Biomedical Engineering and Bioengineering Commons^™

Implications Of Arm Restraint On Lower Extremity Kinetics During Gait, Jason T. Long, John B. Groner, Dan C. Eastwood, Timothy R. Dillingham, Prateek Grover, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Background

Literature indicates the importance of the upper extremities in providing stability and propulsion for the body during ambulation. However, the kinetic implications of upper extremity restraint during gait are not as well documented.

Aim

The objective of this study was to examine the effect of arm restraint (unilateral and bilateral) on lower extremity joint kinetics during walking.

Methods

Twenty-three healthy young participants were instrumented for three dimensional motion analysis, and tested in four randomly ordered upper extremity restraint conditions (unrestrained, bilateral restraint, right side restraint, and left side restraint). Temporal spatial parameters and gait/phase-specific lower extremity kinetics and kinematics …

Postoperative Foot And Ankle Kinematics In Rheumatoid Arthritis, Karl Canseco, Carolyne Albert, Jason T. Long, Michael Khazzam, Richard Marks, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Introduction

Rheumatoid arthritis (RA) is a systemic autoimmune disease that can cause weakening and destruction of various joints of the foot and may result in pain and deformity. This clinical presentation can cause eventual loss of function, shoe-wear difficulties, and altered gait patterns.

Purpose

The goal of this prospective study was to quantify changes in temporal-spatial parameters and multisegmental foot and ankle kinematics in a group of patients with RA of the forefoot following surgery.

Methods

Three-dimensional (3-D) motion analysis was conducted preoperatively and postoperatively using a 15-camera Vicon Motion Analysis System (Vicon Motion Systems, Inc.; Lake Forest, CA) on …

Analysis Of Push-Off Power During Locomotion In Children With Type 1 Osteogenesis Imperfecta, Joseph Krzak, Adam Graf, Ann Flanagan, Angela Caudill, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Background/Purpose

Children with type 1 osteogenesis imperfecta (OI) present with abnormal gait characteristics, including reduced power generation during pushoff. However, the exact biomechanical factors associated with reduced power generation are not clearly understood. The purpose of this study was to investigate the biomechanical factors associated with a reduction in ankle power generation in children with type 1 OI.

Methods

Twenty-four participants with type 1 OI (12.5 ± 3.6 years of age) and 24 typically developing children (12.4 ± 3.7 years of age) were evaluated. Three-dimensional gait analysis, isometric plantar flexion strength using dynamometry, and pedobarography were collected on each participant. …

Upper Extremity Joint Dynamics During Walker Assisted Gait: A Quantitative Approach Towards Rehabilitative Intervention, Katherine A. Konop, Kelly M.B. Strifling, Joseph Krzak, Adam Graf, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Background

Many children with spastic diplegic cerebral palsy (CP) use anterior or posterior walkers to aid ambulation. Prolonged use may lead to upper extremity (UE) pathology later in life, including arthritis and joint contractures.

Purpose

This study analyzes the dynamics (kinematics and kinetics) of the shoulder (glenohumeral), elbow, and wrist joints during anterior and posterior walker use. It also examines the dynamic effects of adjusting handle height and grip rotation.

Methods

Ten children with CP underwent motion analysis with upper and lower extremity marker sets and six-degree-of-freedom instrumented walker handles, while using both anterior and posterior walkers. One child underwent …

Current Research And Clinical Applications In Human Motion Analysis, Ken N. Kuo, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

No abstract provided.

A Compressed Sensing Algorithm For Sparse-View Pinhole Single Photon Emission Computed Tomography, Paul Arthur Wolf, Emil Y. Sidky, Taly Gilat Schmidt

Biomedical Engineering Faculty Research and Publications

Single Photon Emission Computed Tomography (SPECT) systems are being developed with multiple cameras and without gantry rotation to provide rapid dynamic acquisitions. However, the resulting data is angularly undersampled, due to the limited number of views. We propose a novel reconstruction algorithm for sparse-view SPECT based on Compressed Sensing (CS) theory. The algorithm models Poisson noise by modifying the Iterative Hard Thresholding algorithm to minimize the Kullback-Leibler (KL) distance by gradient descent. Because the underlying objects of SPECT images are expected to be smooth, a discrete wavelet transform (DWT) using an orthogonal spline wavelet kernel is used as the sparsifying …

Ranolazine Reduces Ca2+ Overload And Oxidative Stress And Improves Mitochondrial Integrity To Protect Against Ischemia Reperfusion Injury In Isolated Hearts, Mohammed Aldakkak, Amadou K.S. Camara, James S. Heisner, Meiying Yang, David F. Stowe

Biomedical Engineering Faculty Research and Publications

Ranolazine is a clinically approved drug for treating cardiac ventricular dysrhythmias and angina. Its mechanism(s) of protection is not clearly understood but evidence points to blocking the late Na⁺ current that arises during ischemia, blocking mitochondrial complex I activity, or modulating mitochondrial metabolism. Here we tested the effect of ranolazine treatment before ischemia at the mitochondrial level in intact isolated hearts and in mitochondria isolated from hearts at different times of reperfusion. Left ventricular (LV) pressure (LVP), coronary flow (CF), and O₂ metabolism were measured in guinea pig isolated hearts perfused with Krebs-Ringer’s solution; mitochondrial (m) O_{2 …}

Bilateral Assessment Of Functional Tasks For Robot-Assisted Therapy Applications, Michelle J. Johnson, Sarah Wang, Ping Bai, Elaine Strachota, Guennady Tchekanov, Jeff Melbye, John Mcguire

Biomedical Engineering Faculty Research and Publications

This article presents a novel evaluation system along with methods to evaluate bilateral coordination of arm function on activities of daily living tasks before and after robot-assisted therapy. An affordable bilateral assessment system (BiAS) consisting of two mini-passive measuring units modeled as three degree of freedom robots is described. The process for evaluating functional tasks using the BiAS is presented and we demonstrate its ability to measure wrist kinematic trajectories. Three metrics, phase difference, movement overlap, and task completion time, are used to evaluate the BiAS system on a bilateral symmetric (bi-drink) and a bilateral asymmetric (bi-pour) functional task. Wrist …

Region-Of-Interest Material Decomposition From Truncated Energy-Resolved Ct, Taly Gilat Schmidt

Biomedical Engineering Faculty Research and Publications

Purpose: Energy-resolved CT using photon-counting detectors has the potential to provide improved material decomposition compared to dual-kVp approaches. However, available photon-counting detectors are susceptible to pulse-pileup artifacts, especially at the periphery of the field of view (FOV) where the object attenuation is low compared to the center of the FOV. Pulse pileup may be avoided by imaging a region-of-interest (ROI) where the dynamic range is expected to be limited. This work investigated performing material decomposition and reconstructing ROI basis images from truncated energy-resolved data.

Methods: A method is proposed to reconstructimages of basis functions primarily contained within the ROI, such …

Comparison Of Four Chip-Seq Analytical Algorithms Using Rice Endosperm H3k27 Trimethylation Profiling Data., Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng

BCoE Publications

Chromatin immunoprecipitation coupled with high throughput DNA Sequencing (ChIP-Seq) has emerged as a powerful tool for genome wide profiling of the binding sites of proteins associated with DNA such as histones and transcription factors. However, no peak calling program has gained consensus acceptance by the scientific community as the preferred tool for ChIP-Seq data analysis. Analyzing the large data sets generated by ChIP-Seq studies remains highly challenging for most molecular biology laboratories.Here we profile H3K27me3 enrichment sites in rice young endosperm using the ChIP-Seq approach and analyze the data using four peak calling algorithms (FindPeaks, PeakSeq, USeq, and MACS). Comparison …

Reducing Selection Bias In Case-Control Studies From Rare Disease Registries, J. Alexander Cole, John S. Taylor, Thomas N. Hangartner, Neal J. Weinreb, Pramod K. Mistry, Aneal Khan

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Background: In clinical research of rare diseases, where small patient numbers and disease heterogeneity limit study design options, registries are a valuable resource for demographic and outcome information. However, in contrast to prospective, randomized clinical trials, the observational design of registries is prone to introduce selection bias and negatively impact the validity of data analyses. The objective of the study was to demonstrate the utility of case-control matching and the risk-set method in order to control bias in data from a rare disease registry. Data from the International Collaborative Gaucher Group (ICGG) Gaucher Registry were used as an example.

Methods: …

Soft Tissue Cutting With Ultrasonic Mechanical Waveguides, Mark Wylie, Garrett Mcguinness, Graham Gavin

Conference Papers

The use of ultrasonic vibrations transmitted via small diameter wire waveguides represents a technology that has potential for minimally invasive procedures in surgery. This form of energy delivery results in distal tip mechanical vibrations with amplitudes of vibration of up to 50 μm and at frequencies between 20-50 kHz commonly reported. This energy can then be used by micro-cutting surgical tools and end effectors for a range of applications such as bone cutting, cement removal in joint revision surgery and soft tissue cutting. One particular application which has gained regulatory approval in recent years is in the area of cardiovascular …

Impact Isolation Of Training Shoes, Nicci Daly, Stephen Tiernan

Conference Papers

ABSTRACT The increase in popularity of physical activities from fun runs to competitive marathons has lead to a huge industry in sports footwear, which is now worth $20bn annually. There is a resultant increase in injuries, largely due to the repeated and prolonged nature of the impact forces experienced by the leg. Clinical data indicates that the knee is the most common site of running related injury, followed by the lower leg and foot. The complexity of the ankle structure means that injuries are acute and the success rates of replacements are very low. Therefore research in this area is …

Robust Cns Regeneration After Complete Spinal Cord Transection Using Aligned Poly-L-Lactic Acid Microfibers, Andres Hurtado, Jared M. Cregg, Han B. Wang, Dane F. Wendell, Martin Oudega, Ryan J. Gilbert, John W. Mcdonald

Chemical and Biochemical Engineering Faculty Research & Creative Works

Following spinal cord injury, axons fail to regenerate without exogenous intervention. In this study we report that aligned microfiber-based grafts foster robust regeneration of vascularized CNS tissue. Film, random, and aligned microfiber-based conduits were grafted into a 3 mm thoracic rat spinal cord gap created by complete transection. Over the course of 4 weeks, microtopography presented by aligned or random poly- l-lactic acid microfibers facilitated infiltration of host tissue, and the initial 3 mm gap was closed by endogenous cell populations. This bulk tissue response was composed of regenerating axons accompanied by morphologically aligned astrocytes. Aligned fibers promoted long distance …

Computational Simulations Demonstrate Altered Wall Shear Stress In Aortic Coarctation Patients Previously Treated By Resection With End-To-End Anastomosis, John F. Ladisa, Ronak Jashwant Dholakia, Alberto Figueroa, Irene E. Vignon-Clementel, Frandics P. Chan, Margaret M. Samyn, Joseph Richard Cava, Charles A. Taylor, Jeffrey A. Feinstein

Biomedical Engineering Faculty Research and Publications

Background.  Atherosclerotic plaque in the descending thoracic aorta (dAo) is related to altered wall shear stress (WSS) for normal patients. Resection with end-to-end anastomosis (RWEA) is the gold standard for coarctation of the aorta (CoA) repair, but may lead to altered WSS indices that contribute to morbidity.

Methods.  Computational fluid dynamics (CFD) models were created from imaging and blood pressure data for control subjects and age- and gender-matched CoA patients treated by RWEA (four males, two females, 15 ± 8 years). CFD analysis incorporated downstream vascular resistance and compliance to generate blood flow velocity, time-averaged WSS (TAWSS), and oscillatory shear …

Spatial And Temporal Variation Of Rod Photoreceptor Reflectance In The Human Retina, Robert F. Cooper, Adam M. Dubis, Ashavini M. Pavaskar, Jungtae Rha, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Using adaptive optics imaging tools to image the living retina, numerous investigators have reported temporal fluctuation in the reflectivity of individual cone photoreceptors. In addition, there is cone-to-cone (spatial) variation in reflectivity. As it has only recently become possible to image the complete rod photoreceptor mosaic in the living human retina, we sought to characterize the reflectivity of individual rods and compare their behavior to that of foveal/parafoveal cones. Across two subjects, we were able to successfully track the reflectance behavior of 1,690 rods and 1,980 cones over 12 hours. Rod and cone photoreceptors showed similar regional and temporal variability …

Improved Manufacturing Methods Of Bovine Femur Samples For Ultrasonic Testing And Assessment Of Materials Through Contract Angle Measurement, Kevin Mathew Lopez Galang

Biomedical Engineering

At California Polytechnic State University of San Luis Obispo (Cal Poly), the Biomedical Engineering department (BMED) requires its students to take the course listed as “BMED 420: Principles of Biomaterial Designs.” BMED 420 has a required laboratory section every week throughout the duration of the course that is meant to be a supplemental tool for learning. During the lab sections, students perform experiments and exercises that are currently being implemented in the industry. Despite accuracy of the methods and experiments relative to their use in the industry, there is always room for improvement. The objective of this project will illustrate …

Impaired Resistance Artery Reactivity Following Arteriogenesis, Michael (Mike) Machado

Biomedical Engineering

No abstract provided.

Computational Simulations For Aortic Coarctation: Representative Results From A Sampling Of Patients, John F. Ladisa, Alberto Figueroa, Irene E. Vignon-Clementel, Hyun Jin Kim, Nan Xiao, Laura M. Ellwein, Frandics P. Chan, Jeffrey A. Feinstein, Charles A. Taylor

Biomedical Engineering Faculty Research and Publications

Treatments for coarctation of the aorta (CoA) can alleviate blood pressure (BP) gradients(D), but long-term morbidity still exists that can be explained by altered indices of hemodynamics and biomechanics. We introduce a technique to increase our understanding of these indices for CoA under resting and nonresting conditions, quantify their contribution to morbidity, and evaluate treatment options. Patient-specific computational fluid dynamics (CFD) models were created from imaging and BP data for one normal and four CoA patients (moderate native CoA: D12 mmHg, severe native CoA: D25 mmHg and postoperative end-to-end and end-to-side patients: D0 mmHg). Simulations incorporated vessel deformation, downstream vascular …

Protective Effects Of Milk Phospholipids Against Uv Photodamage In Human Skin Equivalents, Zyra Achay

Master's Theses

The ultraviolet (UV) spectrum has been known to cause damage to skin in varying degrees. UVB radiation (290-320 nm) in particular, has been proven to be highly mutagenic and carcinogenic in many animal experiments compared to either UVA or UVC. The alarming rate of increase in skin cancer incidence has prompted many investigators to pursue other alternatives to sunscreens including changes in lifestyle habits and dietary consumption in order to boost our efforts in tackling this widespread disease. Previous studies employing confocal reflectance, MTT assay and histology suggest that milk phospholipids may possess protective properties against UVB-mediated damage but the …