Data Science Commons^™

Gnns For Network Classification In Single Cell Rna Sequencing Data, Reid C. Sewell

Capstone Projects

A common technique when investigating a disease is to profile gene expression, as this gives unique insights into the functions of a cell. Gene expression data gathered from single cell RNA sequencing can be encoded into a gene co-expression network, which is a graph of potential relationships between different genes. One method for interpreting data encoded as a graph is to use a graph neural network, or GNN. This project designs and implements a GNN architecture to accomplish classification tasks on graph data. Then, given a dataset of gene co-expression networks made from multiple single cell RNA sequencing studies, the …

Resale Revolution: Trend Implications From Media Presence Transcended To Luxury Retail Markets, Penelope Prochnow

Capstone Projects

This study aims to deepen understanding of fashion trend decline from peak popularity to obsolescence, with implications for sustainability and producer profit margins. It investigates how the attributes and media presence of fashion items influence their journey from high-end editorial coverage to resale platforms. Using survival analysis to model trend lifetimes and cosine similarity metrics to compare resale and magazine keyword frequencies, alongside machine learning for price prediction, the study uncovers critical temporal patterns. Results show that resale trends reflect magazine content with a lag of approximately 18 to 30 months and draw from long-wave revivals spanning 6 to 14 …

Machine Learning Course: A 15-Week Interactive Curriculum With Code And Case Studies, Pegah Khosravi

Open Educational Resources

This open-access machine learning course is a comprehensive 15-week curriculum developed and published on GitHub with full Google Colab compatibility. It combines theoretical concepts with hands-on Python coding, real-world datasets, and structured projects covering regression, classification, clustering, deep learning, transformers, and multimodal AI. The course is designed for students, educators, and researchers interested in applied machine learning, including biomedical applications. It includes explainable AI components and ethical discussions to align with modern AI standards. The course is maintained by BioMind AI Lab at CUNY.

Optimized Student Grouping For Enhanced Classroom Performance, Kathryn E. Reardon

Honors Theses

Effective grouping methods enhance classroom collaboration and allow for a student-centered teaching approach; however, traditional grouping methods are time-consuming, subjective, and can create inconsistent group dynamics. This project addresses these challenges by employing a data-driven approach to optimize student groups based on academic performance, behavior, attendance, language barriers, and teacher preferences. The minimum viable product is a web application with an algorithm-driven system to group students and a database storage for group results. During the initiation phase, a problem was defined with a proposed solution. During the planning phase, potential design choices and grouping methods were researched and assessed. During …

Evaluating Predictive Models For Predicting Total Score Of Beef Carcasses, Emmanuel Forson

Electronic Theses and Dissertations

The beef industry plays a vital role in global agriculture, with carcass quality and consumer preference being key determinants of market success. This thesis examines predictive modeling techniques for estimating the Total Score of beef carcasses, a composite measure representing yield and quality, primarily used by the Nebraska Cattlemen Association. Using data from the Nebraska Cattlemen’s Foundation Retail Value Steer Challenge (2000–2023), the study compares the performance of First Order Multiple Linear Regression (MLR) with three machine learning techniques: K-Nearest Neighbors (KNN), Random Forest, and Gradient Boosting Machine (GBM).

The analysis focuses on six key predictors: Hot Carcass Weight, Back …

Performance Of Lasso And Ridge Regression For Variable Selection In Genome-Wide Association Studies Of Maize Flowering Time, Dipok Deb

Data Science and Data Mining

Genome-Wide Association Studies (GWAS) are instrumental in identifying genetic variants linked to complex traits, providing valuable insights into trait heritability and biological mechanisms. This study applies GWAS to investigate flowering time in maize, a critical adaptive trait, using a diverse dataset of 5,000 recombinant inbred lines across eight environments. Traditional GWAS methods often encounter challenges in high-dimensional datasets due to the presence of multiple small-effect genetic loci. To address this, we compared two penalized regression methods—LASSO and Ridge regression—to perform variable selection and regression analysis within a GWAS framework. LASSO effectively reduced the number of predictors by selecting the most …

Data Science Job Salary Prediction Using Linear Regression, Dipok Deb

Data Science and Data Mining

In the evolving landscape of data science, accurate salary prediction plays a crucial role in shaping career expectations, informing educational strategies, and guiding organizational hiring decisions. This study investigates the key factors influencing entry-level data science salaries in the United States by applying a multiple linear regression model to a recent dataset spanning from 2020 to 2024. Through data preprocessing, transformation, and diagnostic evaluation, we identify how job roles, experience levels, employment types, work arrangements, residency status, and company size impact compensation. Despite challenges such as outliers, heteroscedasticity, and non-normal residuals, model refinements like the Box-Cox transformation and variable selection …

Statistics - What Does My Data Say About Me?, Taylor Gadsden-Deterville

Student Scholar Symposium Abstracts and Posters

For my Introduction to Statistics Class, I have been tasked with collecting unique, personal data to give insight into my daily routine. I decided to record nine different outcomes (two qualitative and seven quantitative). On February 6, 2025, I began with a blank Excel sheet, and so far, I have 57 full days of data collected. I will continue monitoring my findings for the remainder of the Spring 2025 Semester. Per my project instructions, I must include tables and graphs for my qualitative and quantitative outcomes. So far, I have collected daily quantitative data on my screen time (Instagram and …

Two-Sample Bi-Directional Causality Between Two Traits With Some Invalid Ivs In Both Directions Using Gwas Summary Statistics, Siyi Chen

School of Public Health Faculty Publications

Mendelian randomization (MR) is a widely used method for assessing causal relationships between risk factors and outcomes using genetic variants as instrumental variables (IVs). While traditional MR assumes uni-directional causality, bi-directional MR aims to identify the true causal direction. In uni-directional MR, invalid IVs due to pleiotropy can violate assumptions and introduce biases. In bi-directional MR, traditional MR can be performed separately for each direction, but the presence of invalid IVs poses even greater challenges. We introduce a new bi-directional MR method incorporating stepwise selection (Bidir-SW) designed to address these challenges. Our approach leverages public genome-wide association study (GWAS) datasets …

Handwritten Digit Recognition Using Machine Learning, Dipok Deb

Data Science and Data Mining

Handwritten Digit Recognition (HDR) remains a fundamental benchmark in pattern recognition and machine learning due to its practical applications and inherent classification challenges posed by diverse handwriting styles. This study investigates and compares two classical statistical classifiers—Gaussian Naive Bayes (GNB) and Linear Discriminant Analysis (LDA)—to recognize the digits from the MNIST dataset. Both models assume underlying normality in feature distributions and offer computational efficiency, making them suitable for high-dimensional input such as image pixels. Using 60,000 training and 10,000 test samples, we evaluate model performance through accuracy, precision, recall, F1 score, and confusion matrices. The results reveal that while GNB …

Clustering Dataset Using K-Mean Clustering, Dipok Deb

Data Science and Data Mining

Clustering is a fundamental technique in unsupervised machine learning, widely applied in various domains such as pattern recognition, data segmentation, and anomaly detection. This study evaluates the performance of the K-Means clustering algorithm on multiple benchmark datasets, including low-dimensional, high-dimensional, and imbalanced datasets. The clustering results are assessed using four key evaluation metrics: Mean Squared Error (MSE), Adjusted Rand Index (ARI), Normalized Mutual Information (NMI), and Silhouette Score. Experimental results demonstrate that K-Means performs effectively on datasets with well-separated clusters, particularly in high-dimensional spaces, where it achieves near-perfect clustering accuracy. However, its performance deteriorates in datasets with overlapping clusters and …

Dynamic Approaches To Missing Data In Healthcare: Evaluating Ensemble Models, Feature Selection, And Meta-Features, Dylan Dominguez Sulca

Theses and Dissertations

Missing data is pervasive in healthcare, where incomplete observations commonly arise from patient dropout, sensor failures, or privacy constraints. This research presents an investigation into handling such data, focusing on (1) Missingness-Aware Dynamic Ensemble Weighting (MDEW), (2) feature selection under varying missing rates, (3) autoencoder-based imputation (ODAE), and (4) a meta-feature analysis guiding pipeline selection. We evaluate our experiments on four diverse datasets, Cleveland Heart Disease, Diabetic Retinopathy, Breast Cancer Wisconsin, EEG Eye State. Our research shows that MDEW adaptively selects imputer classifier pipelines, outperforming single model and uniform averaging baselines at moderate to high missingness 10% to 50%. Filter …

Aleci: An R Package For Non-Parametric Confidence Intervals On Accumulated Local Effects Plots, Matthew R. Lister

All Graduate Reports and Creative Projects, Fall 2023 to Present

Machine learning models can take a collection of inputs and craft an output. The mathematical formulas these models use to calculate their outputs easily become too complex or time consuming for a human to analyze. Collectively, we refer to these as black box models. Accumulated local effects plots (ALE) are a method for adding interpretability and visibility into the effects that individual variables contribute to the predictions made by black box models. The method designed by D.W. Apley calculates equally spaced point estimates of the response value to construct a graph across the range of the variable of interest. AleCI …

Land8fire: A Complete Study On Wildfire Segmentation Through Comprehensive Review, Human-Annotated Multispectral Dataset, And Extensive Benchmarking, Anh Tran

Data Science Undergraduate Honors Theses

Early and accurate wildfire detection is critical for minimizing environmental damage and ensuring a timely response. However, existing satellite-based wildfire datasets suffer from limitations such as coarse ground truth, poor spectral coverage, and class imbalance, which hinder progress in developing robust segmentation models. In this paper, we introduce Land8Fire, a new large-scale wildfire segmentation dataset composed of over 20,000 multispectral image patches derived from Landsat 8 and manually annotated for high-quality fire masks. Building on the ActiveFire dataset, Land8Fire improves ground truth reliability and offers predefined splits for consistent benchmarking. We evaluate a range of state-of-the-art convolutional and transformer-based models, …

Toward The Application Of Natural Language Processing In Electronic Health Record Analysis For Taxonomy Development, Latoya Mcdonald

All Dissertations

Electronic health records (EHRs) are pivotal resources for nurse practice because they increase the timeliness and reliability of patient information at the point of care and support access by multiple healthcare providers and the individual patients themselves. However, it is widely recognized that data extraction from EHRs is challenging due to the variability in the language used in clinical care notes and the lack of standardized terminology across healthcare systems. The broad objective of this dissertation is to develop taxonomy-based classification models for nursing care by applying feature engineering approaches to EHRs that include nursing care of ostomy patients following …

An Analysis Of Bias Towards Women In Large Language Models Using Likert Scale Evaluations, Sarah T. Fieck

Electrical Engineering and Computer Science (MS) Theses

Closed-source large language models (LLMs) developed by large technology companies continue to grow in popularity. However, ethical conversations surrounding the safety of model outputs have been a prominent topic of discussion. This project aims to assess three leading closed-source LLMs: OpenAI’s ChatGPT, Google’s Gemini, and Anthropic’s Claude, to analyze how their outputs perform when treated as a subject of several psychological evaluation scales measuring biased behaviors against women. The Ambivalent Sexism Index, Modern Sexism Scale, and Belief in Sexism Shift evaluations were used to get descriptions of how the LLMs respond to traditional and modern prompts involving sexism and gender …

A Narrative-Focused Machine Learning Approach To Predicting Feature Film Success, Arisa T. Trombley

Electrical Engineering and Computer Science (MS) Theses

For decades, the field of film production has been driven by marketability, and it has relied on gut feelings and subjectivity to produce feature films. The analysis of the relationship between a screenplay’s narrative and a film’s success has been widely overlooked due to the challenges involved in data acquisition and complexity. This study investigates the predictive power of narrative structure on film success and aims to build evidence for hypothesized narrative principles. The results suggest that narrative structural elements exhibit moderate predictive power, with strong support for the alignment of the 2nd act crucial moments and the 2nd act …

Analytics Insights From Text: Machine Learning, Ai, And Sentiment Analysis On Beige Books, Charlie Smith

Graduate Theses and Dissertations (2019 - present)

Business analytics is about drawing actionable insights from data. These distinct but connected essays represent a novel approach to explore how natural language processing (NLP) advances and machine learning can transform unstructured text data into actionable conclusions. Essay 1 provides a broad framework. Essay 2 strengthens the sentiment analysis with the most recent artificial intelligence methodologies for capturing nuanced sentiment in complex texts. Essay 3 applies those insights to forecast recessions using topics that can be readily interpreted and applied.

The research demonstrates how these methodologies can be applied to enhance understanding of the same dataset, Beige Books. Published by …

Comparative Analysis Of Regression And Random Forest Models For Player Performance Prediction In The Mls, Joshua Clement Madeti

Senior Honors Theses

Advanced technology and analytics have transformed the world and have benefited several industries throughout, the sport industry being one of them. Data is constantly generated during sports and requires post-game or post-season analysis which is crucial to team and player success. In this paper, the researcher will focus on the impact of analytics on soccer and soccer players. With over three billion active fans, soccer is the most famous sport in the world yet, when it comes to analytics, it is lagging. The thesis includes a comparative study of multiple linear regression and random forest regression to explore whether these …

From Seasonality To Causality: Understanding Urban Water Usage Using Statistical And Machine Learning Models, Kelsey Hawkins

Electrical Engineering and Computer Science (MS) Theses

This study examines the relationship between climate conditions and residential water usage, focusing on how seasonal and environmental changes influence water consumption. Utilizing data from over 100,000 households across three micro-climate zones for over a five-year period, we apply statistical analysis and machine learning techniques to assess the impact of temperature, precipitation, evapotranspiration, and location on water usage. By integrating climate and billing data, this research provides a data-driven approach on water usage behaviors in Irvine, CA, in collaboration with Irvine Ranch Water District (IRWD).

Our analysis utilizes time series modeling, including a Seasonal Autoregressive Integrated Moving Average (SARIMA) and …