Other Computer Sciences Commons^™

Coordinating Instruments For Multi-Messenger Astrophysics, Daisy Wang, Ye Htet, Marion Sudvarg, Roger Chamberlain, Jeremy Buhler, James Buckley

Computer Science Faculty Research & Creative Works

In multi-messenger astrophysics, signals of multiple types (e.g., gravitational waves, neutrinos, electromagnetic waves) are combined in an effort to learn more about the observed phenomena of interest. The Advanced Particle-astrophyics Telescope (APT) is a mission concept for a space-borne instrument that detects gammaray bursts (GRBs) omnidirectionally, facilitating multi-messenger observations by identifying and localizing celestial events of interest. Here, we describe the on-instrument computations for APT and its Antarctic Demonstrator (ADAPT) as well as techniques for follow-up observations of transient events.

8-Page Zine Extra Credit Assignment, Ricaute Rogers

Open Educational Resources

This is an 8-page minizine extra credit assignment that put into practice the concepts learned in CIS100.

Pure And Strong Nash Equilibrium Computation In Compactly Representable Aggregate Games, Jared Soundy, Mohammad T. Irfan, Hau Chan

Research & Publications

Aggregate games model interdependent decision making when an agent’s utility depends on their own choice and the aggregation of everyone's choices. We define a compactly representable subclass of aggregate games we call additive aggregate games, which encompasses popular games like congestion games, anonymous games, Schelling games, etc. We study computational questions on pure Nash equilibrium (PNE) and pure strong Nash equilibrium (SNE). We show that PNE existence is NP-complete for very simple cases of additive aggregate games. We devise an efficient algorithmic scheme for deciding the existence of a PNE and computing one (if it exists) for bounded aggregate space. …

Full-Stack Web Applications: Infrastructure, Development Pipelines & Devsecops, Yassine Chahid, Patrick Slattery

Publications and Research

This research explores emerging development methodologies and technologies which facilitate the deployment and maintenance of software applications. It evaluates architectural styles for the development of software such as monolithic (legacy) and microservice models, with a focus on their key differences such as scalability or project structure through to the development of an application. By examining methodologies such as Agile and continuous integration/continuous development pipelines along with the deployment tools Docker and Git for version/release control, the study analyzes how these innovations speed up development, improve existing practices, and serve as the foundation for development operations. Cloud solutions for tasks such …

Advancements In Refreshable Braille Display Technology: A Comprehensive Survey, Maryam Etezad, Rajeev Joshi, Franceli L. Cibrian

Engineering Faculty Articles and Research

This paper provides a comprehensive mapping literature review of the advancements in refreshable Braille display (RBD) technology, which employs dynamically movable pins or dots to render Braille characters for individuals with blindness and visual impairment. This literature review, which includes 96 papers, aims to summarize the current evidence on six distinct types of RBDs: piezoelectric, electromagnetic, electroactive polymer (EAP), pneumatic, shape memory alloy (SMA), and microfluidic technologies. For each type, we discuss the underlying mechanisms, alongside the current trends and research opportunities. This comparative analysis aims to inform the selection of appropriate RBD technology based on specific user needs and …

Machine Learning: Neural Networking With Relu And Optimization, Aidan Redmond Brownell

Undergraduate Theses, Capstones, and Recitals

At its core, learning is an algorithmic process: it begins with input data, undergoes a series of transformations or computations, and yields an output intended to solve a specific task. This output is then compared against a target or desired result, and the internal mechanisms are updated based on how well the output aligns with expectations. While this feedback-driven process occurs almost effortlessly in humans, it is a far more structured, deliberate, and computationally intensive undertaking for machines.

Basic Theory And Implementations Of Quantum Error Correction, Derek Rodriguez

Undergraduate Theses, Capstones, and Recitals

The introduction of quantum computing has presented algorithmic solutions to computationally difficult challenges that are far more efficient than those of classical computers. These algorithms leverage the properties of quantum mechanics to manipulate the quantum properties of subatomic particles, requiring immense precision and stability. Current quantum hardware, however, is too noisy and introduces too many errors for these algorithms to be useful in practice, necessitating the use of error correction algorithms. This field survey seeks to introduce various principles of quantum mechanics relevant to quantum computing and quantum error correction (QEC), detail the implementation and motivations of a basic QEC …

The Critical Plastocapillary Number For A Newtonian Liquid Filament Embedded Into A Viscoplastic Fluid, Mohammad Tanver Hossain, Wonsik Eom, Arjun Shah, Andrew Lowe, Douglas Fudge, Sameh H. Tawfick, Randy Ewoldt

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The yield stress of a viscoplastic material can stabilize an embedded fluid tunnel against capillarity-induced breakup, enabling remarkable technologies such as embedded 3D printing of intricate, freeform, and small components. However, there is persistent disagreement in the published literature between the observed minimum stable diameter, 𝑑min, and the theoretical plastocapillary length 𝑝𝑐 = 2𝛤∕𝜎𝑦, with interfacial tension 𝛤 and bath yield stress 𝜎𝑦, leading to a prior hypothesis that the apparent surface tension 𝛤 is much smaller to enforce 𝑑min = 𝑝𝑐 . Here we introduce and experimentally test a new hypothesis that the critical diameter is set by the …

Tellings Of The Pacific Ocean: A Landscape-Based Approach For Multispecies Design And Hci, Maliheh Ghajargar

Engineering Faculty Articles and Research

Environmental disturbances induced by climate change have caused significant changes in our ecosystems and are threatening the health of our environments. As a response to this issue, a growing body of work has emerged in HCI and design, which seeks to foreground more-than-human stories in support of making more sustainable and just futures. This research contributes to this broad agenda by probing graphic novels as a multispecies storytelling method for design and HCI. Combining ideas from Anna Tsing’s adventures of landscape and from HCI and design’s use of sequential art (e.g., storyboards), we use landscape as the main protagonist of …

Video Game Hacking, A General Problem With Generalized Solutions, Luke Rowe

Master's Theses

As video games continue to get more popular and lucrative, the number of malicious actors seeking to exploit them grows with it. As this industry expands, so does the importance of securing games against cheating and abuse. This thesis aims to educate developers to help mitigate the abuse of video games by these malicious actors. The goal of this thesis is to provide a foundational framework for thinking like a hacker and how to make games harder to abuse once a hacker bypasses conventional anti-cheat software.

This thesis outlines some of the most common cheating methods and provides general context …

Optical Character Recognition For Early Handwriting Legibility Assessment, Franceli L. Cibrian, Kayla Anderson, Yingying 'Yuki' Chen, Lauren Min, Lizbeth Escobedo

Engineering Faculty Articles and Research

Monitoring children’s handwriting, such as avoiding writing assignments, displaying uneven letter formation, or showing slow writing speed, can help identify developmental and academic issues early. Poor handwriting affects up to 34% of children, leading to academic and self-esteem challenges. Handwriting assessments, typically conducted by teachers, are often delayed due to workload and could be subjective and inconsistent. This paper explores the potential of Optical Character Recognition (OCR) technology to augment and ease handwriting assessments. Based on an evaluation of 10 OCR algorithms using 33 handwriting samples assessed by two experts, the research indicates that Pen to Print and Google are …

Integrative Computational Modeling Of Distinct Binding Mechanisms For Broadly Neutralizing Antibodies Targeting Sars-Cov-2 Spike Omicron Variants: Balance Of Evolutionary And Dynamic Adaptability In Shaping Molecular Determinants Of Immune Escape, Mohammed Alshahrani, Vedant Parikh, Brandon Foley, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

In this study, we conducted a comprehensive analysis of the interactions between the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein and four neutralizing antibodies—S309, S304, CYFN1006, and VIR-7229. Using integrative computational modeling that combined all-atom molecular dynamics (MD) simulations, mutational scanning, and MM-GBSA binding free energy calculations, we elucidated the structural, energetic, and dynamic determinants of antibody binding. Our findings reveal distinct dynamic binding mechanisms and evolutionary adaptation driving the broad neutralization effect of these antibodies. We show that S309 targets conserved residues near the ACE2 interface, leveraging synergistic van der Waals and electrostatic interactions, while S304 focuses on …

Towards Multi-Modal Multi-Document Understanding Capabilities In Foundation Models, Chuhan Li

Computer Science Theses

Contemporary foundation models are predominantly evaluated on isolated documentor image-understanding tasks, thereby overlooking the inherent multimodal multi-document reasoning that characterizes scientific inquiry. To bridge this gap, M3SCIQA is introduced, aMulti-Modal,Multi-document Scientific Question Answering benchmark crafted to test foundation models in practical scientific research settings. A comprehensive evaluation of 18 leading foundation models shows a substantial performance gap between models and human experts. Detailed error analysis reveals persistent deficiencies in both scientific visual reasoning tasks and long-range retrieval. Addressing the former, SPACECUE offers a concise yet effective visual prompting that overlays grid coordinates and Semantic-SAM masks …

Programming A More Efficient Onboarding Process For New Employees, Long H. Pham

Undergraduate Honors Theses

The current onboarding process for new hires in the University of San Diego’s Shiley-Marcos School of Engineering is inefficient. There is no central location where new hires and administrators can track onboarding progress. Both parties have to manage multiple email chains and write their own reminders to keep track of everything. This leads to delays, missing deadlines, and confusion for both parties. A web-based onboarding application has been developed recently to address these issues and streamline the onboarding process for new hires. However, this application contains several accessibility issues and does not follow all of the standards for effective employee …

Hybrid Graph-Recurrent Architecture For Citation Recommendation Via Future Embedding Forecasting, Mohammad Ausaf Ali Haqqani

Computer Science and Engineering Theses and Dissertations

The rapid expansion of scientific literature has intensified the challenge of identifying relevant citations, particularly for newly published or under-cited papers. Traditional citation recommendation systems typically model static relationships or respond to past citation activity, offering limited predictive power for emerging works. In response, this thesis presents a temporal modeling framework for citation recommendation that anticipates future scholarly relevance by forecasting the latent representations of academic papers.

Building on prior work that utilized Temporal Graph Networks (TGNs) to model dynamic citation flows, we propose Graph-Time, a hybrid architecture that integrates a Graph Transformer with a GRU-based time series predictor. The …

Real-World Implementation Of A Noninvasive, Ai-Augmented, Anemia-Screening Smartphone App And Personalization For Hemoglobin Level Self-Monitoring, Robert G. Mannino, Julie Sullivan, Jennifer K. Frediani, Paul George, Jeremy Whitson, James Tumlin, L. Andrew Lyon, Erika A. Tyburski, Wilbur A. Lam

Engineering Faculty Articles and Research

Anemia, characterized by low blood hemoglobin (Hgb) levels, afflicts >2 billion individuals worldwide. Here, we report real-world data generated by a smartphone app that noninvasively screens for anemia using only “fingernail selfies.” App data for anemia screening were obtained from >1.4 million uses across the United States enabling geographic mapping of Hgb levels. Of those, 9,061 users also self-reported complete blood count Hgb levels for comparison, resulting in accuracy and performance that match gold standard laboratory testing and a sensitivity and specificity of 89% and 93%, respectively, when using an anemia cutoff of 12.5 g/dL. Geotagged data enabled construction of …

Magic: The Gathering Deck Testing And Optimization, Ian B. Watson

Honors Theses

The goal of this project is to provide a tool for players of the trading card game Magic: the Gathering to determine whether or not a given deck is optimally built by outputting relevant information regarding its optimality. This is done through a simulator that plays a one-sided game, recording what cards are played, what turn they are played, and how much mana is left over at the end of every turn. The simulator was tested with both optimized and unoptimized decks to show how it can be used to diagnose both.

Optimizing Information Security In Cloud Environments: A Risk Management Approach And Guide For Enterprise Cloud Security, Joshua Olusegun Oyeniyi, Oluwashina Akinloye Oyeniran

Journal of Cybersecurity Education, Research and Practice

In recent years, cloud computing has become increasingly integral to organizational operations due to its scalability, accessibility and cost effectiveness in managing data and resources. However, the rise in security threats and attacks on cloud environments necessitates having robust measures in place to protect data confidentiality, integrity and availability. This paper presents an optimized approach to cloud information security management by reviewing the current threat landscape, evaluating key risk management frameworks, and provided practical solutions for enhancing enterprise cloud security. The study examined three leading cloud security frameworks: the Cloud Controls Matrix (CCM) known for its cloud-specific controls, the NIST …

Designing Ai-Driven Dining: A Ux Approach To Enhancing The Self-Service Experience, Kaylin Joung, Yuki Hayashi, Dailuaine Esguerra

Undergraduate Research Symposium Posters

Artificial intelligence has transformed many industries, yet its integration into self-dining experiences is still emerging. This research explores how AI can enhance self-dining by introducing technology like interactive kiosks and robot servers to improve efficiency, personalization, and customer convenience. By addressing current gaps, we aim to create a more seamless and engaging dining experience.

Supporting Novice Programmers With Scaffolded And Open-Ended Generative Ai Interfaces: Insights From A Design-Based Research Study, Justin Olmanson, Azadeh Hassani, Gretchen K. Larsen

Department of Teaching, Learning, and Teacher Education: Faculty Publications

In this study, we explore student experiences in coding and learning programming with scaffolded and unscaffolded generative AI interfaces. Specifically, we supported higher education students in using ChatGPT, an open ended interface for interacting with generative AI; and Giuseppe, a specialized interface with an OpenAI backend service that offers personalized supports specifically for helping students overcome early-stage challenges in learning to code, and working on education technology prototyping projects. This study contributes to the field by offering design insights for scaffolding initial learning interactions between generative AI interfaces and novice programmers. Our findings suggest that those new to coding welcome …