Data Science Commons^™

Time Dependent Analysis Of Rat Microglial Surface Markers In Traumatic Brain Injury Reveals Dynamics Of Distinct Cell Subpopulations, Assaf Gottlieb, Naama Toledano-Furman, Karthik S Prabhakara, Akshita Kumar, Henry W Caplan, Supinder Bedi, Charles S Cox, Scott D Olson

Faculty, Staff and Student Publications

Traumatic brain injury (TBI) results in a cascade of cellular responses, which produce neuroinflammation, partly due to the activation of microglia. Accurate identification of microglial populations is key to understanding therapeutic approaches that modify microglial responses to TBI and improve long-term outcome measures. Notably, previous studies often utilized an outdated convention to describe microglial phenotypes. We conducted a temporal analysis of the response to controlled cortical impact (CCI) in rat microglia between ipsilateral and contralateral hemispheres across seven time points, identified microglia through expression of activation markers including CD45, CD11b/c, and p2y12 receptor and evaluated their activation state using additional …

A Web User Interface Image Processing Tool For Classifying The Extent Of Dementia Across Alzheimer’S, Sathvik Prasad Palyam, Robin Ghosh

ATU Scholars Symposium

Alzheimer's disease (AD) is the most common form of dementia. This project used four image specifications to classify the dementia stages in each patient applying the CNN algorithm. Employing the CNN-based in silico model, the authors successfully classified and predicted the different AD stages and got around 97.19% accuracy. Later, a web interface tool was developed to educate doctors or researchers to check the patients' dementia level based on the MRI brain images and suggest symptoms that strengthen the predicted level of AI. A user uploads the brain scan, which is sent to the backend server, where the image is …

How Students Use The Services Available From Lindenwood Universities Library, Jennifer Sailor

2022 Student Academic Showcase

Student Assessment Scholars took on the Library Services stakeholder proposal. Their goal was to find how students use the service available from Lindenwood Universities Library. Through evidence, it was found that students have a positive sentiment towards the Lindenwood’s Library Services. That the Students want longer hours, better marketing, and find one of the best services being the building itself. Lindenwood Universities Library Services are similar to the other schools in the athletic conference. Lindenwood University houses a Maker Lab, Career Services, and technology rentals like the other universities, but Lindenwood students were not aware of them. Overall, students were …

The Impact Of Pediatric Opioid-Related Visits On Us Emergency Departments, Tiffany Champagne-Langabeer, Marylou Cardenas-Turanzas, Irma T Ugalde, Christine Bakos-Block, Angela L Stotts, Lisa Cleveland, Steven Shoptaw, James R Langabeer

Faculty, Staff and Student Publications

BACKGROUND: While there is significant research exploring adults' use of opioids, there has been minimal focus on the opioid impact within emergency departments for the pediatric population.

METHODS: We examined data from the Agency for Healthcare Research, the National Emergency Department Sample (NEDS), and death data from the Centers for Disease Control and Prevention. Sociodemographic and financial variables were analyzed for encounters during 2014-2017 for patients under age 18, matching diagnoses codes for opioid-related overdose or opioid use disorder.

RESULTS: During this period, 59,658 children presented to an ED for any diagnoses involving opioids. The majority (68.5%) of visits were …

Intra-Hour Solar Forecasting Using Cloud Dynamics Features Extracted From Ground-Based Infrared Sky Images, Guillermo Terrén-Serrano

Electrical and Computer Engineering ETDs

Due to the increasing use of photovoltaic systems, power grids are vulnerable to the projection of shadows from moving clouds. An intra-hour solar forecast provides power grids with the capability of automatically controlling the dispatch of energy, reducing the additional cost for a guaranteed, reliable supply of energy (i.e., energy storage). This dissertation introduces a novel sky imager consisting of a long-wave radiometric infrared camera and a visible light camera with a fisheye lens. The imager is mounted on a solar tracker to maintain the Sun in the center of the images throughout the day, reducing the scattering effect produced …

Mapping The Impact Of A Trailway System On The Amount Of Trash Present Within Two Watersheds Of Lynchburg City, Virginia, Lillian Smith

Student Scholar Showcase

Transportation of trash debris within water systems is a prominent occurrence which has been linked to natural and artificial processes such as wind, rain, and littering. Recreational areas, such as activities along greenway trails, have been determined to be a source of debris found in waterways. This study examines whether the presence of an established recreational trail system limits trash accumulation in the entirety of a watershed. Trash data collected at Blackwater Creek, which contains an established trail system, was compared to trash data collected at Fishing Creek, containing a non-established trail system, to answer this hypothesis. A distance of …

Toward Suicidal Ideation Detection With Lexical Network Features And Machine Learning, Ulya Bayram, William Lee, Daniel Santel, Ali Minai, Peggy Clark, Tracy Glauser, John Pestian

Northeast Journal of Complex Systems (NEJCS)

In this study, we introduce a new network feature for detecting suicidal ideation from clinical texts and conduct various additional experiments to enrich the state of knowledge. We evaluate statistical features with and without stopwords, use lexical networks for feature extraction and classification, and compare the results with standard machine learning methods using a logistic classifier, a neural network, and a deep learning method. We utilize three text collections. The first two contain transcriptions of interviews conducted by experts with suicidal (n=161 patients that experienced severe ideation) and control subjects (n=153). The third collection consists of interviews conducted by experts …

Privacy-Preserving Logistic Regression With Secret Sharing, Ali Reza Ghavamipour, Fatih Turkmen, Xiaoqian Jiang

Faculty, Staff and Student Publications

BACKGROUND: Logistic regression (LR) is a widely used classification method for modeling binary outcomes in many medical data classification tasks. Researchers that collect and combine datasets from various data custodians and jurisdictions can greatly benefit from the increased statistical power to support their analysis goals. However, combining data from different sources creates serious privacy concerns that need to be addressed.

METHODS: In this paper, we propose two privacy-preserving protocols for performing logistic regression with the Newton-Raphson method in the estimation of parameters. Our proposals are based on secure Multi-Party Computation (MPC) and tailored to the honest majority and dishonest majority …

Building Interpretable Methods For Identifying Bridge Maintenance Patterns, Akshay Kale

Computer Science Graduate Research Workshop

No abstract provided.

Foam-Based Floatovoltaics: A Potential Solution To Disappearing Terminal Natural Lakes, Koami Soulemane Hayibo, Joshua M. Pearce

Electrical and Computer Engineering Publications

Terminal lakes are disappearing worldwide because of direct and indirect human activities. Floating photovoltaics (FPV) are a synergistic system with increased energy output because of water cooling, while the FPV reduces water evaporation. This study explores how low-cost foam-based floatovoltaic systems can mitigate the disappearance of natural lakes. A case study is performed on 10%–50% FPV coverage of terminal and disappearing Walker Lake. Water conservation is investigated with a modified Penman-Monteith evapotranspiration method and energy generation is calculated with an operating temperature model experimentally determined from foam-based FPV. Results show FPV saves 52,000,000 m3/year of water and US$6,000,000 at 50% …

A New Application Of The Central Limit Theorem, Kenneth Winters

Selected Honors Theses

This paper discusses the Central Limit Theorem (CLT) and its applications. The paper gives an introduction to what the CLT is and how it can be applied to real life. Additionally, the paper gives a conceptual understanding of the theorem through various examples and visuals. The paper discusses the applications of the CLT in fields such as computer science, psychology, and political science. The author then suggests a new mathematical theorem as an application of the CLT and provides a proof of the theorem. The new theorem relates to expected value and probabilities of random variables and provides a link …

Unsupervised Learning With Word Embeddings Captures Quiescent Knowledge From Covid-19 And Materials Science Literature, Tasnim H. Gharaibeh

Dissertations

Millions of scientific papers are produced each year and the scientific literature is continuing to grow at a head-spinning speed. Thus, massive scientific knowledge exists in solid text, but all these publications make it difficult, if not impossible, for researchers to keep in up to date with discoveries, even within a narrow scientific area. This massive amount of information also makes it difficult to find implicit and hidden connections, relationships, and dependencies within the information that may guide the direction of future research or lead to valuable new insights. So, there is a need for algorithms or models that can …

Disaster Site Structure Analysis: Examining Effective Remote Sensing Techniques In Blue Tarpaulin Inspection, Madeline G. Miles

Theses

This thesis aimed to evaluate three methods of analyzing blue roofing tarpaulin (tarp) placed on homes in post natural disaster zones with remote sensing techniques by assessing the different methods- image segmentation, machine learning (ML), and supervised classification. One can determine which is the most efficient and accurate way of detecting blue tarps. The concept here was that using the most efficient and accurate way to locate blue tarps can aid federal, state, and local emergency management (EM) operations and homeowners. In the wake of a natural disaster such as a tornado, hurricane, thunderstorm, or similar weather events, roofs are …

Assessing Security Risks With The Internet Of Things, Faith Mosemann

Senior Honors Theses

For my honors thesis I have decided to study the security risks associated with the Internet of Things (IoT) and possible ways to secure them. I will focus on how corporate, and individuals use IoT devices and the security risks that come with their implementation. In my research, I found out that IoT gadgets tend to go unnoticed as a checkpoint for vulnerability. For example, often personal IoT devices tend to have the default username and password issued from the factory that a hacker could easily find through Google. IoT devices need security just as much as computers or servers …

The Role Of Physical Geographic Features In Video Games, Dexter Ferguson

Theses

This thesis examines how physical geographic features affect individuals when interacting with video game environments. There are very few studies on the geography of video games. I aim to bridge the gap between game studies and geography, a naturally occurring link. The observation of elements such as the geography of an area is critical when exploring an individual’s perception of a video game environment. Individuals interact with the geography of their location on a day-to-day basis, whether it be physical or human geography; how they can relate a video game’s geography to the real world dramatically affects their immersion. An …

Quadratic Neural Network Architecture As Evaluated Relative To Conventional Neural Network Architecture, Reid Taylor

Senior Theses

Current work in the field of deep learning and neural networks revolves around several variations of the same mathematical model for associative learning. These variations, while significant and exceptionally applicable in the real world, fail to push the limits of modern computational prowess. This research does just that: by leveraging high order tensors in place of 2nd order tensors, quadratic neural networks can be developed and can allow for substantially more complex machine learning models which allow for self-interactions of collected and analyzed data. This research shows the theorization and development of mathematical model necessary for such an idea to …

Assessing Photogrammetry Artificial Intelligence In Monumental Buildings’ Crack Digital Detection, Said Maroun, Mostafa Khalifa, Nabil Mohareb

Architecture and Planning Journal (APJ)

Natural and human-made disasters have significant impacts on monumental buildings, threatening them from being deteriorated. If no rapid consolidations took into consideration traumatic accidents would endanger the existence of precious sites. In this context, Beirut's enormous 4th of August 2020 explosion damaged an estimated 640 historical monuments, many volunteers assess damages for more than a year to prevent the more crucial risk of demolitions. This research aims to assist the collaboration ability among photogrammetry science, Artificial Intelligence Model (AIM) and Architectural Coding to optimize the process for better coverage and scientific approach of data specific to the crack disorders to …

Objective Measure Of Working Memory Capacity Using Eye Movements, James Owens, Gavindya Jayawardena, Yasasi Abeysinghe, Vikas G. Ashok, Sampath Jayarathna

Undergraduate Research Symposium

Human-autonomy teaming (HAT) has become an important area of research due to the autonomous systems being developed for different applications, such as remotely controlled aircraft. Many remotely controlled vehicles will be controlled by automated systems, with a human monitor that may be monitoring multiple vehicles simultaneously. The attention and working memory capacity of operators of remote-controlled vehicles must be maintained at appropriate levels during operation. However, there is currently no direct method of determining working memory capacity, which is important because it is a measure for how memory is being stored for a short term and interacting with long term …

Fusionai, A Dna-Sequence-Based Deep Learning Protocol Reduces The False Positives Of Human Fusion Gene Prediction, Pora Kim, Hua Tan, Jiajia Liu, Himansu Kumar, Xiaobo Zhou

Faculty, Staff and Student Publications

Even though there were many tool developments of fusion gene prediction from NGS data, too many false positives are still an issue. Wise use of the genomic features around the fusion gene breakpoints will be helpful to identify reliable fusion genes efficiently. For this aim, we developed FusionAI, a deep learning pipeline predicting human fusion gene breakpoints from DNA sequence. FusionAI is freely available via https://compbio.uth.edu/FusionGDB2/FusionAI. For complete details on the use and execution of this protocol, please refer to Kim et al. (2021b).

How Graduate Student Fellows Enhance What A Center For Digital Scholarship Does, Ben B. Chiewphasa

Transforming Libraries for Graduate Students

Multiple disciplines are increasingly embracing data science and digital scholarship. However, insufficient training for digital and computational methodologies within subject/departmental silos means that these needs often get overlooked. Opportunities for learning how to teach technical concepts (i.e., how to handle troubleshooting, live participatory coding, etc.) are also rare or non-existent via departmental offerings. To respond to these needs, the Navari Family Center for Digital Scholarship launched its Pedagogy Fellowship Program in Fall 2021 where Notre Dame PhD students/candidates build their instructional expertise and experience related to digital scholarship with an added bonus of enhancing their competitiveness on the job market. …