Numerical Analysis and Scientific Computing Commons^™

Dynamic Function Learning Through Control Of Ensemble Systems, Wei Zhang, Vignesh Narayanan, Jr-Shin Li

Publications

Learning tasks involving function approximation are preva- lent in numerous domains of science and engineering. The underlying idea is to design a learning algorithm that gener- ates a sequence of functions converging to the desired target function with arbitrary accuracy by using the available data samples. In this paper, we present a novel interpretation of iterative function learning through the lens of ensemble dy- namical systems, with an emphasis on establishing the equiv- alence between convergence of function learning algorithms and asymptotic behavior of ensemble systems. In particular, given a set of observation data in a function learning task, we …

Computer Simulation Of The Light Absorption Band Of The Jumping Spider Isorhodopsin, Noah Zoldak

Honors Projects

In order to simulate the photoisomerization of the 9-cis Jumping Spider Isorhodopsin (JSiR-1) it is necessary to first simulate its light-absorption band. Here we report on the absorption band simulated using protein models constructed using the advanced Automatic Rhodopsin Modeling (a-ARM) program. A population of S₀ models was created and the corresponding S₀ to S₁ transitions were determined for each member of the resulting population. The calculation resulted in a Gaussian plot showing that the wavelength of the absorption maximum of 560 nm (a violet color) that is consistent, but red-shifted, with respect the experimentally observed value.

Hydrogen Bonding In Small Model Peptides; The Dft And Mp2 Study, Gracie Smith, Martina Kaledin

Symposium of Student Scholars

Formamide is a small model compound for the study of the peptide bond. The peptide bond links amino acids together, specifies rigidity to the protein backbone, and includes the essential docking sites for hydrogen-bond-mediated protein folding and protein aggregation, namely, the C=O acceptor and the N-H donor parts. Therefore, the infrared C=O (amide-I) and N-H (amide-A) vibrations provide sensitive and widely used probes into the structure of peptides. This computational chemistry work, we study hydrogen bonds in formamide dimer isomers. We evaluate the accuracy of the density functional theory (DFT) and many-body perturbation theory to the 2^nd order (MP2) …

Detecting Selfish Mining Attacks Against A Blockchain Using Machine Learing, Matthew A. Peterson

Theses and Dissertations

Selfish mining is an attack against a blockchain where miners hide newly discovered blocks instead of publishing them to the rest of the network. Selfish mining has been a potential issue for blockchains since it was first discovered by Eyal and Sirer. It can be used by malicious miners to earn a disproportionate share of the mining rewards or in conjunction with other attacks to steal money from network users. Several of these attacks were launched in 2018, 2019, and 2020 with the attackers stealing as much as $18 Million. Developers made several different attempts to fix this issue, but …

Denoising And Deconvolving Sperm Whale Data In The Northern Gulf Of Mexico Using Fourier And Wavelet Techniques, Kendal Mccain Leftwich

University of New Orleans Theses and Dissertations

The use of underwater acoustics can be an important component in obtaining information from the oceans of the world. It is desirable (but difficult) to compile an acoustic catalog of sounds emitted by various underwater objects to complement optical catalogs. For example, the current visual catalog for whale tail flukes of large marine mammals (whales) can identify even individual whales from their individual fluke characteristics. However, since sperm whales, Physeter microcephalus, do not fluke up when they dive, they cannot be identified in this manner. A corresponding acoustic catalog for sperm whale clicks could be compiled to identify individual …

Evaluation Of Distributed Programming Models And Extensions To Task-Based Runtime Systems, Yu Pei

Doctoral Dissertations

High Performance Computing (HPC) has always been a key foundation for scientific simulation and discovery. And more recently, deep learning models' training have further accelerated the demand of computational power and lower precision arithmetic. In this era following the end of Dennard's Scaling and when Moore's Law seemingly still holds true to a lesser extent, it is not a coincidence that HPC systems are equipped with multi-cores CPUs and a variety of hardware accelerators that are all massively parallel. Coupling this with interconnect networks' speed improvements lagging behind those of computational power increases, the current state of HPC systems is …

An Efficient Annealing-Assisted Differential Evolution For Multi-Parameter Adaptive Latent Factor Analysis, Qing Li, Guansong Pang, Mingsheng Shang

Research Collection School Of Computing and Information Systems

A high-dimensional and incomplete (HDI) matrix is a typical representation of big data. However, advanced HDI data analysis models tend to have many extra parameters. Manual tuning of these parameters, generally adopting the empirical knowledge, unavoidably leads to additional overhead. Although variable adaptive mechanisms have been proposed, they cannot balance the exploration and exploitation with early convergence. Moreover, learning such multi-parameters brings high computational time, thereby suffering gross accuracy especially when solving a bilinear problem like conducting the commonly used latent factor analysis (LFA) on an HDI matrix. Herein, an efficient annealing-assisted differential evolution for multi-parameter adaptive latent factor analysis …

Understanding Sentiment Through Context, Richard M.Crowley, M.H. Franco Wong

Research Collection School Of Accountancy

We examine whether empirical results using text-based sentiment of U.S. annual reports depend on the underlying context, within documents, from which sentiment is measured. We construct a clause-level measure of context, showing that sentiment is driven by many different contexts and that positive and negative sentiment are driven by different contexts. We then construct context-level sentiment measures and examine whether sentiment works as expected at the context-level across four prediction problems. Our results demonstrate that document-level sentiment exhibits significant noise in prediction and suggest that document-level aggregation of sentiment leads to missed empirical nuances. The contexts driving sentiment results vary …

Three Contributions To The Theory And Practice Of Optimizing Compilers, Linxiao Wang

Electronic Thesis and Dissertation Repository

The theory and practice of optimizing compilers gather techniques that, from input computer programs, aim at generating code making the best use of modern computer hardware. On the theory side, this thesis contributes new results and algorithms in polyhedral geometry. On the practical side, this thesis contributes techniques for the tuning of parameters of programs targeting GPUs. We detailed these two fronts of our work below.

Consider a convex polyhedral set P given by a system of linear inequalities A*x <= b, where A is an integer matrix and b is an integer vector. We are interested in the integer hull P_I of P which is the smallest convex polyhedral set that contains all the integer points in P. In Chapter …

Physics-Informed Neural Networks For Informed Vaccine Distribution In Heterogeneously Mixed Populations, Alvan Arulandu, Padmanabhan Seshaiyer

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Morphologically-Aware Vocabulary Reduction Of Word Embeddings, Chong Cher Chia, Maksim Tkachenko, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

We propose SubText, a compression mechanism via vocabulary reduction. The crux is to judiciously select a subset of word embeddings which support the reconstruction of the remaining word embeddings based on their form alone. The proposed algorithm considers the preservation of the original embeddings, as well as a word’s relationship to other words that are morphologically or semantically similar. Comprehensive evaluation of the compressed vocabulary reveals SubText’s efficacy on diverse tasks over traditional vocabulary reduction techniques, as validated on English, as well as a collection of inflected languages.

Meta-Complementing The Semantics Of Short Texts In Neural Topic Models, Ce Zhang, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

Topic models infer latent topic distributions based on observed word co-occurrences in a text corpus. While typically a corpus contains documents of variable lengths, most previous topic models treat documents of different lengths uniformly, assuming that each document is sufficiently informative. However, shorter documents may have only a few word co-occurrences, resulting in inferior topic quality. Some other previous works assume that all documents are short, and leverage external auxiliary data, e.g., pretrained word embeddings and document connectivity. Orthogonal to existing works, we remedy this problem within the corpus itself by proposing a Meta-Complement Topic Model, which improves topic quality …

Hyperspectral Unmixing: A Theoretical Aspect And Applications To Crism Data Processing, Yuki Itoh

Doctoral Dissertations

Hyperspectral imaging has been deployed in earth and planetary remote sensing, and has contributed the development of new methods for monitoring the earth environment and new discoveries in planetary science. It has given scientists and engineers a new way to observe the surface of earth and planetary bodies by measuring the spectroscopic spectrum at a pixel scale.

Hyperspectal images require complex processing before practical use. One of the important goals of hyperspectral imaging is to obtain the images of reflectance spectrum. A raw image obtained by hyperspectral remote sensing usually undergoes conversion to a physical quantity representing the intensity of …

Towards Qos-Based Embedded Machine Learning, Tom Springer, Erik Linstead, Peiyi Zhao, Chelsea Parlett-Pelleriti

Engineering Faculty Articles and Research

Due to various breakthroughs and advancements in machine learning and computer architectures, machine learning models are beginning to proliferate through embedded platforms. Some of these machine learning models cover a range of applications including computer vision, speech recognition, healthcare efficiency, industrial IoT, robotics and many more. However, there is a critical limitation in implementing ML algorithms efficiently on embedded platforms: the computational and memory expense of many machine learning models can make them unsuitable in resource-constrained environments. Therefore, to efficiently implement these memory-intensive and computationally expensive algorithms in an embedded computing environment, innovative resource management techniques are required at the …

Machine Learning To Predict Warhead Fragmentation In-Flight Behavior From Static Data, Katharine Larsen

Doctoral Dissertations and Master's Theses

Accurate characterization of fragment fly-out properties from high-speed warhead detonations is essential for estimation of collateral damage and lethality for a given weapon. Real warhead dynamic detonation tests are rare, costly, and often unrealizable with current technology, leaving fragmentation experiments limited to static arena tests and numerical simulations. Stereoscopic imaging techniques can now provide static arena tests with time-dependent tracks of individual fragments, each with characteristics such as fragment IDs and their respective position vector. Simulation methods can account for the dynamic case but can exclude relevant dynamics experienced in real-life warhead detonations. This research leverages machine learning methodologies to …

Dynamic Return Relationships In The Market For Cryptocurrency: A Var Approach, Julian Gouffray

James Madison Undergraduate Research Journal (JMURJ)

This paper examines how the Bitcoin-altcoin return relationship has evolved in periods between 2015 and 2020. To understand this relation, we observe data on the cryptocurrency Bitcoin and prominent altcoins Ethereum, Litecoin, Ripple, Stellar, and Monero, which collectively represent over 90% of the market throughout the observed period. We employ a vector autoregressive model (VAR) to produce forecast error variance decompositions, orthogonal impulse response functions, and Granger-causality tests. We find evidence that Bitcoin return variation has increasingly explained altcoin returns and that market inefficiency increased between 2017 and 2020, as shown by increased Granger causality between Bitcoin and altcoins. These …

Application Of Probabilistic Ranking Systems On Women’S Junior Division Beach Volleyball, Cameron Stewart, Michael Mazel, Bivin Sadler

SMU Data Science Review

Women’s beach volleyball is one of the fastest growing collegiate sports today. The increase in popularity has come with an increase in valuable scholarship opportunities across the country. With thousands of athletes to sort through, college scouts depend on websites that aggregate tournament results and rank players nationally. This project partnered with the company Volleyball Life, who is the current market leader in the ranking space of junior beach volleyball players. Utilizing the tournament information provided by Volleyball Life, this study explored replacements to the current ranking systems, which are designed to aggregate player points from recent tournament placements. Three …

A Kuramoto Model Approach To Predicting Chaotic Systems With Echo State Networks, Sophie Wu, Jackson Howe

Undergraduate Student Research Internships Conference

An Echo State Network (ESN) with an activation function based on the Kuramoto model (Kuramoto ESN) is implemented, which can successfully predict the logistic map for a non-trivial number of time steps. The reservoir in the prediction stage exhibits binary dynamics when a good prediction is made, but the oscillators in the reservoir display a larger variability in states as the ESN’s prediction becomes worse. Analytical approaches to quantify how the Kuramoto ESN’s dynamics relate to its prediction are explored, as well as how the dynamics of the Kuramoto ESN relate to another widely studied physical model, the Ising model.

Gpgpu Microbenchmarking For Irregular Application Optimization, Dalton R. Winans-Pruitt

Theses and Dissertations

Irregular applications, such as unstructured mesh operations, do not easily map onto the typical GPU programming paradigms endorsed by GPU manufacturers, which mostly focus on maximizing concurrency for latency hiding. In this work, we show how alternative techniques focused on latency amortization can be used to control overall latency while requiring less concurrency. We used a custom-built microbenchmarking framework to test several GPU kernels and show how the GPU behaves under relevant workloads. We demonstrate that coalescing is not required for efficacious performance; an uncoalesced access pattern can achieve high bandwidth - even over 80% of the theoretical global memory …

The Design And Implementation Of A High-Performance Polynomial System Solver, Alexander Brandt

Electronic Thesis and Dissertation Repository

This thesis examines the algorithmic and practical challenges of solving systems of polynomial equations. We discuss the design and implementation of triangular decomposition to solve polynomials systems exactly by means of symbolic computation.

Incremental triangular decomposition solves one equation from the input list of polynomials at a time. Each step may produce several different components (points, curves, surfaces, etc.) of the solution set. Independent components imply that the solving process may proceed on each component concurrently. This so-called component-level parallelism is a theoretical and practical challenge characterized by irregular parallelism. Parallelism is not an algorithmic property but rather a geometrical …