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User-Centered Design Of Multi-Gene Sequencing Panel Reports For Clinicians., Elizabeth Cutting, Meghan Banchero, Amber L Beitelshees, James J Cimino, Guilherme Del Fiol, Ayse P Gurses, Mark A Hoffman, Linda Jo Bone Jeng, Kensaku Kawamoto, Mark Kelemen, Harold Alan Pincus, Alan R Shuldiner, Marc S Williams, Toni I Pollin, Casey Lynnette Overby 2016 Children's Mercy Kansas City

User-Centered Design Of Multi-Gene Sequencing Panel Reports For Clinicians., Elizabeth Cutting, Meghan Banchero, Amber L Beitelshees, James J Cimino, Guilherme Del Fiol, Ayse P Gurses, Mark A Hoffman, Linda Jo Bone Jeng, Kensaku Kawamoto, Mark Kelemen, Harold Alan Pincus, Alan R Shuldiner, Marc S Williams, Toni I Pollin, Casey Lynnette Overby

Manuscripts, Articles, Book Chapters and Other Papers

The objective of this study was to develop a high-fidelity prototype for delivering multi-gene sequencing panel (GS) reports to clinicians that simulates the user experience of a final application. The delivery and use of GS reports can occur within complex and high-paced healthcare environments. We employ a user-centered software design approach in a focus group setting in order to facilitate gathering rich contextual information from a diverse group of stakeholders potentially impacted by the delivery of GS reports relevant to two precision medicine programs at the University of Maryland Medical Center. Responses from focus group sessions were transcribed, coded and …


Give-Me: Gamification In Virtual Environments For Multimodal Evaluation - A Framework, Wai L. Khoo 2016 CUNY Graduate Center

Give-Me: Gamification In Virtual Environments For Multimodal Evaluation - A Framework, Wai L. Khoo

Dissertations, Theses, and Capstone Projects

In the last few decades, a variety of assistive technologies (AT) have been developed to improve the quality of life of visually impaired people. These include providing an independent means of travel and thus better access to education and places of work. There is, however, no metric for comparing and benchmarking these technologies, especially multimodal systems. In this dissertation, we propose GIVE-ME: Gamification In Virtual Environments for Multimodal Evaluation, a framework which allows for developers and consumers to assess their technologies in a functional and objective manner. This framework is based on three foundations: multimodality, gamification, and virtual reality. It …


Landmark Detection With Surprise Saliency Using Convolutional Neural Networks, Feng Tang, Damian Lyons, Daniel Leeds 2016 Fordham University

Landmark Detection With Surprise Saliency Using Convolutional Neural Networks, Feng Tang, Damian Lyons, Daniel Leeds

Faculty Publications

Abstract—Landmarks can be used as reference to enable people or robots to localize themselves or to navigate in their environment. Automatic definition and extraction of appropriate landmarks from the environment has proven to be a challenging task when pre-defined landmarks are not present. We propose a novel computational model of automatic landmark detection from a single image without any pre-defined landmark database. The hypothesis is that if an object looks abnormal due to its atypical scene context (what we call surprise saliency), it then may be considered as a good landmark because it is unique and easy to spot by …


Fast Covariant Vlad For Image Search, Wan-Lei ZHAO, Chong-wah NGO, Hanzi WANG 2016 Singapore Management University

Fast Covariant Vlad For Image Search, Wan-Lei Zhao, Chong-Wah Ngo, Hanzi Wang

Research Collection School Of Computing and Information Systems

Vector of locally aggregated descriptor (VLAD) is a popular image encoding approach for its simplicity and better scalability over conventional bag-of-visual-word approach. In order to enhance its distinctiveness and geometric invariance, covariant VLAD (CVLAD) is proposed to pool local features based on their dominant orientations/characteristic scales, which leads to a geometric-aware representation. This representation achieves rotation/scale invariance when being associated with circular matching. However, the circular matching induces several times of computation overhead, which makes CVLAD hardly suitable for large-scale retrieval tasks. In this paper, the issue of computation overhead is alleviated by performing the circular matching in CVLAD's frequency …


Passive Visual Analytics Of Social Media Data For Detection Of Unusual Events, Kush Rustagi, Junghoon Chae 2016 Purdue University

Passive Visual Analytics Of Social Media Data For Detection Of Unusual Events, Kush Rustagi, Junghoon Chae

The Summer Undergraduate Research Fellowship (SURF) Symposium

Now that social media sites have gained substantial traction, huge amounts of un-analyzed valuable data are being generated. Posts containing images and text have spatiotemporal data attached as well, having immense value for increasing situational awareness of local events, providing insights for investigations and understanding the extent of incidents, their severity, and consequences, as well as their time-evolving nature. However, the large volume of unstructured social media data hinders exploration and examination. To analyze such social media data, the S.M.A.R.T system provides the analyst with an interactive visual spatiotemporal analysis and spatial decision support environment that assists in evacuation planning …


Haptic Foot Feedback For Kicking Training In Virtual Reality, Hank Huang, Hong Tan 2016 Purdue University

Haptic Foot Feedback For Kicking Training In Virtual Reality, Hank Huang, Hong Tan

The Summer Undergraduate Research Fellowship (SURF) Symposium

As means to further supplement athletic performances increases, virtual reality is becoming helpful to sports in terms of cognitive training such as reaction, mentality, and game strategies. With the aid of haptic feedback, interaction with virtual objects increases by another dimension, in addition to the presence of visual and auditory feedback. This research presents an integrated system of a virtual reality environment, motion tracking system, and a haptic unit designed for the dorsal foot. The prototype simulates a scenario of virtual kicking and returns haptic response upon collision between the user’s foot and virtual object. The overall system was evaluated …


Gdd(Growth Degree Day) Module For Vinsense Visual Analytics System, Pradeep K. Lam, David Ebert , PhD, Jiawei Zhang 2016 Purdue University - West Lafayette

Gdd(Growth Degree Day) Module For Vinsense Visual Analytics System, Pradeep K. Lam, David Ebert , Phd, Jiawei Zhang

The Summer Undergraduate Research Fellowship (SURF) Symposium

Limited resources and increasing costs require vineyards to develop optimized methods of planting, growing, and harvesting crops in order to ensure max yield and stay competitive in the marketplace. Data from sensors planted within the soil paired with weather reports and observation data from farmers could help develop competitive farming strategies. While automatic computation models are usually a black box that cannot explain how the input data are transformed into output, the farmers require an approach that allows them to interactively manipulate and supervise the computation process. The VinSense project was developed for this purpose. In this paper, we focus …


Leveraging Static Analysis Tools For Improving Usability Of Memory Error Sanitization Compilers, Rigel Gjomemo, Phu Huu Phung, Edmund Ballou, Kedar S. Namjoshi, V. N. Venkatakrishnan, Lenore Zuck 2016 University of Illinois at Chicago

Leveraging Static Analysis Tools For Improving Usability Of Memory Error Sanitization Compilers, Rigel Gjomemo, Phu Huu Phung, Edmund Ballou, Kedar S. Namjoshi, V. N. Venkatakrishnan, Lenore Zuck

Computer Science Faculty Publications

Memory errors such as buffer overruns are notorious security vulnerabilities. There has been considerable interest in having a compiler to ensure the safety of compiled code either through static verification or through instrumented runtime checks. While certifying compilation has shown much promise, it has not been practical, leaving code instrumentation as the next best strategy for compilation. We term such compilers Memory Error Sanitization Compilers (MESCs). MESCs are available as part of GCC, LLVM and MSVC suites. Due to practical limitations, MESCs typically apply instrumentation indiscriminately to every memory access, and are consequently prohibitively expensive and practical to only small …


An Extendable Visualization And User Interface Design For Time-Varying Multivariate Geoscience Data, Yanfu Zhou 2016 University of Nebraska-Lincoln

An Extendable Visualization And User Interface Design For Time-Varying Multivariate Geoscience Data, Yanfu Zhou

School of Computing: Dissertations, Theses, and Student Research

Geoscience data has unique and complex data structures, and its visualization has been challenging due to a lack of effective data models and visual representations to tackle the heterogeneity of geoscience data. In today’s big data era, the needs of visualizing geoscience data become urgent, especially driven by its potential value to human societies, such as environmental disaster prediction, urban growth simulation, and so on. In this thesis, I created a novel geoscience data visualization framework and applied interface automata theory to geoscience data visualization tasks. The framework can support heterogeneous geoscience data and facilitate data operations. The interface automata …


Towards Understanding And Developing Virtual Environments To Increase Accessibilities For People With Visual Impairments, Miao Dong 2016 Kennesaw State University

Towards Understanding And Developing Virtual Environments To Increase Accessibilities For People With Visual Impairments, Miao Dong

Master of Science in Computer Science Theses

The primary goal of this research is to investigate the possibilities of utilizing audio feedback to support effective Human-Computer Interaction Virtual Environments (VEs) without visual feedback for people with Visual Impairments. Efforts have been made to apply virtual reality (VR) technology for training and educational applications for diverse population groups, such as children and stroke patients. Those applications had already shown effects of increasing motivations, providing safer training environments and more training opportunities. However, they are all based on visual feedback. With the head related transfer functions (HRTFs), it is possible to design and develop considerably safer, but diversified training …


Automatic Hookworm Detection In Wireless Capsule Endoscopy Images, Xiao WU, Honghan CHEN, Tao GAN, Junzhou CHEN, Chong-wah NGO, Qiang PENG 2016 Singapore Management University

Automatic Hookworm Detection In Wireless Capsule Endoscopy Images, Xiao Wu, Honghan Chen, Tao Gan, Junzhou Chen, Chong-Wah Ngo, Qiang Peng

Research Collection School Of Computing and Information Systems

Wireless capsule endoscopy (WCE) has become a widely used diagnostic technique to examine inflammatory bowel diseases and disorders. As one of the most common human helminths, hookworm is a kind of small tubular structure with grayish white or pinkish semi-transparent body, which is with a number of 600 million people infection around the world. Automatic hookworm detection is a challenging task due to poor quality of images, presence of extraneous matters, complex structure of gastrointestinal, and diverse appearances in terms of color and texture. This is the first few works to comprehensively explore the automatic hookworm detection for WCE images. …


Outlier-Robust Tensor Pca, Pan ZHOU, Jiashi FENG 2016 Singapore Management University

Outlier-Robust Tensor Pca, Pan Zhou, Jiashi Feng

Research Collection School Of Computing and Information Systems

Low-rank tensor analysis is important for various real applications in computer vision. However, existing methods focus on recovering a low-rank tensor contaminated by Gaussian or gross sparse noise and hence cannot effectively handle outliers that are common in practical tensor data. To solve this issue, we propose an outlier-robust tensor principle component analysis (OR-TPCA) method for simultaneous low-rank tensor recovery and outlier detection. For intrinsically low-rank tensor observations with arbitrary outlier corruption, OR-TPCA is the first method that has provable performance guarantee for exactly recovering the tensor subspace and detecting outliers under mild conditions. Since tensor data are naturally high-dimensional …


Cross-Modal Self-Taught Hashing For Large-Scale Image Retrieval, Liang XIE, Lei ZHU, Peng PAN, Yansheng LU 2016 Wuhan University of Technology

Cross-Modal Self-Taught Hashing For Large-Scale Image Retrieval, Liang Xie, Lei Zhu, Peng Pan, Yansheng Lu

Research Collection School Of Computing and Information Systems

Cross-modal hashing integrates the advantages of traditional cross-modal retrieval and hashing, it can solve large-scale cross-modal retrieval effectively and efficiently. However, existing cross-modal hashing methods rely on either labeled training data, or lack semantic analysis. In this paper, we propose Cross-Modal Self-Taught Hashing (CMSTH) for large-scale cross-modal and unimodal image retrieval. CMSTH can effectively capture the semantic correlation from unlabeled training data. Its learning process contains three steps: first we propose Hierarchical Multi-Modal Topic Learning (HMMTL) to detect multi-modal topics with semantic information. Then we use Robust Matrix Factorization (RMF) to transfer the multi-modal topics to hash codes which are …


Spica: Stereographic Projection For Interactive Crystallographic Analysis, Xingzhong Li 2016 University of Nebraska-Lincoln

Spica: Stereographic Projection For Interactive Crystallographic Analysis, Xingzhong Li

Nebraska Center for Materials and Nanoscience: Faculty Publications

In numerous research fields, especially the applications of electron and X-ray diffraction, stereographic projection represents a powerful tool for researchers. SPICA is a new computer program for stereographic projection in interactive crystallographic analysis, which inherits features from the previous JECP/SP and includes more functions for extensive crystallographic analysis. SPICA provides fully interactive options for users to plot stereograms of crystal directions and crystal planes, traces, and Kikuchi maps for an arbitrary crystal structure; it can be used to explore the orientation relationships between two crystalline phases with a composite stereogram; it is also used to predict the tilt angles of …


Hci Testing In Laboratory Or Field Settings, Chuan-Hoo TAN, Austin SILVA, Rich LEE, Kanliang WANG, Fiona Fui-hoon NAH 2016 Singapore Management University

Hci Testing In Laboratory Or Field Settings, Chuan-Hoo Tan, Austin Silva, Rich Lee, Kanliang Wang, Fiona Fui-Hoon Nah

Research Collection School Of Computing and Information Systems

This paper presents perspectives from both academia and practice on how an HCI testing is to be conducted and the deliberations that go into the testing. HCI testing can be conducted in closed-door laboratory or in a field setting. While there is an increased interest in field testing of an HCI artifact, there is always an enduring concern over how to administer a field testing given that the testers will have less control over the course of testing. In this paper, we cover HCI testing deliberation as well as the operational issues of field testing, and conclude the paper with …


The Impact Of Security Cues On User Perceived Security In E-Commerce, Samuel N. SMITH, Fiona Fui-hoon NAH, Maggie X. CHENG 2016 Singapore Management University

The Impact Of Security Cues On User Perceived Security In E-Commerce, Samuel N. Smith, Fiona Fui-Hoon Nah, Maggie X. Cheng

Research Collection School Of Computing and Information Systems

Users are expected to assess the level of security of e-commerce websites before conducting online transactions. In this research, we examine user assessment of security of e-commerce web pages based on cues presented on the web pages. A pilot study was conducted in which each subject assessed six e-commerce web pages with varying cues (i.e., HTTP vs. HTTPS, fraudulent vs. authentic URL, padlocks beside fields), and the findings are reported.


Patient Engagement In The Medical Facility Waiting Room Using Gamified Healthcare Information Delivery, Raheel HASSAN, Nathan W. TWYMAN, Fiona F. NAH, Keng SIAU 2016 Singapore Management University

Patient Engagement In The Medical Facility Waiting Room Using Gamified Healthcare Information Delivery, Raheel Hassan, Nathan W. Twyman, Fiona F. Nah, Keng Siau

Research Collection School Of Computing and Information Systems

This study explores the proposition that medical facility waiting rooms are an opportune setting to engage with and educate patients while they are waiting for care. In collaboration with emergency department (ED) personnel, we developed ER Hero, a tablet-based application for waiting rooms that introduces patients to ED professionals and operations through mini-games and story-like interaction. We evaluated this prototype with human participants to determine how well it performed when compared to paper-based information disclosure presenting the same information. Participants using the application exhibited increased ED knowledge, decreased nervousness, and increased interest. The gamified application outperformed a paper-based approach on …


Data-Driven Synthesis And Evaluation Of Syntactic Facial Expressions In American Sign Language Animation, Hernisa Kacorri 2016 CUNY Graduate Center

Data-Driven Synthesis And Evaluation Of Syntactic Facial Expressions In American Sign Language Animation, Hernisa Kacorri

Dissertations, Theses, and Capstone Projects

Technology to automatically synthesize linguistically accurate and natural-looking animations of American Sign Language (ASL) would make it easier to add ASL content to websites and media, thereby increasing information accessibility for many people who are deaf and have low English literacy skills. State-of-art sign language animation tools focus mostly on accuracy of manual signs rather than on the facial expressions. We are investigating the synthesis of syntactic ASL facial expressions, which are grammatically required and essential to the meaning of sentences. In this thesis, we propose to: (1) explore the methodological aspects of evaluating sign language animations with facial expressions, …


Accelerating Hash Grid And Screen-Space Photon Mapping In 3d Interactive Applications With Opencl, Nikolai Shkurkin 2016 California Polytechnic State University, San Luis Obispo

Accelerating Hash Grid And Screen-Space Photon Mapping In 3d Interactive Applications With Opencl, Nikolai Shkurkin

Computer Science and Software Engineering

Achieving interactive and realistic rendering is only possible with a combination of rendering algorithms, rendering pipelines, multi-core hardware, and parallelization APIs. This project explores and implements two photon mapping pipelines based on the work of Mara et. al [5] and Singh et. al [7] to achieve interactive rendering performance for a set of simple scenes using OpenCL and C++ to work with a GPU. In particular, both a 3D hash grid and a screen-space tiling algorithm are parallelized to accelerate photon lookup in order to compute direct and indirect lighting on visible surfaces in a scene. By using OpenCL with …


Real-Time, Non-Contact Heart Rate Monitor, Daniel Blike 2016 California Polytechnic State University, San Luis Obispo

Real-Time, Non-Contact Heart Rate Monitor, Daniel Blike

Computer Engineering

No abstract provided.


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