cause issues with everyday tasks, such as gait, and are linked with vestibular dysfunction [1]. Different wearable sensor systems were analyzed prior to starting this study along with relevant gait parameters associated with mild traumatic brain injury. To monitor gait parameters relevant …

A Novel Device For Cell-Cell Electrofusion, Justin T. Stewart

USF Tampa Graduate Theses and Dissertations

Cell transplantation therapy is a potentially powerful tool and can be used to replace defective cells with healthy cells. This offers the possibility of alleviating the destructive symptoms for many diseases such as Parkinson's disease, Alzheimer's disease, stroke, spinal cord trauma, Type I diabetes and many more. While there are many diseases that could be positively impacted from cell transplantation therapy, the focus of this research is insulin dependent, Type I Diabetes.

The Islets of Langerhans are composed of various types of cells located in the pancreas and are responsible for a variety of biochemical functions. Specifically, the beta Islet …

Surface Functionalization And Analysis Thereof For An Ovarian Cancer Diagnostic Biosensor, Asad Ali Ahmad

USF Tampa Graduate Theses and Dissertations

Ovarian cancer is the fifth leading cause of cancer death among women in United States and has an alarming 1.4% (1 in 71) lifetime risk. The lack of overt symptoms and the absence of a reliable screening test to detect ovarian cancer result in over 70% of women being diagnosed after the disease has spread beyond the ovary resulting in a poor prognosis. A key characteristic of ovarian cancer is the ability of tumor cells to evade apoptosis, or programmed cell death contributing to the limitless replicative potential, which is a hallmark of all carcinogenesis. There is conclusive evidence that …

Two-Dimensional Computer Model Of Human Atrial Ablation, Samineh R. Esfahani

USF Tampa Graduate Theses and Dissertations

A finite-element model of a two-dimensional slice of human atrial tissue for the study of the electrograms and propagation of action potentials is presented. Action potential propagation is described by a reaction-diffusion model coupled with the complex Courtemanche et al. atrial cell model. The effects of recording electrode size and location on electrograms are presented. Action potential propagation as a result of atrial fibrillation ablation therapy is also modeled by defining a lesion area with decreased electrical conductivity. The effect of electrical conductivity and geometry of the lesion was also studied. It is shown that the success rate of atrial …

A Multi-Species Analysis Of Biomechanical Responses Of The Head To A Shock Wave, Richard Bolander

Wayne State University Dissertations

Shock wave induced brain injury remains a field of research that has great consequences for the rehabilitation of soldiers and civilians that are exposed to an explosion. As such, for the research to be successful in developing strategies to mitigate the effects of these injuries, appropriate research methods need to be developed. Animal models are currently employed to understand the brain's response to a shock wave exposure. Unfortunately no criteria have been established that indicates in what way the mechanical inputs that the cells in an animal's brain are subjected to are similar to a human. The purpose of this …

Supercritical Carbon Dioxide-Processed Resorbable Polymer Nanocomposites For Bone Graft Substitute Applications, Kevin Baker

Wayne State University Dissertations

Numerous clinical situations necessitate the use of bone graft materials to enhance bone formation. While autologous and allogenic materials are considered the gold standards in the setting of fracture healing and spine fusion, their disadvantages, which include donor site morbidity and finite supply have stimulated research and development of novel bone graft substitute materials. Among the most promising candidate materials are resorbable polymers, composed of lactic and/or glycolic acid. While the characteristics of these materials, such as predictable degradation kinetics and biocompatibility, make them an excellent choice for bone graft substitute applications, they lack mechanical strength when synthesized with the …

Computational Simulation Of Skull Fracture Patterns In Pediatric Subjects Using A Porcine Model, Christina Devito Wagner

Wayne State University Dissertations

In cases of suspected child abuse with skeletal trauma, it is often the role of the injury biomechanist, forensic pathologist, clinical radiologist, and forensic anthropologist to determine the mechanism of injury when the child victims cannot speak for themselves. This is a challenging task, especially for the head, as comprehensive biomechanical data on skull fracture in infants and children do not currently exist, and frequently the determination regarding cause of injury is based on anecdotal evidence from the medical literature and unsubstantiated eyewitness accounts. The current process may result in unreliable autopsy interpretation and miscarriages of justice due to a …

Perforation Of Arterial Tissue Using Kilohertz Frequency Ultrasound Delivered Via Wire Waveguides, Mark Wylie, Garrett Mcguinness, Graham Gavin

Conference Papers

An emerging technology proposes the use of low frequency-high power ultrasound transmitted via wire waveguides for the disruption and ablation of atherosclerotic lesions, more specifically advanced fibrous or calcified plaques such as chronic total occlusions (CTO). This energy delivery selectively ablates rigid diseased tissue by means of direct mechanical contact, cavitation and other forces generated by the intense dynamic pressure fields generated.

The first clinical device using this energy delivery was granted FDA approval in 2007 [1] for the ablation of CTOs and most research to date has focused on ablation and disruption of hard, fibrous or calcified tissues [2]. …

On Improving Electrooculogram-Based Computer Mouse Systems: The Accelerometer Trigger, Johnalan Keegan, Edward Burke, James Condron, Eugene Coyle

Conference Papers

Eye tracking is a well-established method of computer control for profoundly paralysed people (Anson et al., 2002). Cameras are commonly used to track eye movements (Morimoto et al., 2005) but one alternative is the bioelectrical signal known as the electrooculogram (EOG). There are some EOG mouse control systems that facilitate the use of GUI applications, but certain actions, which are straightforward using a conventional mouse, remain impossible. Unless the eyes are tracking a target, they move in saccades (jumps), making it impossible to voluntarily trace out smooth trajectories with one's gaze, as would be required to draw a smooth curve. …

The Bioactivity And Ion Release Of Titanium-Containing Glass Polyalkenoate Cements For Medical Applications, A. W. Wren, N. M. Cummins, F. R. Laffir, S. P. Hudson, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

The ion release profiles and bioactivity of a series of Ti containing glass polyalkenoate cements. Characterization revealed each material to be amorphous with a T_g in the region of 650-660°C. The network connectivity decreased (1.83-1.35) with the addition of TiO₂ which was also evident with analysis by X-ray photoelectron spectroscopy. Ion release from cements were determined using atomic absorption spectroscopy for zinc (Zn^₂₊), calcium (Ca^₂₊), strontium (Sr^₂₊), Silica (Si^₄₊) and titanium (Ti4+). Ions such as Zn^₂₊ (0.1-2.0 mg/l), Ca²⁺ (2.0-8.3 mg/l,) Sr²⁺ (0.1-3.9 mg/l), and S^{i4+ …}

Locating And Extracting Acoustic And Neural Signals, Na Zhu

Wayne State University Dissertations

This dissertation presents innovate methodologies for locating, extracting, and separating multiple incoherent sound sources in three-dimensional (3D) space; and applications of the time reversal (TR) algorithm to pinpoint the hyper active neural activities inside the brain auditory structure that are correlated to the tinnitus pathology. Specifically, an acoustic modeling based method is developed for locating arbitrary and incoherent sound sources in 3D space in real time by using a minimal number of microphones, and the Point Source Separation (PSS) method is developed for extracting target signals from directly measured mixed signals. Combining these two approaches leads to a novel technology …

Spatial Variability Of Field Machinery Use And Efficiency, Viacheslav I. Adamchuk, Robert Grisso, Michael F. Kocher

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In site-specific crop management, It is a common practice to log the geographic coordinates of agricultural machinery measured using a global satellite navigation system (GNSS) such as the global positioning system (GPS). Yield, fertilizer application, and seed placement maps provide useful data for making agronomic decisions. However, the travel path itself reveals valuable information about machinery performance. Often, during field operations, odd field shapes, obstacles, or contour farming will require operators to increase the complexity of the machinery maneuvering. This usually reduces field efficiency. This chapter presents a methodology to parameterize the spatially variable characteristics of traffic patterns, and to …

Evaluation Of A Stream‐Aquifer Analysis Test For Deriving Reach‐Scale Streambed Conductance, Garey A. Fox, Derek M. Heeren, Michael A. Kizer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Extracting groundwater from pumping wells located adjacent to streams can reduce streamflow, a result that is known as alluvial well depletion. Numerous analytical solutions have been developed for alluvial well depletion that vary in their mathematical complexity. Predicted drawdown by the analytical solutions can be matched to observed drawdown from a stream–aquifer analysis (SAA) test (i.e., a pumping test adjacent to a stream) to simultaneously estimate aquifer and streambed hydrologic parameters. However, only a few SAA tests have been documented in the literature and compared to field–measured streambed parameters. Therefore, the objective of this research was to perform an SAA …