Botany Commons^™

Gwas: Fast-Forwarding Gene Identification And Characterization In Temperate Cereals: Lessons From Barley – A Review, Ahmad M. Alqudah, Ahmed Sallam, P. Stephen Baenziger, Andreas Börner

Department of Agronomy and Horticulture: Faculty Publications

Understanding the genetic complexity of traits is an important objective of small grain temperate cereals yield and adaptation improvements. Bi-parental quantitative trait loci (QTL) linkage mapping is a pow- erful method to identify genetic regions that co-segregate in the trait of interest within the research pop- ulation. However, recently, association or linkage disequilibrium (LD) mapping using a genome-wide association study (GWAS) became an approach for unraveling the molecular genetic basis underlying the natural phenotypic variation. Many causative allele(s)/loci have been identified using the power of this approach which had not been detected in QTL mapping populations. In barley (Hordeum …

Soil Carbon Increased By Twice The Amount Of Biochar Carbon Applied After 6 Years: Field Evidence Of Negative Priming, Humberto Blanco-Canqui, David A. Laird, Emily A. Heaton, Samuel Rathke, Bharat Sharma Acharya

Department of Agronomy and Horticulture: Faculty Publications

Applying biochar to agricultural soils has been proposed as a means of sequester-ing carbon (C) while simultaneously enhancing soil health and agricultural sustain-ability. However, our understanding of the long-term effects of biochar and annual versus perennial cropping systems and their interactions on soil properties under field conditions is limited. We quantified changes in soil C concentration and stocks, and other soil properties 6 years after biochar applications to corn (Zea mays L.) and dedicated bioenergy crops on a Midwestern US soil. Treatments were as fol-lows: no-till continuous corn, Liberty switchgrass (Panicum virgatum L.), and low-diversity prairie grasses, 45% big bluestem …

Transforming Unmanned Aerial Vehicle (Uav) And Multispectral Sensor Into A Practical Decision Support System For Precision Nitrogen Management In Corn, Laura J. Thompson, Laila A. Puntel

Department of Agronomy and Horticulture: Faculty Publications

Determining the optimal nitrogen (N) rate in corn remains a critical issue, mainly due to unaccounted spatial (e.g., soil properties) and temporal (e.g., weather) variability. Unmanned aerial vehicles (UAVs) equipped with multispectral sensors may provide opportunities to improve N management by the timely informing of spatially variable, in-season N applications. Here, we developed a practical decision support system (DSS) to translate spatial field characteristics and normalized difference red edge (NDRE) values into an in-season N application recommendation. On-farm strip-trials were established at three sites over two years to compare farmer’s traditional N management to a split-application N management guided by …

Benchmarking Impact Of Nitrogen Inputs On Grain Yield And Environmental Performance Of Producer Fields In The Western Us Corn Belt, Fatima A.M. Tenorio, Eileen L. Mclellan, Alison J. Eagle, Kenneth G. Cassman, Daryl Andersen, Marie Krausnick, Russell Oaklund, John Thorburn, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Benchmarking crop yields against nitrogen (N) input levels can help provide opportunities to improve N ferti-lizer efficiency and reduce N losses on maize in the US Corn Belt by identifying fields most likely to benefit from improved N management practices. Here, we evaluated a large producer database that includes field-level data on yield and applied N inputs from 9280 irrigated and rainfed fields over a 7-year period (2009–2015) in Nebraska (USA). A spatial framework, based on technology extrapolation domains, was used to cluster each field into spatial units with similar climate and soil type that represent 1.3 million ha of …

Prediction Strategies For Leveraging Information Of Associated Traits Under Single- And Multi-Trait Approaches In Soybeans, Reyna Persa, Arthur Bernardeli, Diego Jarquin

Department of Agronomy and Horticulture: Faculty Publications

The availability of molecular markers has revolutionized conventional ways to improve genotypes in plant and animal breeding through genome-based predictions. Several models and methods have been developed to leverage the genomic information in the prediction context to allow more efficient ways to screen and select superior genotypes. In plant breeding, usually, grain yield (yield) is the main trait to drive the selection of superior genotypes; however, in many cases, the information of associated traits is also routinely collected and it can potentially be used to enhance the selection. In this research, we considered different prediction strategies to leverage the information …

Overexpression Of Ferulate 5‑Hydroxylase Increases Syringyl Units In Sorghum Bicolor, Hannah M. Tetreault, Tammy Gries, Nathan Palmer, Deanna L. Funnell-Harris, Shirley Sato, Zhengxiang Ge, Gautam Sarath, Scott Sattler

Department of Agronomy and Horticulture: Faculty Publications

Ferulate 5-hydroxylase (F5H) of the monolignol pathway catalyzes the hydroxylation of coniferyl alcohol, coniferaldehyde and ferulic acid to produce 5-hydroxyconiferyl moieties, which lead to the formation of sinapic acid and syringyl (S) lignin monomers. In contrast, guaiacyl (G) lignin, the other major type of lignin monomer, is derived from polymerization of coniferyl alcohol. In this study, the effects of manipulating S-lignin biosynthesis in sorghum (Sorghum bicolor) were evaluated. Overexpression of sorghum F5H (SbF5H), under the control of the CaMV 35S promoter, increased both S-lignin levels and the ratio of S/G lignin, while plant growth and development …

Biological And Cellular Functions Of The Microdomain-Associated Fwl/Cnr Protein Family In Plants, Sandra Thibivilliers, Andrew Farmer, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Membrane microdomains/nanodomains are sub-compartments of the plasma membrane enriched in sphingolipids and characterized by their unique protein composition. They play important roles in regulating plant development and plant-microbe interactions including mutualistic symbiotic interactions. Several protein families are associated with the microdomain fraction of biological membranes such as flotillins, prohibitins, and remorins. More recently, GmFWL1, a FWL/CNR protein exclusively expressed in the soybean nodule, was functionally characterized as a new microdomain-associated protein. Interestingly, GmFWL1 is homologous to the tomato FW2-2 protein, a major regulator of tomato fruit development. In this review, we summarize the knowledge gained about the biological, cellular, and …

Investigation Of Heat-Induced Changes In The Grain Yield And Grains Metabolites, With Molecular Insights On The Candidate Genes In Barley, Mona F.A. Dawood, Yasser S. Moursi, Ahmed Amro, P. Stephen Baenziger, Ahmed Sallam

Department of Agronomy and Horticulture: Faculty Publications

Heat stress is one of the abiotic stresses that cause a significant reduction in barley yield. Climate change will increase the number of heatwaves, which will result in more deterioration in the agricultural sector. Therefore, understanding the physiological changes that occur in the plant to tolerate heat stress is very important. A collection of 60 Egyptian spring barley genotypes has been tested for heat stress under field conditions. To quantify the changes in yield-related traits and the grain-reserve parameters as indicators for heat tolerance, several traits were scored. The causative genes that regulate the variation of all traits of interest …

Soil Sample Timing, Nitrogen Fertilization, And Incubation Length Influence Anaerobic Potentially Mineralizable Nitrogen, Jason Clark, Kristen S. Veum, Fabián G. Fernández, Newell R. Kitchen, James J. Camberato, Paul Carter, Richard Ferguson, David W. Franzen, Daniel E. Kaiser, Carrie A. M. Laboski, Emerson Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Understanding the variables that affect the anaerobic potentially mineralizable N (PMNan) test should lead to a standard procedure of sample collection and incubation length, improving PMNan as a tool in corn (Zea mays L.) N management. We evaluated the effect of soil sample timing (preplant and V5 corn development stage [V5]), N fertilization (0 and 180 kg ha−1) and incubation length (7, 14, and 28 d) on PMNan (0–30 cm) across a range of soil properties and weather conditions. Soil sample timing, N fertilization, and incubation length affected PMNan differently based on soil and weather conditions. Preplant vs. V5 PMNan …

Weather And Soil In The Us Midwest Influence The Effectiveness Of Single- And Split-Nitrogen Applications In Corn Production, Jason D. Clark, Fabián G. Fernández, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Newell R. Kitchen, Carrie A. M. Laboski, Emerson Nafziger, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Splitting the N application into two or more timings may improve corn (Zea mays L.) grain yield and N recovery relative to a single-N application. A 49 site-year study across eight U.S. Midwestern states compared the effect of an at-planting (single-N application) and two split-N applications [45 (45+SD) or 90 kg N ha−1 (90+SD) at planting with the remainder of the total rate (180 or 270 kg N ha−1) applied at V9]. For split-N applications, soil and plant responses were similar between 45+SD and 90+SD 93–98% of the time, indicating the at-planting N rate of 45 kg N ha−1 may …

Organic Fertilizer Abrasive Grits Increase Soil Available Nitrogen, Plant Height, And Biomass, Michael Carlson, Frank Forcella, Samuel E. Wortman, David Clay, Sharon A. Clay

Department of Agronomy and Horticulture: Faculty Publications

In organic cropping systems, air-propelled abrasive grits can be used to control in-row weeds. If the applied abrasive grit is an approved organic fertilizer, these applications may serve a dual purpose of weed control and crop fertility. Laboratory soil incubations examined the N mineralization rates of several grit types with differing C/N ratios (Agra Grit [crushed walnut shells, 170:1], corncob grit [91:1], Sustane [composted turkey litter, 5.0:1], Phytaboost Plant Food [crushed and pelletized soybean meal, 5.0:1]). A greenhouse study determined plant wheat (Triticum aestivum L.), kale (Brassica napus pabluaria DC), and velvetleaf (Abu- tilon theophrasti Medik.) growth response in soils …

Does Cover Crop Grazing Damage Soils And Reduce Crop Yields?, Humberto Blanco-Canqui, Mary E. Drewnoski, Jim C. Macdonald, Daren Redfearn, Jay Parsons, Gary W. Lesoing, Tyler Williams

Department of Agronomy and Horticulture: Faculty Publications

Cover crop (CC) grazing can be a potential strategy to support livestock and crop production while enhancing soil ecosystem services, but research on this potential multi-functionality of CCs is limited. We assessed 3-yr cereal rye (Secale cereale L.) CC grazing impacts on soil compaction, structure, water infiltration, fertility, and crop yields on an on-farm irrigated strip-till continuous corn (Zea mays L.) silage experiment on a sandy loam with <1% slope in west-central Nebraska. Treatments were: (a) non-grazed CC, (b) grazed CC, and (c) no CC. Across the 3 yr, cattle grazed CCs at 5.9 AUM ha−1 with grazing occurring over a 4-mo period during winter and/or spring, depending on the year. We measured soil properties within 5 d after grazing ended in spring before tilling and plant- ing corn. Cattle grazing resulted in a 92% decrease of CC biomass, compared with non-grazed CCs. Grazing did not affect soil penetration resistance (com- paction parameter), bulk density, aggregate stability, pH, and concentration of organic matter and nutrients except in the 2nd yr where it reduced cumulative infiltration by 80% and increased penetration resistance from 1.23 to 1.72 MPa but such increase was below root growth thresholds (<2 MPa). Cover crop grazing had no negative effect on corn silage yields although data were variable. Overall, CC grazing for 3 yr had small and variable effects on soils and crop yields, indi- cating that it can be a management option to support livestock production but more long-term data from different tillage and cropping systems, and climates are needed to further understand CC grazing implications.

A Systematic Review Of Durum Wheat: Enhancing Production Systems By Exploring Genotype, Environment, And Management (G × E × M) Synergies, Brian L. Beres, Elham Rahmani, John M. Clarke, Patricio Grassini, Curtis J. Pozniak, Cameron Guy Robinson Geddes, Kenton D. Porker, William E. May, Joel Ransom

Department of Agronomy and Horticulture: Faculty Publications

According to the UN-FAO, agricultural production must increase by 50% by 2050 to meet global demand for food. This goal can be accomplished, in part, by the development of improved cultivars coupled with modern best management practices. Overall, wheat production on farms will have to increase significantly to meet future demand, and in the face of a changing climate that poses risk to even current rates of production. Durum wheat [Triticum turgidum L. ssp. durum (Desf.)] is used largely for pasta, couscous and bulgur production. Durum producers face a range of factors spanning abiotic (frost damage, drought, and sprouting) and …

Training For Specialists Vs. Education For Agroecologists, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

I admit to being a slow learner. Graduate school training in agronomy at the University of California, Davis and in plant breeding at Cornell University provided me with top-quality opportunities to acquire the tools for crop improvement, plus the contacts to join professionals at the International Center for Tropical Agriculture in Colombia. As a young scientist dedicated to building on successes of the Green Revolution, I was convinced that genetic changes would solve global hunger. This had been amply demonstrated with the yield increases of wheat in Mexico and India, and with rice in Southeast Asia. Should this success not …

Validation Of Predictive Empirical Weed Emergence Models Of Abutilon Theophrasti Medik Based On Intercontinental Data, Valle Egea-Cobrero, Kevin Bradley, Isabel M. Calha, Adam S. Davis, Jose Dorado, Frank Forcella, John L. Lindquist, Christy L. Sprague, Jose L. Gonzalez-Andujar

Department of Agronomy and Horticulture: Faculty Publications

Good weed management relies on the proper timing of weed control practices in relation to weed emergence dynamics. Therefore, the development of models that predict the timing of emergence may help provide growers with tools to make better weed management decisions. The aim of this study was to validate and compare two previously published predictive empirical thermal time models of the emergence of Abutilon theophrasti growing in maize with data sets from the USA and Europe, and test the hypothesis that a robust and general weed emergence model can be developed for this species. Previously developed Weibull and Logistic models …

Quantifying On‐Farm Nitrous Oxide Emission Reductions In Food Supply Chains, A.J. Eagle, E. Mclellan, E.M. Brawner, M.H. Chantigny, Eric A. Davidson, J.B. Dickey, Bruce A. Linquist, T.M. Maaz, D.E. Pelster, Cameron M. Pittelkow, C. Van Kessel, T.J. Vyn, K. G. Cassman

Department of Agronomy and Horticulture: Faculty Publications

Reducing nitrous oxide (N2O) emissions from agriculture is critical to limiting future global warming. In response, a growing number of food retailers and manufacturers have committed to reducing N2O emissions from their vast networks of farmer suppliers by providing technical assistance and financial incentives. A key challenge for such companies is demonstrating that their efforts are leading to meaningful progress toward their climate mitigation commitments. We show that a simplified version of soil surface nitrogen (N) balance—or partial N balance—the difference between N inputs to and outputs

from a farm field (fertilizer N minus crop N), is a robust indicator …

Cover Crops And Weed Suppression In The U.S. Midwest: A Meta-Analysis And Modeling Study, Virginia Nicholas, Rafael Martinez-Feria, David Weisberger, Sarah Carlson, B. Basso, Andrea Basche

Department of Agronomy and Horticulture: Faculty Publications

In addition to soil health and conservation benefits, cover crops (CCs) may offer weed control in the midwestern United States, but individual studies report vary- ing effects. We conducted a meta-analysis of studies measuring weed biomass (WBIO) or density (WDEN) in paired CC and no-cover treatments in corn (Zea mays L.)–soybean [Glycine max (L.) Merr] rotations in the U.S. Midwest. Fifteen studies provided 123 paired comparisons of WBIO and 119 of WDEN. Only grass CCs significantly reduced WBIO, while no CC reduced WDEN. We found no evidence CC management factors (e.g., termination method) directly affected out- comes. Our dataset showed …

Solar Dimming Decreased Maize Yield Potential On The North China Plain, Qingfeng Meng, Baohua Liu, Haishun Yang, Xinping Chen

Department of Agronomy and Horticulture: Faculty Publications

Solar dimming has been increasing in rapidly developing regions (China and India) and threatening food security. Although previous studies have summarized the ef- fects of climate change-associated increases in temperature on agriculture, few have examined the effects due to solar dimming. Here, we analyzed the effects of solar dimming on maize on the North China Plain (NCP). It is reported that solar dimming intensified and maize yield potential decreased since the 1960s. The total decrease in solar radiation for the whole maize growing season of this period was 17%, and solar dimming explained 87% of the decrease in yield potential. …

Management Strategies For Early- And Late-Planted Soybean In The North-Central United States, Emma G. Matcham, Spyridon Mourtzinis, Shawn P. Colney, Juan I. Rattalino Edreira, Patricio Grassini, Adam C. Roth, Shaun N. Casteel, Igancio A. Ciampitti, Hans J. Kandel, Peter M. Kyveryga, Mark A. Licht, Daren S. Mueller, Emerson Nafziger, Seth Naeve, Jordan D. Stanley, Michael J. Staton, Laura E. Lindsey

Department of Agronomy and Horticulture: Faculty Publications

It is widely recognized that planting soybean [Glycine max (L.) Merr.] early is critical to maximizing yield, but the influence of changing management factors when soybean planting is delayed is not well understood. The objectives of this research were to (a) identify management decisions that increase seed yield in either early- or late-planted soybean scenarios, and (b) estimate the maximum break-even price of each management factor identified to influence soybean seed yield in early- or late-planted soybean. Producer data on seed yield and management decisions were collected from 5682 fields planted with soybean during 2014−2016 and grouped into 10 technology …

Calibrating Soybean Parameters In Jules 5.0 From The Us-Ne2/3 Fluxnet Sites And The Soyface-O3 Experiment, Felix Leung, Karina Williams, Stephen Sitch, Amos P.K. Tai, Andy Wiltshire, Jemma Gornall, Elizabeth A. Ainsworth, Timothy J. Arkebauer, David Scoby

Department of Agronomy and Horticulture: Faculty Publications

Abstract. Tropospheric ozone (O3) is the third most important anthropogenic greenhouse gas. O3 is detrimental to plant productivity, and it has a significant impact on crop yield. Currently, the Joint UK Land Environment Simula- tor (JULES) land surface model includes a representation of global crops (JULES-crop) but does not have crop-specific O3 damage parameters and applies default C3 grass O3 pa- rameters for soybean that underestimate O3 damage. Physiological parameters for O3 damage in soybean in JULES- crop were calibrated against leaf gas-exchange measure- ments from the Soybean Free Air Concentration Enrichment (SoyFACE) with O3 experiment in Illinois, USA. Other …