Biomedical Engineering and Bioengineering Commons^™

Image-Based Quantification Of 3d Morphology For Bifurcations In The Left Coronary Artery: Application To Stent Design, Laura M. Ellwein, David S. Marks, Raymond Q. Migrino, Dennis Foley, Sara Sherman, John F. Ladisa Jr.

Biomedical Engineering Faculty Research and Publications

Background

Improved strategies for stent‐based treatment of coronary artery disease at bifurcations require a greater understanding of artery morphology.

Objective

We developed a workflow to quantify morphology in the left main coronary (LMCA), left anterior descending (LAD), and left circumflex (LCX) artery bifurcations.

Methods

Computational models of each bifurcation were created for 55 patients using computed tomography images in 3D segmentation software. Metrics including cross‐sectional area, length, eccentricity, taper, curvature, planarity, branching law parameters, and bifurcation angles were assessed using open‐sources software and custom applications. Geometric characterization was performed by comparison of means, correlation, and linear discriminant analysis (LDA).

Results …

Prosthetic Leg Kit For Deployment In Developing Countries, Brian Murphy, Dominique Porcincula, Derek Morgan, Kendall Ruggles, Christian Aguayo

Biomedical Engineering

The World Health Organization estimates that over 30 million people require some sort of prosthetic technology. However, traditional prosthetic fitting practices take a lot of time and cost a lot of money, making them inaccessible to millions of people around the world. StandUP Worldwide is an interdisciplinary project team devoted to creating low-cost prosthetic technologies for use around the world, especially in resource poor areas. They are currently developing a low cost, below-the-knee prosthetic kit that can be easily deployed in a resource-poor area. The following presents their solution for a below-the-knee prosthetic socket, foot, and leg.

Mg2+ Differentially Regulates Two Modes Of Mitochondrial Ca2+ Uptake In Isolated Cardiac Mitochondria: Implications For Mitochondrial Ca2+ Sequestration, Christoph A. Blomeyer, Jason Bazil, David F. Stowe, Ranjan K. Dash, Amadou Ks Camara

Biomedical Engineering Faculty Research and Publications

The manner in which mitochondria take up and store Ca²⁺ remains highly debated. Recent experimental and computational evidence has suggested the presence of at least two modes of Ca²⁺ uptake and a complex Ca²⁺ sequestration mechanism in mitochondria. But how Mg²⁺ regulates these different modes of Ca²⁺ uptake as well as mitochondrial Ca²⁺ sequestration is not known. In this study, we investigated two different ways by which mitochondria take up and sequester Ca²⁺ by using two different protocols. Isolated guinea pig cardiac mitochondria were exposed to varying concentrations of CaCl₂ in the …

Empirical Validation Of An In Silico Model Predicting The Fluid Dynamics Of An Iliac Artery Aneurysm, Rachel E. Willis

Master's Theses

Iliac artery aneurysms are considered rare and difficult to detect and treat. Prompt diagnosis and timely intervention are essential, because the incidence of rupture is as high as 50%. The reported mortality rate for patients who undergo surgery for ruptured iliac artery aneurysm ranges from 50% to 70%. This study developed an in-vitro mechanical model of an iliac artery aneurysm to verify the accuracy of computer simulation software. Both the in vitro model and the in silico model can be used for further research to develop better treatment technology. This study also looks at the different types of iliac artery …

The Effects Of Obesity On Resultant Knee Joint Loads For Gait And Cycling, Juan Gutierrez-Franco

Master's Theses

Osteoarthritis (OA) is a degenerative disease of cartilage and bone tissue and the most common form of arthritis, accounting for US$ 10.5 billion in hospital charges in 2006. Obesity (OB) has been linked to increased risk of developing knee OA due to increased knee joint loads and varus-valgus misalignment. Walking is recommended as a weight-loss activity but it may increase risk of knee OA as OB gait increases knee loads. Cycling has been proposed as an alternative weight-loss measure, however, lack of studies comparing normal weight (NW) and OB subjects in cycling and gait hinder identification of exercises that may …

Characterizing Neurotransmitter Receptor Activation With A Perturbation Based Decomposition Method, Stephen Gregory Jue

Master's Theses

The characterization of postsynaptic potentials, in terms of neurotransmitter receptor activation, is of clinical significance because information associated with receptor activation can be used in the diagnosis and study of neurological disorders. Single-unit recordings provide a method of measuring postsynaptic potentials in neurons using a microelectrode system, but yield no detailed information regarding the neurotransmitter receptors that contribute to the potential. To determine the types of neurotransmitter receptors that result in a compound postsynaptic potential from a microelectrode reading, decomposition of the potential is necessary. In this work, a perturbation-based decomposition method developed by R. Szlavik is evaluated for this …

A Novel Approach To User Controlled Ambulation Of Lower Extremity Exoskeletons Using Admittance Control Paradigm, Kiran Kartika Karunakaran

Dissertations

The robotic lower extremity exoskeletons address the ambulatory problems confronting individuals with paraplegia. Paraplegia due to spinal cord injury (SCI) can cause motor deficit to the lower extremities leading to inability to walk. Though wheelchairs provide mobility to the user, they do not provide support to all activities of everyday living to individuals with paraplegia.

Current research is addressing the issue of ambulation through the use of wearable exoskeletons that are pre-programmed. There are currently four exoskeletons in the U.S. market: Ekso, Rewalk, REX and Indego. All of the currently available exoskeletons have 2 active Degrees of Freedom (DOF) except …

Raman Spectroscopic Analysis Of Fingernail Clippings Can Help Differentiate Between Postmenopausal Women Who Have And Have Not Suffered A Fracture, James R. Beattie, Niamh M. Cummins, Clare Caraher, Olive M. O'Driscoll, Aruna T. Bansal, Richard Eastell, Stuart H. Ralston, Michael D. Stone, Gill Pearson, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Raman spectroscopy was applied to nail clippings from 633 postmenopausal British and Irish women, from six clinical sites, of whom 42% had experienced a fragility fracture. The objective was to build a prediction algorithm for fracture using data from four sites (known as the calibration set) and test its performance using data from the other two sites (known as the validation set). Results from the validation set showed that a novel algorithm, combining spectroscopy data with clinical data, provided area under the curve (AUC) of 74% compared to an AUC of 60% from a reduced QFracture score (a clinically accepted …

Effect Of Melt Method On Thoracolumbar Connective Tissue, Faria Sanjana

Theses

Approximately, 31 million adults in the United States suffer from low back pain (LBP). Altered connective tissue structure has been identified in adults with chronic LBP. Numerous novel treatments are being developed targeting the connective tissue and nervous system to relieve people from LBP. One such self-care treatment is the MELT method. The objective of this study was to determine whether thickness of thoracolumbar connective tissue and other biomechanical and viscoelastic properties of myofascial tissue in the low back region change in subjects with chronic LBP as a result of MELT.

Using ultrasound imaging and an algorithm developed in MATLAB, …

Continuum Mechanical Analysis Of Space And Time Dependent Deformation Pattern Of Brain With Blunt Injury, Chen Miao

Theses

Deformation of human brain due to acceleration impact has been widely accepted as the direct connection to the Trauma Brain Injury (TBI). However, the limitation of obtaining deformation data of TBI is a major obstacle to understanding TBI mechanism. This experiment mainly focuses on developing a method to measure deformation pattern of brain with blunt injury. First of all, displacement data of markers on sagittal plane of an injury head model was collected using 3D reconstruction software after an impact test. Second, the displacement data was used to calculate 2D Lagrangian strain tensor and the principal strain. The temporal and …

An Electromechanical System For Characterization Of Piezoelectric Materials, Ahmet Sait Asan

Theses

Piezoelectric materials have been used in medical applications for a long time due to their unique characteristics, which is to respond to mechanical stimulation by producing an electrical current and vice versa. They perform a pivotal role in medical applications both for diagnostic and therapeutic purposes. In this regard, characterizing the piezoelectric properties of these materials is crucial for their usage. In this particular study, an electromechanical system for measurement of piezoelectric output signals is designed and tested. The project is motivated by the question: can the piezoelectric properties be characterized by applying different mechanical stimulation waveforms and frequencies. Two …

Antibacterial Efficacy Of Nanometals In Conjunction With Electrical Stimulus, Syed A. Hussain

Theses

Hospital related infections generally result from the combined effect of preexisting bacteria on the patient and invasive devices. This demonstrates the significance in improving these medical devices to increase the quality of life of the patients that require them. This study will attempt to evaluate the antibacterial efficacy of nanocopper particles and an electrical stimulus for the usage in medical device development and the hospital environment.

For devices such as catheters, infections typically result from bacteria entering the body from the outside. This is accomplished by bacteria attaching themselves to the exterior of the device and producing biofilm which allows …

Response Of Stretch-Injured Schwann Cells, Stephanie Iring

Theses

Axon fibers are covered by myelin sheath. After axonal damage, demyelination follows with the production of debris. In the Central Nervous System many studies have been performed to observe and analyze stretch injured axons, but very little has been done to study the white matter axonal tracts, oligodendrocytes. Schwann cells can help take a first look into stretch injured glia cells from the Peripheral nervous system. In order to observe changes in Schwann Cells a stretch injury device is used to produce the effects of severe and moderate injuries. Schwann Cells are stretch injured in both their undifferentiated and differentiated …

Nano-Photonic Waveguides For Chemical And Biomedical Sensing, Surya Venkatasekhar Cheemalapati

USF Tampa Graduate Theses and Dissertations

In this dissertation, advances in the fields of Photonics, and Plasmonics, and specifically, single cell analysis and waveguide sensing will be addressed. The first part of the dissertation is on Finite Difference Time Domain (FDTD) optimization and experimental demonstration of a nano-scale instrument that allows sensing at the cellular and subcellular levels. A new design of plasmonic coupler into a nanoscale waveguide is proposed and optimized using FDTD simulations. Following this, a subcellular nanoendoscope that can locally excite fluorescence in labelled cell organelles and collect the emitted fluorescent light for detailed spectrum analysis is fabricated and tested. The nanoendoscope has …

Graphene Quantum Dots-Based Drug Delivery For Ovarian Cancer Therapy, Yiru Qin

USF Tampa Graduate Theses and Dissertations

Ovarian cancer, one of the most dreadful malignancies of the female reproductive system, poses a lethal threat to women worldwide. In this dissertation, the objective was to introduce a novel type of graphene quantum dots (GQDs) based nano-sized drug delivery systems (DDS) for ovarian cancer treatment. As a starting point, the facile synthesis method of the GQDs was established. Subsequently, the targeting ligand,folic acid (FA), was conjugated to GQDs. Next, a FDA approved chemotherapeutic drug, Doxorubicin (DOX), was loaded to form the GQDs-FA-DOX nano-conjugation as the DDS. Moreover, the uptake profile and anti-cancer effect of the GQDs-FA-DOX were validated in …

Impaired Corpus Cavernosum Relaxation Is Accompanied By Increased Oxidative Stress And Up-Regulation Of The Rho-Kinase Pathway In Diabetic (Db/Db) Mice, Fernanda Bruschi Marinho Priviero, Haroldo A.F. Toque, Kênia Pedrosa Nunes, Denise Gonçalves Priolli, Cleber Evandro Teixeira, Robert Clinton Webb

Biomedical Engineering and Sciences Faculty Publications

Basal release of nitric oxide from endothelial cells modulates contractile activity in the corpus cavernosum via inhibition of the RhoA/Rho-kinase signaling pathway. We aimed to investigate nitric oxide bioavailability, oxidative stress and the Rho-kinase pathway in the relaxation of the corpus cavernosum of an obese and diabetic model of mice (db/db mice). We hypothesized that in db/db mice impaired relaxation induced by Rho-kinase inhibitor is accompanied by diminished NO bioavailability, increased oxidative stress and upregulation of the RhoA/Rho-kinase signalling pathway. Cavernosal strips from male lean and non-diabetic db/+ and db/db mice were mounted in myographs and isometric force in response …

Kcnq Channel Openers Reverse Depressive Symptoms Via An Active Resilience Mechanism, Allyson K. Friedman, Barbara Juarez, Stacy M. Ku, Hongxing Zhang, Rhodora C. Calizo, Jessica J. Walsh, Depish Chaudhury, Song Zhang, Angel Hawkins, David M. Dietz, James W. Murrogh, Maria Ribadeneira, Erik H. Wong, Rachael L. Neve, Ming-Hu Han

Publications and Research

Less than half of patients suffering from major depressive disorder, a leading cause of disability worldwide, achieve remission with current antidepressants, making it imperative to develop more effective treatment. A new therapeutic direction is emerging from the increased understanding of natural resilience as an active stress-coping process. It is known that potassium (Kþ) channels in the ventral tegmental area (VTA) are an active mediator of resilience. However, no druggable targets have been identified to potentiate active resilience mechanisms. In the chronic social defeat stress model of depression, we report that KCNQ-type Kþ channel openers, including FDA-approved drug retigabine (ezogabine), show …

Using Mathematical Modeling To Unmask The Concealed Nature Of Long Qt-3 Syndrome, Steven Poelzing, Amara Greer-Short, Seth H. Weinberg

Biology and Medicine Through Mathematics Conference

No abstract provided.

Pressure Relationships Of Inspired Air Into The Human Lung Bifurcations, Parya Aghasafari, Israr Ibrahim, Ramana Pidaparti

Biology and Medicine Through Mathematics Conference

No abstract provided.

Hiv Vaccines: Progress, Limitations And A Crispr/Cas9 Vaccine, Omar A. Garcia Martinez

Biology: Student Scholarship & Creative Works

ABSTRACT: The HIV-1 pandemic continues to thrive due to ineffective HIV-1 vaccines. Historically, the world’s most infectious diseases, such as polio and smallpox, have been eradicated or have come close to eradication due to the advent of effective vaccines. Highly active antiretroviral therapy is able to delay the onset of AIDS but can neither rid the body of HIV-1 proviral DNA nor prevent further transmission. A prophylactic vaccine that prevents the various mechanisms HIV-1 has to evade and attack our immune system is needed to end the HIV-1 pandemic. Recent advances in engineered nuclease systems, like the CRISPR/Cas9 system, have …