Biomedical Engineering and Bioengineering Commons^™

Monitoring Heart Rate Variability In Relation To Sleep Quality, Yi-Tzu Wang

Theses and Dissertations

The development and analysis of heart rate variability for sleep quality monitoring have been concerned for many years in human being. Sleep is a physiological process that is essentially maintaining the function of human body. Heart rate variability have undergone much-needed development to assess the effects such as sleep disorder, insomnia, high blood pressure, stress and even diabetes. Accurately evaluating physiological signals that are practical to measure the sleep quality in individuals monitoring heart rate variability is an important activation of diverse biological systems during sleep. A noteworthy role of measuring the heart rate variability is played by the autonomic …

Development Of Peritoneal Microbubble Oxygenation As An Extrapulmonary Treatment For Hypoxia, Nathan Legband

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Patients affected by a respiratory disease or injury experience a substantially impaired respiratory system and as a consequence are unable to obtain a sufficient amount of oxygen. Hypoxia can quickly result in developing permanent tissue damage or death. Currently, the medical methods of treating hypoxia are mechanical ventilation or extracorporeal membrane oxygenation. However, these treatments are ineffective in certain cases and possess significant additional risks including barotrauma, infection, hemorrhage, and thrombosis.

The extrapulmonary method of peritoneal oxygenation has been investigated by other research groups as a potential alternative to providing supplemental oxygen in hypoxic animals. In peritoneal oxygenation, the peritoneum, …

Design And Validation Of An In Vivo Long-Term Attachment Capsule Robot, Wanchuan Xie

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

The invention of capsule endoscopy (CE) made the non-invasive monitoring of the entire small bowel possible and became the primary means for diagnosing small bowel pathology. In the last decade, capsule robots have been transformed from diagnostic devices into a widely studied biomedical platform with the potential for active locomotion, drug delivery and therapeutic capabilities. To perform accurate on-site drug release and therapy, it is necessary for a capsule robot to be able to attach to the intestinal tissue and maintain its position long-term. Design challenges derive from the task of long-term mucosal adhesion which requires firm, quick-response attachment without …

Biplane Fluoroscopy For Hindfoot Motion Analysis During Gait: A Model-Based Evaluation, Janelle A. Cross, Ben Mchenry, Robert C. Molthen, Emily Exten, Taly Gilat-Schmidt, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

The purpose of this study was to quantify the accuracy and precision of a biplane fluoroscopy system for model-based tracking of in vivo hindfoot motion during over-ground gait. Gait was simulated by manually manipulating a cadaver foot specimen through a biplane fluoroscopy system attached to a walkway. Three 1.6-mm diameter steel beads were implanted into the specimen to provide marker-based tracking measurements for comparison to model-based tracking. A CT scan was acquired to define a gold standard of implanted bead positions and to create 3D models for model-based tracking. Static and dynamic trials manipulating the specimen through the capture volume …

Synthesis And Characterization Of 3-D Tissue Engineered Tumor Models For Melanoma Study And Extracellular Matrix Investigation, Joseph L. Spano

Theses and Dissertations

Introduction: Melanoma is the deadliest form of skin cancer, projected to claim over 9,700 American lives and necessitate $3.3 billion in care and treatment costs in 2017. In order to reduce the socioeconomic burdens and lessen cancer-related mortality and morbidity, advancements in early-stage diagnostics and treatments are essential. Two-dimensional (2-D) tissue culture treated plastics (TCTP) are reductionist in vitro models that are commonly used in drug development and preclinical drug evaluation. These models poorly recapture the native tumor microenvironment (TME), providing unrealistic growth conditions, and are thus poorly suited to measure the efficacy of newly emerging therapies. We have developed …

Effect Of Storage Temperature And Time On Lyophilized Water Bark Extract's Biological Activity, Jillian Schneider

Biological and Agricultural Engineering Undergraduate Honors Theses

Sweetgum bark extract has been known to show biological activities such as antimicrobial and antioxidant capabilities. The storage capacity of the extract, however, was unknown and previously thought to diminish over time. However, upon experimentation, the freeze-dried sweetgum bark extract showed no signs that storage time or storage temperature had any significant effect on the biological activities. There was no significant difference across storage temperature over time in the experiment (ANOVA RM, P0.05). Therefore, the antioxidant capabilities of the sweetgum extract were not affected by the storage time or temperature treatments studied in this work. For the antimicrobial experiment, there …

Pegda Pouches To Prevent Adhesions With In Vivo Bioreactor- Based Vascular Graft Strategies, Kranthi Vuppuluri

Theses and Dissertations

Different strategies have been investigated for the fabrication of vascular grafts. Using the peritoneal cavity of the patient as an “in vivo bioreactor” to recruit autologous cells to the implanted vascular conduit is one of the promising options. One of the main drawbacks with this strategy is the potential to form adhesions in the peritoneal cavity. In this project we are trying to address this potential side-effect by using polyethylene (glycol) diacrylate (PEGDA) to produce a hydrogel pouch into which the electrospun conduits are placed, with the goal of reducing the potential to form peritoneal adhesion after implantation. PEG is …

Production Of Phenol-Formaldehyde Adhesives From Catalytic Pyrolysis Oil, Angela M. Akude

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Phenol-formaldehyde adhesives conventionally synthesized from fossil fuel resources pose two major concerns: sustainability issues and environmental concerns. The sustainability issues arise from the inevitable depletion of fossil fuel resources while
the environmental concerns, primarily, stem from the emission of volatile organic compounds. Thus, opting for alternative raw materials from renewable resources reduces the dependence on fossil fuels as well as promote the production of environmentally-friendly products.

The successful commercialization of bio-adhesives requires that the substitution of phenol with bio-oil during resin synthesis should be above 40%. In this study, catalytic pyrolysis oil produced from pinyon-juniper biomass and red mud alumina …

Anaerobic Digestion Of Wastewater: Effects Of Inoculants And Nutrient Management On Biomethane Production And Treatment, Jason Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to population expiation and the increased awareness of the impact on the environment by wastewater treatment, improved wastewater treatment systems are needed to treat municipal and agricultural wastewater. Treating wastewater with oxygen decreases carbon compounds at the expense of energy to move carbon and oxygen to be in contact with each other. Anaerobic digestion of wastewater can reduce the cost by utilizing microbes to treat high amounts of carbon in wastewater without the need for extensive oxygen requirement. With a proper balance of nutrients, microbes also produce methane, a renewable energy source.

It has been suggested that microalgae be …

Algae-Based Biofilm Productivity And Treatment Of Dairy Wastewater: Effects Of Temperature And Organic Carbon Concentration, Zachary T. Fica

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Production of dairy and associated products is a source of millions of gallons of wastewater every year. Water used in cleaning feeding stalls as well as the liquid component of the animal waste are two of the major volumetric components of this wastewater. This water is nutrient rich, often limiting the viability as a land applied fertilizer. However, these same nutrients could be used as an inexpensive feedstock for the cultivation of algae, which can then be used to produce downstream products including animal feed and aquaculture.

As part of this study, algal biomass was cultivated on dairy wastewater from …

The Agile Approach In Pharmaceutical Software Development, Priyal Bhargava

Honors Scholar Theses

The Agile development model is increasingly being adopted by the pharmaceutical industry for software development. Currently, there are several software projects under development by pharmaceutical companies that are using the Agile process. Other methodologies such as the Waterfall process, a traditional approach to project management, have evolved over time and been compared against the Agile method. Also there are conflicts of interest which should be taken into consideration when in a pharmaceutical setting such as abiding by FDA regulations. In addition, Agile’s sub-divisional approaches add to the versatility of how this iterative approach is applied in the pharmaceutical industry. The …

Patient-Derived Hydrogel As A Sacrificial Matrix For Efficient Cell Loading, Shalmli U. Joshi

Honors Scholar Theses

The field of tissue engineering focuses on delivering patient-derived stem cells to the body through the use of degradable biomaterials, such as hydrogels, which are infused into engineered scaffolds. Hydrogels act as templates to support and guide cells towards the regeneration of new tissue. In this study, we introduce a completely intraoperative procedure for obtaining a fibrin hydrogel for tissue engineering applications. In the past, fibrin hydrogel has been commonly formed by combining fibrinogen protein with animal-derived thrombin. Instead, we have developed an automated, and therefore reproducible, protocol to isolate and form fibrin hydrogel without the use of animal-derived thrombin. …

Exploiting Self-Organization In Bioengineered Systems: A Computational Approach, Delin Davis, Anna Doloman, Gregory J. Podgorski, Elizabeth Vargis, Nicholas S. Flann

Biological Engineering Faculty Publications

The productivity of bioengineered cell factories is limited by inefficiencies in nutrient delivery and waste and product removal. Current solution approaches explore changes in the physical configurations of the bioreactors. This work investigates the possibilities of exploiting self-organizing vascular networks to support producer cells within the factory. A computational model simulates de novo vascular development of endothelial-like cells and the resultant network functioning to deliver nutrients and extract product and waste from the cell culture. Microbial factories with vascular networks are evaluated for their scalability, robustness, and productivity compared to the cell factories without a vascular network. Initial studies demonstrate …

Optimization Of Fluorescent Imaging In The Operating Room Through Pulsed Acquisition And Gating To Ambient Background Cycling, Kristian J. Sexton, Yan Zhao, Scott C. Davis, Shudong Jiang, Brian Pogue

Dartmouth Scholarship

The design of fluorescence imaging instruments for surgical guidance is rapidly evolving, and a key issue is to efficiently capture signals with high ambient room lighting. Here, we introduce a novel time-gated approach to fluorescence imaging synchronizing acquisition to the 120 Hz light of the room, with pulsed LED excitation and gated ICCD detection. It is shown that under bright ambient room light this technique allows for the detection of physiologically relevant nanomolar fluorophore concentrations, and in particular reduces the light fluctuations present from the room lights, making low concentration measurements more reliable. This is particularly relevant for the light …

Sophorolipid Butyl Ester Diacetate Does Not Affect Macrophage Polarization But Enhances Astrocytic Glial Fibrillary Acidic Protein Expression At Micromolar Concentrations In Vitro, Alexis M. Ziemba, Manoj K. Gottipati, Filbert Totsingan, Cheryl M. Hanes, Richard A. Gross, Michelle R. Lennartz, Ryan J. Gilbert

Chemical and Biochemical Engineering Faculty Research & Creative Works

Peritoneal macrophages (PMACs) and spinal cord astrocytes were exposed to varying concentrations of soluble sophorolipid butyl ester diacetate (SLBEDA) in vitro. Macrophages and astrocytes demonstrated no decrease in viability in response to SLBEDA. Studying pro- and anti-inflammatory genes, PMACs did not show a shift toward a pro-inflammatory phenotype. However, at higher concentrations (3 and 30 μM), astrocytes showed an increase in their expression of glial acidic fibrillary protein. This novel category of compounds poses low risk to PMAC and astrocyte viability; however, the effect on PMAC polarization and astrocyte reactivity requires more elucidation.

Brain Lesions Among Orally Fed And Gastrostomy-Fed Dysphagic Preterm Infants: Can Routine Qualitative Or Volumetric Quantitative Magnetic Resonance Imaging Predict Feeding Outcomes?, Nasser H. Kashou, Irfaan Akram Dar, Mohamed A. El-Mahdy, Charles Pluto, Mark Smith, Ish K. Gulati, Warren Lo, Sudarshan R. Jadcherla

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Introduction: The usefulness of qualitative or quantitative volumetric magnetic resonance imaging (MRI) in early detection of brain structural changes and prediction of adverse outcomes in neonatal illnesses warrants further investigation. Our aim was to correlate certain brain injuries and the brain volume of feeding-related cortical and subcortical regions with feeding method at discharge among preterm dysphagic infants.

Materials and methods: Using a retrospective observational study design, we examined MRI data among 43 (22 male; born at 31.5 ± 0.8 week gestation) infants who went home on oral feeding or gastrostomy feeding (G-tube). MRI scans were segmented, and volumes of brainstem, …

Shear Driven Micro-Fluidic Pump For Cardiovascular Applications, Nihad E. Daidzic

Aviation Department Publications

A valveless shear-driven micro-fluidic pump design (SDMFP) for hemodynamic applications is presented in this work. One of the possible medical and biomedical applications is in-vivo hemodynamic (human blood circulation) support/assist. One or more SDMFPs can be inserted/implanted into vascular lumens in a form of a stent/duct in series and/or in parallel (bypass duct) to support blood circulation in-vivo. A comprehensive review of various micro-pump designs up to about mid 2000’s is given in [1,2]. Many of micropump designs considered are not suitable for in-vivo or even in-vitro medical/biomedical applications.

Operating principles, design, and SDMFP features are given in [3]. A …

Method And Shear-Driven Micro-Fluidic Pump, Nihad E. Daidzic

Aviation Department Publications

United States Patent Application, Publication Number US 2017/0096990 A1, Publication Date April 6, 2017.

An example includes an apparatus to pump a fluid. The apparatus includes a housing extending along a length defining an elongate interior, an actuator in the housing, conforming to the elongate interior, the actuator including a plurality of lumens, each having a length extending substantially parallel to the elongate interior, each from around 10 to 200 micrometers across and an actuator configured to oscillate the actuator in the actuator housing along the length of the elongate interior with a rate differential between movement in a first …

Exploring Therapeutic Approaches For Marfan Syndrome Associated Aortic Aneurysm, Mitra Esfandiarei

Science Seminar Series

Esfandiearei will be discussing her research on understanding the underlying mechanisms contributing to the progression of aortic aneurysm in Marfan syndrome and the protective effects that exercise may have on the disease process in both laboratory animal models and human patients. Her research has been supported by the Canadian Institutes of Health Research (CIHR), Rare Diseases Foundation, and the Marfan Foundation.

Neuropeptide Modulation Of The Large Conductance Potassium (Bk) Channel In The Auditory System: Therapeutic Implications For Age-Related Hearing Loss, Ellliott James Brecht

USF Tampa Graduate Theses and Dissertations

The auditory temporal processing deficits associated with age-dependent hearing decline have been increasingly attributed to issues beyond peripheral hearing loss. Age-related hearing loss (ARHL), also known as presbycusis, is linked with changes in the expression of both excitatory and inhibitory neurotransmitters in the central auditory system. There are also age-related changes in the expression and function of the ion channels which mediate action potential firing. The slow, Ca²⁺ activated, K⁺ channels of the BK-type are essential in controlling both neurotransmitter release and neural communication via alteration of action potential durations, firing frequency, and neural adaptation. There are many …