Botany Commons^™

Genome-Wide Identification And Evolutionary Analysis Of Cngc Gene Families In Sixteen Brassicaceae Plant Genomes, Akram Ali Baloch, Kaleem U. Kakar, Asma Abro, Muhammad Mushtaq, Zarqa Nawaz, Abrar Hussain

Turkish Journal of Botany

Cyclic nucleotide-gated channels (CNGCs) are ligand-gated calcium signaling channels, play vital biological functions. Nonetheless, the CNGC gene families have not been well studied in Brassicaceae which includes commercially important and evolutionary model crops. Here, using in silico approaches, we recognized 414 CNGC genes in sixteen sequenced genomes of Brassicaceae species, which represent 10 genera of 8 tribes, ranging between 10-51 genes. These CNGCs can be classified into four main groups (I-IV) and two subgroups (IV-A and IV-B), of which, Group-II CNGC is the oldest that has gradually disappeared from the Arabis alpina L. genome. These results present a comprehensive overview …

Ecological Intensification With Soil Health Practices Demonstrates Positive Impacts On Multiple Soil Properties: A Large-Scale Farmer-Led Experiment, Fernanda Souza Krupek, Daren D. Redfearn, Kent M. Eskridge, Andrea Basche

Department of Agronomy and Horticulture: Faculty Publications

Improving soil health is critical to reversing trends of soil degradation and is of increasing interest to a range of stakeholders including policymakers, agricultural industry leaders, food companies, and farmers. Crop and soil management practices focused on ecological functions can be effective in restoring fundamental biological, chemical and physical soil properties. The call for ecological intensification of agricultural systems has the potential to improve soil health and input-use efficiency. In this study, we developed a framework to classify spatial and temporal ecological intensification with soil health practices: tillage, crop rotation, cover crop, organic amendment, and crop-livestock integration. We applied this …

Getting To The Root Cause: The Genetic Underpinnings Of Root System Architecture And Rhizodeposition In Sorghum, Farren Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Plants are some of the most diverse organisms on earth, consisting of more than 350,000 different species. To understand the underlying processes that contributed to plant diversification, it is fundamental to identify the genetic and genomic components that facilitated various adaptations over evolutionary history. Most studies to date have focused on the underlying controls of above-ground traits such as grain and vegetation; however, little is known about the “hidden half” of plants. Root systems comprise half of the total plant structure and provide vital functions such as anchorage, resource acquisition, and storage of energy reserves. The execution of these key …

Potential Effects Of Amynthas Agrestis Invasion On Woody Understory Flora In The Cvnp, Christian Mammana

Williams Honors College, Honors Research Projects

Ohio forests are threatened by the invasive ecosystem engineer A. agrestis. A. agrestis invasion typically co-occurs with the ecosystem engineer, Odocoileus virginianus, where their impacts may synergize. To determine the direct effects of A. agrestis invasion, fenced plots across the Cuyahoga Valley National Park that excluded deer were utilized. The species richness, Shannon diversity and evenness of woody understory flora was measured in each plot. Mustard extraction was used to determine earthworm abundance. Correlations between abundance and measured variables were used to highlight potential invasion effects. Abundance and species richness was found to have a significant, positive correlation (p = …

The Impacts Of Maple Syrup Production On The Herbaceous Layer In Appalachian Hardwood Forests, Logan Scott Ferguson

Graduate Theses, Dissertations, and Problem Reports (ETD)

Vegetation data were collected from eight maple syrup farms (sugarbushes) and eight undeveloped maple-dominated sites to examine potential differences in understory plant communities due to disturbance effects. Understory plants were identified to the species level and percent cover of aboveground leaf-area for each species was estimated within 600 total quadrats. Overstory data and environmental data were collected to help determine if they had any effect on herbaceous-layer plant communities. Species richness, Shannon diversity, and Pielou’s evenness were calculated, with the analysis showing no significant differences between the site types. The absolute cover of plant functional groups was also compared between …

Charles A. Francis, Abstracts And Publications [1969--2022], December 2022, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Contents

I. Journal articles (218), p.1

II. Book reviews (60), p. 18

III. Published abstracts (213), p. 23

IV. Books (23), p. 40

V. Chapters in books (81), p. 42

VI. Symposium or workshop proceedings (127), p. 50

VII. Symposia or extension publications edited (31), p. 62

VIII. Miscellaneous (522), p. 65

The Challenges Of Growing Orchids From Seeds For Conservation: An Assessment Of Asymbiotic Techniques, Devani Jolman, Martín I. Batalla, Alexis Hungerford, Pryce Norwood, Noah Tait, Lisa E. Wallace

Biological Sciences Faculty Publications

Lewis Knudson first successfully germinated orchid seeds asymbiotically on artificial medium in 1922. While many orchid species have since been grown asymbiotically, the tremendous variation in how species respond to artificial medium and growth conditions ex situ has also become apparent in the past century. In this study, we reviewed published journal articles on asymbiotic orchid seed germination to provide a summary of techniques used and to evaluate if these differ between terrestrial and epiphytic species, to identify areas where additional research is needed, and to evaluate whether asymbiotic germination could be used more often in ex situ conservation. We …

Influence Of Abiotic Drivers On 1-Year Seedling Survival Of Six Mangrove Species In Southeast Asia, Taylor M. Sloey, Kiah Eng Lim, Jared Moore, Jie Min Heng, Jia Min Heng, Michiel Van Breugel

Biological Sciences Faculty Publications

Establishment and survival of plant species in systems with dominant environmental drivers (i.e. factors that exert disproportionate control over species establishment and survival) is often thought to be dominated by one master variable. In forested wetlands such as mangroves, hydrology is typically considered the dominant limiting driver. At the same time, light is a major driver of plant community dynamics, with some of the best understood plant life-history tradeoffs related to fast growth under high-light conditions versus survival under low-light conditions. Yet light is given relatively limited consideration in mangrove research compared to other drivers. Understanding the relative importance of …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Featured Faculty Mentor And Student Explore The Dynamics Of This Research Relationship, Matt Bertucci, Gracie Morrison

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Using Poultry To Enhance Food Security In Stann Creek, Belize, Emily Spatz, Lisa S. Wood

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Food insecurity is a growing issue in developing and developed countries alike, and in countries like Belize, the prevalence of hunger has soared in recent years. Not having access to diets with sufficient calories and nutrients leads to a host of developmental issues, including stunting and cognitive delays. The purpose of this work was to create an all-encompassing manual for small-scale poultry production in order to provide nourishment for the students and staff of a school in Belize. After determining that the best way to meet the school’s needs was through dual-purpose birds, background research was conducted to determine small-scale …

It Takes A Muscle: Wholes, Holes, And Other Voids, Saar Shemesh

Theses and Dissertations

IT TAKES A MUSCLE¹

In the BELLY of the BEAST, the HUMAN

in the deep end of a SWIMMING POOL

in a GRAVE, looking up/out from within

at the base of a CRATER, ABYSS, PIT

the room as a CRADLE, INCUBATOR

architecture as MOTHER MOULD.²

____________________________

¹ Title is borrowed and abbreviated: Spectral Display, “It Takes A Muscle To Fall In Love,” 1982.

² For what American-English delineates as ‘mold,’ British-English uses ‘mould’ and is more specific in its technicality. The former doesn’t distinguish in spelling between mold (fungus) and mold (mould). I’m not particularly a fan of …

Quantifying Contributions Of Climate, Geography, And Gene Flow To Divergence: A Case Study For Three North American Pines, Constance E. Bolte

Theses and Dissertations

Long-lived species of trees, especially conifers, often display weak patterns of reproductive isolation, but clear patterns of local adaptation and phenotypic divergence. Discovering the evolutionary history of these patterns is paramount to a generalized understanding of speciation and the processes that confer population persistence versus those that compromise adaptive potential under rapidly changing environments. Forest trees have long generation times and low migratory potential making them especially vulnerable to population fragmentation and reductions of genetic diversity due to insufficient tracking of niche optima and adaptational lags. Within clades of the genus Pinus, evolutionary histories appear to be riddled with hybridization …

Mapping Quantitative Trait Loci And Developing First Molecular Marker For Race 5 Of Podosphera Xanthii Resistance In Melon (Cucumis Melo L.), Abdullah Ünlü, İlknur Polat, Aytül Yildirim, Ahmet Naci̇ Onus

Turkish Journal of Botany

Powdery mildew of melon caused by the Podosphaera xanthii factor is a disease that causes serious yield losses economically in all areas where melon is grown from Asia to Europe and America. The use of resistant varieties for the control of the disease is the most environmentally friendly method. However, traditional methods of melon breeding have made a noteworthy input to resistance varieties improvement, but they have been slow and incompetent in targeting complex powdery mildew disease resistance traits. To overcome these problems and to facilitate breeding programs, molecular markers closely linked to the Pm-R5 gene are needed for marker-assisted …

Molecular Analysis Of The Section Sphagnum (Sphagnaceae): First Study On Turkish Bryophytes Using Nucleotide Sequences Of The Trnl Intron Region, Mesut Kirmaci, Asli Semi̇z, Adi̇le Sari, Özden Özgün Acar, Uğur Çatak, Fulya Fi̇li̇z

Turkish Journal of Botany

The genus Sphagnum is one of the richest taxa among the Turkish bryophytes. Up to now, it has been represented by 27 taxa in six sections (Sphagnum, Acutifolia, Squarrosa, Subsecunda, Cuspidata, and Rigida). In this study, an identification key for the section Sphagnum was prepared, and the section was investigated using phylogenetic analyses, with a main focus on Turkish bryophytes. This study provides the first sequence data of the trnL intron region for five species of the section Sphagnum from Turkey (namely S. centrale, S. divinum, S. medium, S. palustre, and S. papillosum) to be used in future studies and …

Stomatal Conductance And Reed Canary Grass Suppression Traits Of Native Michigan Trees, David E. Martinez, Dave Warners

Student Papers and Reports

Reed canary grass (Phalaris arundinacea), a prominent invasive understory species, threatens native Michigan biodiversity statewide. A notable affected area includes a stretch of agricultural land along Schooley Drain in Caledonia, MI, located in the headwaters of the Plaster Creek watershed. Our study pursues the following questions: “Do native trees provide enough shade to reduce the growth of Reed canary grass?” and “Which native trees best transpire water from a floodplain?”: To answer these questions, we continued the evaluation of seven different species of native Michigan trees to investigate which species best inhibits the growth of reed canary grass …

The Emma Cole Project: Reevaluating The Flora Of Grand Rapids, William Hofmann, Hayden Janssen, Martin Vanderschoot, Garrett Crow, Dave Warners

Student Papers and Reports

In 1901, botanist and teacher Emma Cole published an account of all the vascular plants in the Grand Rapids area, which is the most comprehensive documentation of the flora in the area today. The vicinity of Grand Rapids has been developed significantly since then, and with it the surrounding natural spaces have also been greatly altered. Over the past 7 years, Calvin University’s Emma Cole Project has been inventorying the flora of greater Grand Rapids and comparing modern plant life with the flora during Cole’s time 120 years ago. This project strives to both verify species’ presence around Grand Rapids …

Review Of The Duck Factory: A History Of Waterfowl In North Dakota, By Mike Jacobs And Erik Fritzell, Douglas Johnson

The Prairie Naturalist

It was by geological accident that North Dakota became the heart of duck production in the continental United States. When the Wisconsin glaciation retreated some 11,000 years ago, it left an uneven layer of glacial till over much of North Dakota and nearby states and provinces, an area termed the Prairie Pothole Region. Large blocks of ice in the glacial till eventually melted and formed depressions that became wetlands, or prairie potholes. These were embedded in a matrix of soil that, with millennia of growth by deep-rooted prairie plants, became rich topsoil. The wetlands, surrounded by luxuriant grassland, were ideal …

Botanical Assessments Of High-Quality Southern Shrub-Carr And Hardwood Swamp Wetlands In The Undeveloped Lowell Regional Greenspace, Kent County, Michigan, Garrett Crow, Dave Warners, Haley R. Weesies, Jonathon D. Walt, Zachary Hartwig, Carolyn H. Koehn

Faculty and Professional Research

The 2019–2023 Masterplan for Kent County Parks includes the future development of acquired properties that have been designated as the Lowell Regional Greenspace (528 acres), occupying nearly the entirety of Section 22 of Lowell Charter Township in Kent County, Michigan. Four wetlands located in the same drainage basin along Karen Creek in the Lowell Regional Greenspace were inventoried for floristic quality assessments during the summers of 2016, 2018, 2019, and 2021. One of the wetlands was forested and determined to be a southern hardwood swamp community type. The other three wetlands are best classified as shrub-carr communities. In the southern …

Observing Gravitropism In Brassica Rapa Roots, Trang Ly, Maya O'Callagham, Lan Poeschl, Adil Saeed, George Zorn

UROP Posters

The objective of this experiment is to observe the effect of gravitropism on the orientation of Brassica rapa (B. rapa) roots. Specifically, amyloplasts that reside at the bottom of root tips act as gravity sensors. As plants are disturbed from upright orientation, roots automatically grow according to the downward pull of gravity. It is hypothesized that as the angle of rotation increases, the angle of root growth is inversely proportional. Five plants containing four seeds of B. rapa were grown over the course of 10 days. Each plates, aside from the control, were rotated once 90°, 80°, and 270° to …