Biomedical Engineering and Bioengineering Commons^™

Chlorine Demand Shows Thresholds And Hierarchy With Source Water Quality At Beaver Lake, Arkansas, Jaime M. Gile

Graduate Theses and Dissertations

This study investigated the effects of source water quality in Beaver Lake on the amount of chlorine (Cl) needed to develop decision support system to help guide chlorination practices in pre-treatment of source water. Chlorine demand assays were performed on water samples from Beaver Lake collected from the intake structure at Beaver Water District from March 2014 through August 2015, and using data from these assays, the two points of interest in this study were the Cl dose at which Cl residuals began to accumulate and the mean Cl demand occurring after that dose. Three methods of analysis were used …

Investigation Of Copling Strength And Directionality Between Eeg And Fnirs At Resting State Using Permutation Conditional Mutual Information, Gowtham Krishnan Murugesan

Bioengineering Theses - Archive

The motivation of study is to combine multimodality approach EEG-fNIRS to study relationship between neural activity and hemodynamic response applying information theory concepts. Investigating human brain function can be improved by employing a multimodal neuroimaging approach. Since each neuroimaging modality has its own characteristic features especially in terms of spatial and temporal resolution integrating fNIRS responses with EEG could accurately characterize the neurovascular coupling in cortical regions selected as part of the brain network involved in motor and cognitive behavior. Simultaneous recording of fNIRS-EEG is therefore an important resource for studying aspects of neurovascular coupling and its relationship with pathological …

Investigating Causal Interactions In The Human Brain Using Eeg And Fnirs, Borzou Alipourfard

Bioengineering Theses - Archive

It is necessary for distributed neural assemblies to work in collaboration to achieve the most elementary brain functions. Activities within segregated neural assemblies are integrated to process an incredibly diverse collection of cognitive tasks. Measures such as correlation, cross-correlation, coherence and phase delay make limited use of the information that is available with the advanced multichannel and multimodal recordings of the brain’s activity. They can also give spurious and false results. Most importantly, these bivariate measures are not capable of describing the interaction among multiple neural assemblies and the effective connectivity among them. Through causality analysis, we can identify these …

Three-Dimensional Adult Cardiac Extracellular Matrix Promotes Maturation Of Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes, Ahsley H. Fong, Mónica Romero-López, Christopher M. Heylman, Mark Keating, David Tran, Agua Sobrino, Anh Q. Tran, Hiep H. Pham, Cristhian Fimbres, Paul D. Gershon, Elliot L. Botvinick, Steven C. George, Christopher C.W. Hughes

Biomedical Engineering

Pluripotent stem cell-derived cardiomyocytes (CMs) have great potential in the development of new therapies for cardiovascular disease. In particular, human induced pluripotent stem cells (iPSCs) may prove especially advantageous due to their pluripotency, their self-renewal potential, and their ability to create patient-specific cell lines. Unfortunately, pluripotent stem cell-derived CMs are immature, with characteristics more closely resembling fetal CMs than adult CMs, and this immaturity has limited their use in drug screening and cell-based therapies. Extracellular matrix (ECM) influences cellular behavior and maturation, as does the geometry of the environment—twodimensional (2D) versus three-dimensional (3D). We therefore tested the hypothesis that native …

Gamma-Radiation Exposure Alters The Cardiovascular Extracellular Matrix., Nicholas Allen

Electronic Theses and Dissertations

Ionizing radiation has been associated with various cardiovascular complications; however, the associated molecular changes from radiation exposure still remain largely uncharacterized. Alterations to the cardiovascular tissue microenvironment, i.e. the extracellular matrix (ECM), directly affect the function of integrated vascular cells, including cell adhesion, potential to form vessels, and endothelial permeability, which can promote cardiovascular pathologies. The ECM is constantly remodeled in response to stimuli, such as TGF-β1, which leads to excessive ECM accumulation. We hypothesize that radiation exposure will alter the cardiovascular ECM. Human Cardiac Fibroblasts (HCFs) were utilized to produce ECM as an in vitro model to study changes …

A Transcutaneous Data And Power Transfer System For Osteogenesis Monitoring Sensors, Deepak Dileepkumar

Masters Theses

Implant devices are widely used in health care applications such as life support systems, patient rehabilitation devices and patient monitoring devices. Medical implants have enabled physicians to obtain relevant real time information regarding an organ, or a site of interest with in the body and suggest treatment accordingly. In some cases, the position of the implant within the body or threats of infections prevents wired communication techniques to extract information from the implant. Wireless communication is the alternative in such cases. Distraction osteogenesis is one such application where wireless communication can be established with callus growth monitoring sensors to obtain …

Augmenting Sensorimotor Control Using “Goal-Aware” Vibrotactile Stimulation During Reaching And Manipulation Behaviors, Emmanouil Tzorakoleftherakis, Todd D. Murphey, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

We describe two sets of experiments that examine the ability of vibrotactile encoding of simple position error and combined object states (calculated from an optimal controller) to enhance performance of reaching and manipulation tasks in healthy human adults. The goal of the first experiment (tracking) was to follow a moving target with a cursor on a computer screen. Visual and/or vibrotactile cues were provided in this experiment, and vibrotactile feedback was redundant with visual feedback in that it did not encode any information above and beyond what was already available via vision. After only 10 minutes of practice using vibrotactile …

Development And Initial Validation Of A Surgical Instrument For In Situ Mechanical Characterization Of Surgical Mesh-Tissue Composites, Jorge Ivan Hernandez Sanchez

All Theses

Approximately 5 million Americans have an abdominal wall hernia, and over 700,000 undergo surgical procedures every year to treat them. Surgical procedures have evolved with the goal of preventing recurrences, leading to the current gold standard of treatment: hernia repair with mesh. Hernia repair with mesh consists on augmenting the weakened abdominal wall by implanting a synthetic or biological mesh. Although the adoption of hernia repair with mesh has improved outcomes, recurrence from primary repair procedures with large incisions (>10 cm) remains an alarming 32%.

The wide variety of implanted surgical mesh (materials, structure) and surgical variability (attachment method, …

Autologous Protein Solution Exhibits Potential To Mitigate Osteoarthritis (Oa) Progression In A Human Explant Co-Culture Model, Kathleen Emily Steckbeck

All Theses

Osteoarthritis (OA) is a debilitating and painful disease that affects upwards of one in every eight adults1,2. OA influences the entire joint, but is traditionally characterized by cartilage degradation3. OA is a multifactorial disease with genetic, biological, and biochemical consideration, but there has been a recent shift in scientific opinion that the pathological progression of OA stems from an inflammatory milieu produced by the feed-forward progressive pathway as evidenced by simultaneous cartilage and synovium co-culture4–7. Autologous protein solution (APS) poses as an intriguing potential OA therapy by possessing a high anti-inflammatory and anabolic mediator concentration profile that could potentially mitigate …

Functional Vasodilation And Vascular Reactivity In Arteriolar Collaterals In The Spinotrapezius Of Males And Females, Britta C. Nelson

Biomedical Engineering

Peripheral arterial occlusive disease (PAOD) occurs when there is narrowing or blockage of the peripheral arteries that carry blood to the extremities, most commonly the legs. The most common symptom of PAOD is intermittent claudication, or ischemic pain during exercise. Women with PAOD experience a greater extremity functional impairment than men. Since impaired vasodilation might cause the ischemic pain from PAOD, we should evaluate vasodilation post ligation in males and females in collateral vessels, which connect two arterial segments to maintain blood flow to an otherwise hypoxic area. First, we need to examine collateral vasodilation in unoperated male and female …

Fluid Flow Characterization And In Silico Validation In A Rapid Prototyped Aortic Arch Model, Alexandra Mariel Knauer

Master's Theses

Transcatheter aortic heart valve replacement (TAVR) is a procedure to replace a failing aortic valve and is becoming the new standard of care for patients that are not candidates for open-heart surgery [2]. However, this minimally invasive technique has shown to cause ischemic brain lesions, or “silent infarcts”, in 90% of TAVR patients, which can increase the patient’s risk for stroke by two to four times in future years [3]. Claret Medical Inc., a medical device company, has developed a cerebral protection system that filters and captures embolic debris released during endovascular procedures, such as TAVR. This thesis utilized CT …

Numerical Modeling Of Virus Transport Through Unsaturated Porous Media, Kandala Rajsekhar, Pramod Kumar Sharma, Sanjay K. Shukla

Research outputs 2014 to 2021

This paper describes the movement of virus in one-dimensional unsaturated porous media. The governing virus transport equations consider the inactivation in liquid phase, liquid–solid interface, air–liquid interface, and sorption in both liquid–solid and air–liquid interfaces. Finite-volume method has been used for solving the advection and dispersion processes of the virus transport equation. The effects of transport parameters on virus concentration profiles have been investigated for virus present in liquid phase, adsorbed liquid–solid and liquid–air phases. The results show that the movement of viruses in three phases is affected by soil moisture, inactivation rate, pore velocity, and mass transfer coefficients. It …

Alginate Hydrogels As Three-Dimensional Scaffolds For In Vitro Culture Models Of Growth Plate Cartilage Development And Porcine Embryo Elongation, Taylor D. Laughlin

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The establishment of in vitro culture models utilizes tissue engineering principles to design functional mimics of in vivo environments in vitro. Advantages for the use of in vitro culture models include ethical alleviation of animal models for therapeutic testing, cost efficiency, and a greater ability to study specific mechanisms via a systematic, ground-up approach to development. In this thesis, alginate hydrogels are utilized in the development of in vitro culture models of porcine embryo elongation and growth plate cartilage development. First, the effect of scaffold and modifications to the scaffold were explored in both projects. In order to modulate …

Prefrontal Responses To Stroop Tasks In Subjects With Post-Traumatic Stress Disorder Assessed By Functional Near Infrared Spectroscopy, Amarnath Yennu, Fenghua Tian, Alexa Smith-Osborne, Robert J. Gatchel, Fu Lye Woon, Hanli Liu

Bioengineering Faculty Publications - Archive

No abstract provided.

Blinking Phase-Change Nanocapsules Enable Background-Free Ultrasound Imaging, Alexander S. Hannah, Geoffrey P. Luke, Stanislav Y. Emelianov

Dartmouth Scholarship

Microbubbles are widely used as contrast agents to improve the diagnostic capability of conventional, highly speckled, low-contrast ultrasound imaging. However, while microbubbles can be used for molecular imaging, these agents are limited to the vascular space due to their large size (> 1 μm). Smaller microbubbles are desired but their ultrasound visualization is limited due to lower echogenicity or higher resonant frequencies. Here we present nanometer scale, phase changing, blinking nanocapsules (BLInCs), which can be repeatedly optically triggered to provide transient contrast and enable background-free ultrasound imaging. In response to irradiation by near-infrared laser pulses, the BLInCs undergo cycles of …

Student Spotlight | Biological Engineering, Usu College Of Engineering

College of Engineering News

July 2016 - Q&A with Biological Engineering student Harsh Singh

Methods For Culturing Retinal Pigment Epithelial Cells: A Review Of Current Protocols And Future Recommendations, Aaron H. Fronk, Elizabeth Vargis

Biological Engineering Faculty Publications

The retinal pigment epithelium is an important part of the vertebrate eye, particularly in studying the causes and possible treatment of age-related macular degeneration. The retinal pigment epithelium is difficult to access in vivo due to its location at the back of the eye, making experimentation with age-related macular degeneration treatments problematic. An alternative to in vivo experimentation is cultivating the retinal pigment epithelium in vitro, a practice that has been going on since the 1970s, providing a wide range of retinal pigment epithelial culture protocols, each producing cells and tissue of varying degrees of similarity to natural retinal pigment …

Cuny Summer Stem Institute: Experimental Research In Engineering For High School Students, Maribel Vazquez

Open Educational Resources

Summer HS students were engaged in hands-on experimental research in engineering laboratories in mentorship with CCNY Engineering Undergraduate Researchers. This course was part of the Summer STEM Institute directed by Dr. Joe Barba and Mr. Otto Marte.

Mechanotransduction Of Matrix Stiffness Regulates Cell Adhesion Strength: An Analysis Using Biomaterial Surfaces With Tunable Mechanical And Chemical Properties, Asma Sharfeddin Sharfeddin

USF Tampa Graduate Theses and Dissertations

Cells have the ability to sense the rigidity of the extracellular matrix which directly affects the control of cellular functions in development, wound healing and malignant transformation. Polydimethylsiloxane elastomers are useful model biomaterials for mechanotransduction studies because they possess several advantages including ease of fabrication, tunable elasticity and modifiable surface chemistry. In this work, we are investigating the influence of matrix stiffness on adhesion strength and the mechanosensory structures that regulate these processes. In addition, the effect of surface modifications to this elastic substrate system on other physical properties such as local stiffness and topography will be analyzed. Based on …

Toward Translating Near-Infrared Spectroscopy Oxygen Saturation Data For The Non-Invasive Prediction Of Spatial And Temporal Hemodynamics During Exercise, Laura M. Ellwein, Margaret M. Samyn, Michael E. Danduran, Sheila M. Schindler-Ivens, Stacy Liebham, John F. Ladisa Jr.

Exercise Science Faculty Research and Publications

Image-based computational fluid dynamics (CFD) studies conducted at rest have shown that atherosclerotic plaque in the thoracic aorta (TA) correlates with adverse wall shear stress (WSS), but there is a paucity of such data under elevated flow conditions. We developed a pedaling exercise protocol to obtain phase contrast magnetic resonance imaging (PC-MRI) blood flow measurements in the TA and brachiocephalic arteries during three-tiered supine pedaling at 130, 150, and 170 % of resting heart rate (HR), and relate these measurements to non-invasive tissue oxygen saturation (StO₂) acquired by near-infrared spectroscopy (NIRS) while conducting the same protocol. Local quantification …