Botany Commons^™

Mitochondrial Genome Sequencing And Phylogenetic Analysis Of Cynodon Dactylon × Cynodon Transvaalensis, Shilian Huang, Yancai Shi, Miao Chen

Turkish Journal of Botany

Cynodon dactylon × Cynodon transvaalensis is one of the most important turfgrasses. Sequencing the C. dactylon × C. transvaalensis mitochondrial genome can help us learn more about its genomic composition and allow further study of the population genetics, taxonomy, and evolutionary biology of Poaceae plants and other related species. Here the C. dactylon × C. transvaalensis mitochondrial genome was sequenced using Illumina HiSeq combined with PacBio sequencing technology, and the map of the mitochondrial genome was constructed after de novo assembly and annotation. The C. dactylon × C. transvaalensis mitochondrial genome has 366,612 bp and contains 53 genes, including 31 …

Genetic Diversity Of The Critically Endangered Ferula Sinkiangensis K.M.Shen (Apiaceae) And The Implications For Conservation, Wenjun Li, Zhihao Su, Lei Yang, Qiumei Cao, Ying Feng

Turkish Journal of Botany

Research on the genetic diversity and structures of endangered plant species with small population sizes is a prerequisite for developing reasonable conservation strategies. Ferula sinkiangensis K.M.Shen is a critically endangered herbaceous perennial and monocarpic medical plant growing in semiarid steppe ecosystems with a small population size within the Yili Valley in Xinjiang, China. Unfortunately, the lack of genetic information has limited our ability to initiate effective conservation strategies for the species. In this study, 14 polymorphic microsatellite primers of F. sinkiangensis were developed and characterized using Illumina HiSeq paired-end reads from genomic DNA. Primers were used to assess the genetic …

Termitomyces Sheikhupurensis Sp. Nov. (Lyophyllaceae, Agaricales) From Pakistan, Evidence From Morphology And Dna Sequences Data, Aiman Izhar, Abdul Nasir Khalid, Hira Bashir

Turkish Journal of Botany

A new symbiotic species from genus Termitomyces, is proposed here supported by morphological features and molecular evidence. The species is characterized by an annual growth, pileus with velar remnants, ruptured margins, pubescent stipe with short pseudorhiza, basidia varying in wall thickness, polymorphic cheilo- and pleurocystidia as well as two types of pileipellis hyphae. Sequences of nr ITS and LSU regions of newly reported species nested as a separate taxon in both phylogenetic analyses of current study.

Phylogenetic And Biogeographical History Confirm The Anatolian Origin Of Bornmuellera (Brassicaceae) And Clade Divergence Between Anatolia And The Balkans In The Plio-Pleistocene Transition, Bariş Özüdoğru, Klaus Mummenhoff

Turkish Journal of Botany

Understanding disjunct distribution patterns in the Balkan Peninsula and Anatolia is important in order to reconstruct robust biogeographical hypotheses. This is instrumental in understanding the recolonization patterns of Europe during the Quaternary glaciation/interglaciation periods and the potential role of Anatolia as a refugium. Unfortunately, only a few studies have been conducted to uncover such processes. Here, we used all eight species of the genus Bornmuellera (Brassicaceae) with a scattered distribution in the Balkans and Anatolia to reconstruct its biogeographic history. We applied nuclear internal transcribed spacer (ITS) and plastid trnL-F regions and showed that 1) Bornmuellera is monophyletic and, 2) …

Improving The Biological Control Of Persicaria Perfoliata (Polygonaceae) Using Rhinoncomimus Latipes Korotyaev (Coleoptera: Curculionidae), Jaewon Kim

Graduate Theses, Dissertations, and Problem Reports (ETD)

Persicaria perfoliata (L.) H. Gross (Polygonaceae; Mile-a-minute weed) is a rapid-growing invasive vine introduced from eastern Asia to northeastern United States in the 1930s. This vine has been invaded in disturbed areas and reforestation sites in 15 states in the U.S. and forms dense, monocultural patches that may inhibit natural forest regeneration. To control this weed, a host-specific biocontrol agent, Rhinoncomimus latipes Korotyaev (Coleoptera: Curculionidae) has been released in the P. perfoliata invaded states in the U.S. during the past 15 years. Currently, R. latipes is released by hand to the invaded area where the presence of the weed is …

Arthropod Resistant Tomatoes: Screening Tools, Yield And Nutritional Quality Of Interspecific Hybrids, Mohammad Hasan Salman Ali Dawood

Theses and Dissertations--Plant and Soil Sciences

Tomato (Solanum lycopersicum) is one of the most economically important vegetable crops grown around globe but is a host for numerous pests and pathogens. In the future, tomato breeders will have to focus on increasing fruit quantity and on enhancing pest resistance. Many accessions of the wild relative of tomato, S. habrochaites display high levels of resistance towards arthropods such as spider mites. The presence of the sesquiterpene hydrocarbon, 7-epi-zingiberene, found in S. habrochaites type IV trichomes has been associated with arthropod resistance. However, the presence of other compounds in its trichome secretions may also be related …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Plant-Pollinator Associations In An Eastern Serpentine Savannah And The Effects Of Overbrowsing, Allyson Richins

Theses and Dissertations

Chapter 1: Native plant response to deer overbrowsing in a serpentine savannah

Plants are particularly vulnerable to physical disturbance in low productivity areas, due to a high cost of replacing lost plant tissue. In the eastern United States, serpentine grasslands are fragmented ecosystems with high concentrations of rare endemic plant species, low concentrations of soil nutrients, and uncontrolled deer overpopulation. This study assessed functional responses of native angiosperms in a rare eastern serpentine savannah to selective deer browsing. Plant count, flower count, floral area, vegetative area, and plant height of 10 serpentine plant species were compared inside and outside of …

Allelic Variation In Rice Fertilization Independent Endosperm 1 Contributes To Grain Width Under High Night Temperature Stress, Balpreet K. Dhatt, Puneet Paul, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Feiyu Zhu, Maria Arlene Adviento-Borbe, Argelia Lorence, Paul Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

A higher minimum (night-time) temperature is considered a greater limiting factor for reduced rice yield than a similar increase in maximum (daytime) temperature. While the physiological impact of high night temperature (HNT) has been studied, the genetic and molecular basis of HNT stress response remains unexplored.

We examined the phenotypic variation for mature grain size (length and width) in a diverse set of rice accessions under HNT stress. Genome-wide association analysis identified several HNT-specific loci regulating grain size as well as loci that are common for optimal and HNT stress conditions.

A novel locus contributing to grain width under HNT …

Voxel Carving-Based 3d Reconstruction Of Sorghum Identifies Genetic Determinants Of Light Interception Efficiency, Mathieu Gaillard, Chenyong Miao, James Schnable, Bedrich Benes

Department of Agronomy and Horticulture: Faculty Publications

Changes in canopy architecture traits have been shown to contribute to yield increases. Optimizing both light interception and light interception efficiency of agricultural crop canopies will be essential to meeting the growing food needs. Canopy architecture is inherently three-dimensional (3D), but many approaches to measuring canopy architecture component traits treat the canopy as a two-dimensional (2D) structure to make large scale measurement, selective breeding, and gene identification logistically feasible. We develop a high throughput voxel carving strategy to reconstruct 3D representations of sorghum from a small number of RGB photos. Our approach builds on the voxel carving algorithm to allow …

Genome-Wide Identification And Analysis Of Heterotic Loci In Three Maize Hybrids, Hongjun Liu, Qin Wang, Mengjiao Chen, Yahui Ding, Xuerong Yang, Jie Liu, Xiaohan Li, Congcong Zhou, Qilin Tian, Yiqi Lu, Danlin Fan, Junpeng Shi, Lin Zhang, Congbin Kang, Mingfei Mingfei Sun, Fangyuan Li, Yujian Wu, Yongzhong Zhang, Baoshen Liu, Xiang Yu Zhao, Qi Feng, Jinliang Yang, Bin Han, Jinsheng Lai, Xian Sheng Zhang, Xuehui Huang

Department of Agronomy and Horticulture: Faculty Publications

Heterosis, or hybrid vigour, is a predominant phenomenon in plant genetics, serving as the basis of crop hybrid breeding, but the causative loci and genes underlying heterosis remain unclear in many crops. Here, we present a large-scale genetic analysis using 5360 offsprings from three elite maize hybrids, which identifies 628 loci underlying 19 yield-related traits with relatively high mapping resolutions. Heterotic pattern investigations of the 628 loci show that numerous loci, mostly with complete–incomplete dominance (the major one) or overdominance effects (the secondary one) for heterozygous genotypes and nearly equal proportion of advantageous alleles from both parental lines, are the …

Interspecific Gene Flow Potentiates Adaptive Evolution In A Hybrid Zone Formed Between Pinus Strobiformis And Pinus Flexilis, Mitra Menon

Theses and Dissertations

Species range margins are often characterised by high degrees of habitat fragmentation resulting in low genetic diversity and higher gene flow from populations at the core of the species range. Interspecific gene flow from a closely related species with abutting range margins can increase standing genetic diversity and generate novel allelic combinations thereby alleviating limits to adaptive evolution in range margin populations. Hybridization driven interspecific gene flow has played a key role in the demographic history of several conifer due to their life history characteristics such as weak crossability barriers and long generation times. Nevertheless, demonstrating whether introgression is adaptive …

Effects Of Environmental Heterogeneity And Temporal Variation On Ecological Relationships Of Vegetation In A Seasonally Dry Tropical Forest In Brazil, Alisson Borges Miranda Santos, Nathalle Cristine Alencar Fagundes, Cleber Rodrigo Souza, Vinicius Andrade Maia, Wilder Bento Da Silva, Gabriela Gomes Pires De Paula, Felipe De Carvalho Araujo, Polyanne Coelho, Natália Aguiar-Campos, Diego Teixeira Girardelli, Jean Daniel Morel, Rubens Manoel Dos Santos

Turkish Journal of Botany

Species distribution patterns, community structure, and dynamics are determined on a small scale by soil and habitat heterogeneity. The aim of this work is to evaluate the temporal changes in composition and structure of a tree community, revealing the ecological drivers of the observed vegetation patterns. For 16 years (2000, 2005, 2010, and 2016) we monitored the temporal variations in structure and floristic composition of a semideciduous seasonal forest through 20 × 20 m2 (400 m2) plots, totaling 2.08 ha of sampled area encompassing Cambisol (0.4 ha), Oxysol (1.12 ha), and Nitosol (0.56 ha) soil classes. These tree communities were …

Enhanced Stress Tolerance In Transformed Ajuga Bracteosa Wall. Ex Benth. Regenerants By Upregulated Gene Expression Of Metabolic Pathways, Samina Rubnawaz, Waqas Kayani, Rashid Mahmood, Bushra Mirza

Turkish Journal of Botany

The rol oncogenes of Agrobacterium rhizogenes enhance the production of medicinally important compounds in plants and provide a first barrier against the overproduction of reactive oxygen species during biotic and abiotic stress. This study was designed to evaluate the expression of genes involved in biosynthetic pathways and their impact on metabolic contents and environmental stress tolerance in regenerated Ajuga bracteosa Wall. ex Benth. After successful transformation, real-time quantitative PCR confirmed the increased expression (1.94-6.59-fold) of HMGR, HDS, FDS, PAL, and TTG1 genes in transgenic lines. Furthermore, GC-MS coupled with principal component analysis revealed diverse concentrations of 97 metabolites in A. …

Genome Size Confirms The Presence Of Artemisia Verlotiorum (Asteraceae) In Lebanon, Filip Verloove, Attila Mesterházy, Marc El Beyrouthy, Ben Zonneveld

Turkish Journal of Botany

The Far Eastern weed Artemisia verlotiorum was formerly reported from Lebanon. However, for a number of reasons this record was questionable. In 2019, the genuine presence of this species was confirmed based on macromorphology and strengthened by assessing the somatic nuclear DNA content (genome size or 2C-value) of the Lebanese populations.

Wood Frogs (Rana Sylvatica) In Southwestern Roberts County And Western Grant County, South Dakota, Dennis R. Skadsen, Drew R. Davis

The Prairie Naturalist

Historically, only six records of Wood Frogs (Rana sylvatica) existed from South Dakota, all represented by museum specimens. A single specimen was collected from Hartford Beach on Big Stone Lake, Roberts County in 1922 (National Museum of Natural History, Smithsonian Institution [USNM] 65452) and five Wood Frogs were collected near the outlet of Blue Dog Lake, Day County in 1929 (USNM 312618– 312622; Fig. 1). After the 1920s, no other Wood Frogs were reported in South Dakota for the next six decades, and the species was presumed extirpated. Over (1923, 1943) reported the species was common in the …

Trends In A Greater Prairie Chicken Population Established By Translocation In North Dakota, Gary Huschle, John E. Toepfer

The Prairie Naturalist

In 1992, an effort was undertaken by the North Dakota Game and Fish Department (NDGFD), U.S. Fish and Wildlife Service, and North Dakota Chapter of the Wildlife Society to reestablish a viable population of greater prairie chickens (Tympanuchus cupido pinnatus; hereafter prairie chickens) in northeast North Dakota. The release area was centered on the Prairie Chicken Wildlife Management Area located 22.5 km northwest of Grand Forks, North Dakota, in the northern part of Grand Forks County. Topography consists of poorly drained, saline flats and swells separated by poorly drained swales and sloughs in the Red River Valley (Beringer 1995). Permanent …

ผลของฤดูกาลต่อการเติบโตและประสิทธิภาพของการดูดซึมกลับของไนโตรเจนและฟอสฟอรัสของแสมขาว Avicennia Alba Blume ในป่าชายเลน ปากแม่น้ำตราด, ปิยะพล แก่นคง

Chulalongkorn University Theses and Dissertations (Chula ETD)

ป่าชายเลนมีบทบาทสำคัญในการเป็นแหล่งสะสมคาร์บอนเนื่องจากเป็นระบบนิเวศที่มีผลผลิตขั้นปฐมภูมิสุทธิ (net primary production; NPP) สูง แม้ว่าต้นไม้ในป่าชายเลนจะเจริญอยู่ในสภาพแวดล้อมที่ดินมีความเค็มสูง อีกทั้งยังมีปริมาณออกซิเจนในดินค่อนข้างจำกัด เนื่องจากได้รับผลกระทบจากการขึ้นลงของน้ำทะเล ระดับน้ำทะเลทั่วโลกมีแนวโน้มเพิ่มสูงขึ้นเนื่องจากการเปลี่ยนแปลงสภาพภูมิอากาศโลก ส่งผลทำให้ความเค็มและปริมาณสารอาหารในป่าชายเลนเปลี่ยนแปลงไป ซึ่งอาจส่งผลกระทบต่อการเติบโตของต้นไม้ป่าชายเลน การศึกษาครั้งนี้จึงมีวัตถุประสงค์เพื่อศึกษาการเติบโตด้านการขยายพื้นที่หน้าตัดลำต้น และการผลิและร่วงของใบ รวมถึงศึกษาการดูดซึมกลับของสารอาหารในใบของแสมขาว (Avicennia alba) ในช่วงฤดูฝนและฤดูแล้ง ตั้งแต่เดือนกรกฎาคม พ.ศ. 2562 ถึงมิถุนายน พ.ศ. 2563 โดยมีพื้นที่ศึกษาอยู่ในป่าชายเลนรุ่นสองบริเวณปากแม่น้ำตราด ผลการศึกษาพบว่าการขยายพื้นที่หน้าตัดลำต้นและการผลิใบมีความผันแปรตามฤดูกาล โดยพบว่ามีอัตราที่สูงขึ้นในช่วงฤดูฝนจากนั้นจึงลดลงในช่วงฤดูแล้ง เนื่องจากปริมาณน้ำฝนที่มากในช่วงฤดูฝนส่งผลให้ความเค็มของน้ำลดลง อีกทั้งไนโตรเจนในน้ำยังมีแนวโน้มเพิ่มขึ้น จึงทำให้ A. alba ได้รับน้ำจืดและไนโตรเจนผ่านการดูดซึมของรากสำหรับการเติบโตมากขึ้น นอกจากนี้ยังพบว่าประสิทธิภาพการดูดซึมกลับของฟอสฟอรัส (phosphorus resorption efficiency; PRE) ในใบมีค่าสูงในช่วงฤดูฝน จึงทำให้มีสารอาหารสำหรับการเติบโตเพิ่มมากขึ้น และส่งผลให้มีการเติบโตทั้งในด้านการขยายพื้นที่หน้าตัดลำต้นและการผลิใบที่มากขึ้นในช่วงฤดูฝน แสดงให้เห็นว่า A. alba มีกลยุทธ์ในการปรับตัวเพื่อให้เติบโตอยู่ได้ภายใต้สภาพแวดล้อมที่มีความผันแปรของความเค็มและสารอาหารตามฤดูกาล โดยมีอัตราการเติบโตสูงในช่วงที่ความเค็มลดลง อีกทั้งยังเพิ่มการหมุนเวียนสารอาหารจากใบกลับมาใช้ใหม่มากขึ้นเพื่อตอบสนองต่อการเติบโตที่สูงในช่วงฤดูฝน ซึ่งกลยุทธ์การเติบโตนี้เป็นส่วนสำคัญที่ทำให้ระบบนิเวศป่าชายเลนยังคงทำหน้าที่เป็นแหล่งสะสมคาร์บอนที่สำคัญของโลกต่อไป

Exploring The Origins Of Secondary Growth – Two Lower Devonian (Emsian) Euphyllophytes From Gaspé, Canada, And Their Implications For The Evolution Of Secondary Growth, Kelly C. Pfeiler

Cal Poly Humboldt theses and projects

Secondary growth from a vascular cambium has a deep fossil record among euphyllophytes, with the earliest occurrence dated to 407 Ma. To date, Armoricaphyton and Franhueberia represent the only instances of secondary growth formally documented in the Early Devonian. Secondary growth diversified rapidly and was present in all major euphyllophyte lineages by the Middle Devonian. Here, I describe two new Early Devonian euphyllophytes exhibiting secondary growth, from the Emsian (c. 400-395 Ma) Battery Point Formation (Québec, Canada): Gmujij tetraxylopteroides gen. et sp. nov. and Perplexa praestigians gen et sp. nov. Both these plants possess mesarch actinosteles with Psilophyton-type …