Botany Commons^™

Analysis Of Root System Architecture And Qtl Identification In Grapevines, Sujan Thapa

Graduate Theses/Dissertations

The root system of the plant plays a vital role in water and nutrient uptake. Native North American grapevines adapted to a broad range of climatic and soil conditions, which led to the evolution of diverse root system architecture (RSA) within the Vitis genus. Despite the importance of RSA in viticulture, little is known about the genetic basis of the RSA in grapevine. I used novel root phenotyping tool, RhizoVision Analyzer to characterize the root system of 208 genotypes of an F₁ grapevine progeny obtained from a cross between Vitis rupestris Scheele B38 and Vitis riparia Michx. HP-1. Dormant …

Environmental Effects On Biomass Allocation And Small Plot Evaluations Of Aquatic Pesticides For Control Of Nitellopsis Obtusa (Starry Stonewort) Collected From Lake Koronis In Stearns County, Minnesota, Patrick J. Carver

All Graduate Theses, Dissertations, and Other Capstone Projects

Phenology is the study of critical life stages in plants in relation to shifts in environmental factors during seasonal changes. Starry stonewort is a green macro alga in the family Characeae native to Eurasia. Much of the Midwestern United States has been invaded by this species. Starry stonewort has been seen to have late season growth patterns in its invaded range. This study found that this growth pattern was dependent upon water temperature and light transmittance both of which affect biomass production and senescence. It was hypothesized that peak biomass would occur in the late summer (August), however we observed …

A New Achillea (Asteraceae) Species From Southwestern Turkey, Gürkan Semi̇z, Tuna Uysal, Meryem Bozkurt, Batikan Günal

Turkish Journal of Botany

Achillea alimeana Semiz & Uysal sp. nov. of sect. Santolinoidea DC. (Asteraceae), was described, diagnosed and illustrated as a new species. It was collected from Akdağ Mountains in Denizli Province. In this paper, the diagnostic characters of A. alimeana and its similar species were discussed in the morphological, palynological and molecular findings. As regards the new species, some notes on the ecology, conservation status, and distribution were submitted. A diagnostic key was given for related taxa.

Assessment Of Genetic Variation Of Natural Populations Of Wild Cherry (Prunus Avium L.)Via Ssr Markers, Burcu Uzan Eken, Emrah Kirdök, Ercan Veli̇oğlu, Yelda Özden Çi̇ftçi̇

Turkish Journal of Botany

Wild cherry (Prunus avium L, syn. Cerasus avium L. Moench.) is a widely spread forest tree that has ecological and economical importance. However, the genetic diversity of this species is threatened for many reasons. Therefore, a breeding and conservation program should be established in order to minimise the loss of genetic diversity. In this study, we aimed to understand the genetic structure of 440 individual wild cherries sampled from 22 different populations in Turkey using 10 SSR molecular markers. With the molecular variance analysis, we found that the genetic diversity within the population is approximately 88.5% and the genetic diversity …

Mining And Analysis Of Chloroplast Simple Sequence Repeats (Ssrs) From Eight Species Of Aquilaria, Muhammad Syahmi Hishamuddin, Ahmad Syazwan Samsuddin, Rozi Mohamed

Turkish Journal of Botany

Aquilaria is a tropical forest tree, producer of the famed and expensive agarwood. Aggressive collection of agarwood put strain on the natural stands of Aquilaria species, sparking efforts to domesticate the tree and cultivate agarwood in plantations. However, tree domestication progress is hampered by the scarcity of genomic resources that is crucial for breeding programs. In this study, the complete chloroplast (cp) genome sequences from eight Aquilaria species were analyzed in silico. For identification of the simple sequence repeats (SSRs), MISA PERL script which had a repeat length of 12 for mononucleotides (mono-), 6 for dinucleotides (di-), 4 for trinucleotides …

Karyomorphology, Ploidy Analysis, And Flow Cytometric Genome Size Estimation Of Medicago Monantha Populations, Homa Zarabizadeh, Ghasem Karimzadeh, Sajad Rashidi Monfared, Saeed Tarkesh Esfahani

Turkish Journal of Botany

Karayomorphological analysis and monoploid genome size (2Cx DNA) of 12 Iranian Medicago monantha populations are reported. Flow cytometric analysis were conducted on freshly collected seeds, using Solanum lycopersicum cv. Stupicke (2C DNA = 1.96 pg), as the internal reference standard. All populations were diploid with variable degrees of mixoploidy and two different chromosome numbers within each population. Totally, six chromosome numbers of 22, 28, 30, 32, 36, and 40 were identified. Twotyped chromosomes ("m", "sm") with a mean length of 1.65 µm (0.98-2.99 ?m) formed seven different karyotype formulas. Karyotypes were mostly symmetrical, implying the evolutionary effect of natural and …

Current Nomenclature And Systematics Of Capsella Medik. With Lectotypifications:Towards Solving The Puzzle, Yelda Güzel

Turkish Journal of Botany

The taxonomic history of Capsella Medik., one of the genera with the highest phenotypic plasticity, and thus the highest synonym number relative to the recognized species number, was reviewed. The current systematics of the genus was discussed and the exact number of taxa was determined. In light of the molecular and nomenclatural data, it was decided that the genus was represented around the world by five species and one hybrid. Considering the molecular studies that have been conducted over the 30 years it was concluded that the species of this genus are typical examples of the concept of cryptic species. …

Dianthus Berkayii (Caryophyllaceae), A New Species From Turkey, Zeki̇ Aytaç, Ali̇ Kandemi̇r, Tuğba Ertuğrul, Ahter Fi̇şne, Mevlüde Alev Ateş

Turkish Journal of Botany

Dianthus berkayii belongs to sect. Fimbriati was described and illustrated as a new species from Erzincan Province in Eastern Anatolia, Turkey. In the current study morphological, palynological, and molecular characters were compared and discussed with its closely related species. The new species is similar to D. crinitus with fimbriate corolla, linear, acuminate, ± rigid leaves. Also similar to D. vanensis with fimbriate corolla, linear, acuminate, ± rigid, curved divaricate leaves. But distinctly different from D. crinitus by having linear and curved divaricate leaves, stem with 3?4(?5) internodes (not 5?8), a style much longer than petals, and different from D. vanensis …

Limacella Subtropicana (Amanitaceae, Agaricales), A New Species From Pakistan Based On Morphological And Molecular Phylogenetic Evidences, Aiman Izhar, Abdul Rehman Niazi, Muhammad Asif, Muhammad Haq Nawaz, Hira Bashir, Abdul Nasir Khalid

Turkish Journal of Botany

Basidiomata of a hitherto undescribed Limacella species were collected from the grasslands of Punjab, Pakistan. We describe it as Limacella subtropicana, which is characterized by its viscid, white to creamy pileus, white to the creamy stipe, changing to brown when bruised, subglobose basidiospores measuring 4.0?6.3 × 3.7?5.5 ?m, an ixotrichodermal pileipellis with subcylindric to clavate terminal elements and the common presence of clamp connections in all tissues. Maximum likelihood and Bayesian inference analyses of ITS sequences and LSU sequences of nrDNA confirmed its placement in the genus Limacella. A comprehensive description and a comparison of the new taxon with other …

Effect Of Seaweed-Based Liquid Extracts On Biomass Production And Lipid Accumulation In Nannochloropsis Oculata And Dunaliella Salina, Krishna Moorthy Abarna, Rani Velu, Padmavathy P, Jawahar P, Uma A, Kalidas C, Satya Prakash Shukla

Turkish Journal of Botany

Seaweed liquid fertilizers (SLFs) contain macronutrients, micronutrients and trace nutrients essential for microalgal growth. The study aims to evaluate the efficiency of SLFs on the biomass production, biochemical and physiological processes; and the study was carried out at different SLF concentrations of selected seaweeds i.e. Kappaphycus alvarezii, Gelidiella acerosa and Turbinaria ornata. The comparative analysis of the growth performance of two unicellular green alga on three different organic media suggest that the liquid fertilizer from red seaweed was highly efficient than the SLF prepared from brown seaweed. The growth rate of N. oculata and D. salina in K. alvarezii SLF …

Role Of More Axillary Growth2 (Max2) Protein In Regulation Of Karrikin And Strigolactone Signalling Pathways, Sarika Singh, Moin Uddin, M. Masroor A. Khan, Sobia Aman Chishti, Sangram Singh, Urooj Hassan Bhatt

Turkish Journal of Botany

MORE AXILLARY GROWTH 2 (MAX2) is an F-box protein, containing leucine-rich repeats. It is a common regulator in signalling pathways of both karrikin and strigolactone, and has several homologs such as MAX1, MAX3, and MAX4, which play a key role in the biosynthesis of strigolactone. It also interacts with various receptors and repressors of karrikin and strigolactone. Karrikins are a group of plant growth regulators found in the smoke of burning plant material and had the ability to stimulate seed germination, whereas strigolactone is a newly discovered plant hormone that regulates shoot and root branching and plays a vital role …

Modulation Of Physiological Plasticity Through Structural And Functional Modifications In Stipagrostis Plumosa L. For Adaptability To Hyper-Arid Environments, Safura Bibi, Muhammad Sajid Aqeel Ahmad, Mansoor Hameed, Ambreen Khadija Alvi

Turkish Journal of Botany

The role of morpho-physiological attributes along with the antioxidant potential of Stipagrostis plumosa L. populations collected from arid regions in adaptability to aridity was evaluated. Root to shoot length, chlorophyll, carotenoids, and organic osmolytes (total free amino acids, total soluble proteins, glycinebetaine, and proline) increased with more activities of antioxidant enzymes (APX, CAT, POD, and SOD). Root and shoot fresh:dry weight ratio and leaf area decreased with increasing dryness ratio (D: 8.40?30.49) and decreasing precipitation (519 mm to 143 mm). Hyperarid populations [Noorpur Thal - NpT (D: 10.90; P: 400 mm) and Cholistan - Cho (D:30.49; P: 143 mm)] relied …

Effects Of Moderate Drought On Leaf Bulliform Cells Of Aquatic And Coastal Population Of Phragmites Australis, Olena Nedukha

Turkish Journal of Botany

Studying leaves of aquatic and terrestrial populations of Phragmites australis grown on the bank of the Venetian strait of the Dnipro River in Kyiv (Ukraine) for establishing the role of bulliform cells in the mechanisms of plant resistance to moderate soil drought were studied. Bulliform (motor) cells participate in the twisting and folding of leaves during drought and strong sunlight. The study of bulliform cells in the leaves of the aquatic and terrestrial populations of P. australis was carried out using the methods of light microscopy, cytochemical methods, laser confocal microscopy, and biochemical methods. The comparative analysis of the structure …

Marrubium Zeydanlii (Lamiaceae), A New Species From Turkey, Zeki̇ Aytaç, Bahar Kaptaner İğci̇, Tuğba Ertuğrul, Nur Münevver Pinar, Deni̇z Aygören Uluer, Bariş Özüdoğru

Turkish Journal of Botany

Marrubium zeydanlii (Lamiaceae) is described as a new species from Turkey. It is similar to M. depauperatum and M. sivasense; however, it is distinguished from M. depauperatum by having lanate hairs on the stem, oblanceolate dentate leaves, 4?6-flowered verticillasters. It is also distinguished from M. sivasense by having lanate hairs on the stem, oblanceolate leaves, and shorter petals. The pollen grains are radially symmetrical and isopolar, the shape is oblate-spheroidal with the polar axes 16.7-20 µm and the equatorial axes 17.6-19.3 µm. trnL-F region was used to identify the phylogenetic position of the newly described species. The results …

The Development Of A Photographic Atlas Of Plant Adaptations For Pollination, Bethany Van Dusseldorp

Honors Program Theses

Plants have biotic, abiotic, or both biotic and abiotic adaptations for pollination, depending on how they are structured and the attraction between the plant and pollinator. The main focus for this project was biotic adaptations for pollination, and how various plants are specifically structured for the insect, bird, or mammal to pick up the pollen and carry it to the next plant. Documentation, using image/focus stacking and macro photography, was done of the structures of various plants from the University of Northern Iowa (UNI) Botanical Center to support the reason for why plants are structured the way they are. While …

A Micro-Environmental System For Fast Propagation Of Blueberries, Tristan Bonifield

Dissertations, Master's Theses and Master's Reports

The demand for blueberries has continued to rise over the decades as its popularity has spread in North America and the world. Propagation of new plants to supply new farms and individuals is needed to meet that demand. Here we report the invention of a closed system that was tested by examining the growth of the cuttings (plant length, rooting, and root length) after a one-month period in both the proposed system and a traditional mist system. The proposed system showed a few statistically significant advantages over the traditional mist system with no consistent trend, besides a decrease in wilting …

Field Validation Of A Farmer Supplied Data Approach To Close Soybean Yield Gaps In The Us North Central Region, José F. Andrade, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Shawn P. Conley, John Gaska, Herman J. Kandel, Laura E. Lindsey, Seth Naeve, Scott Nelson, Maninder P. Singhi, Laura J. Thompson, James E. Specht, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

CONTEXT: Producer-reported data can be used to identify suites of management practices that lead to higher yield and profit. However, a rigorous validation of the approach in relation to its potential impact on farmer yield and profit is lacking.

OBJECTIVE: This study aimed to validate a producer-data approach on its capability to guide on-farm evaluation of management practices with greatest potential for increasing producer yield and profit. We show proof of concept using soybean in the North Central US region as a case study.

METHODS: We used a combination of regression tree analysis and a spatial framework to determine practices …

A New Perspective When Examining Maize Fertilizer Nitrogen Use Efficiency, Incrementally, Newell R. Kitchen, Curtis J. Ransom, James S. Schepers, Jerry L. Hatfield, Raymond Massey, Scott T. Drummond

Department of Agronomy and Horticulture: Faculty Publications

For maize (Zea mays L.), nitrogen (N) fertilizer use is often summarized from field to global scales using average N use efficiency (NUE). But expressing NUE as averages is misleading because grain increase to added N diminishes near optimal yield. Thus, environmental risks increase as economic benefits decrease. Here, we use empirical datasets obtained in North America of maize grain yield response to N fertilizer (n = 189) to create and interpret incremental NUE (iNUE), or the change in NUE with change in N fertilization. We show for those last units of N applied to reach economic optimal N …

Inactivation Of The Entire Arabidopsis Group Ii Gh3s Confers Tolerance To Salinity And Water Deficit, Rubén Casanova-Sáez, Eduardo Mateo-Bonmatí, Jan Šimura, Aleš Pěnčík, Ondřej Novák, Paul Staswick, Karin Ljung

Department of Agronomy and Horticulture: Faculty Publications

Indole-3-acetic acid (IAA) controls a plethora of developmental processes. Thus, regulation of its concentration is of great relevance for plant performance. Cellular IAA concentration depends on its transport, biosynthesis and the various pathways for IAA inactivation, including oxidation and conjugation.

Group II members of the GRETCHEN HAGEN 3 (GH3) gene family code for acyl acid amido synthetases catalysing the conjugation of IAA to amino acids. However, the high degree of functional redundancy among them has hampered thorough analysis of their roles in plant development.

In this work, we generated an Arabidopsis gh3.1,2,3,4,5,6,9,17 (gh3oct) mutant to knock out the group II …

Root Exudates Impact Plant Performance Under Abiotic Stress, Yen Ning Chai, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Plant root exudates serve pivotal roles in supporting plant development and interactions with the physicochemical and biological factors in the rhizosphere. Under stress conditions, root exudation is involved in enhancing plant resource-use efficiency and facilitating the crosstalk between plant and soil microbes to ameliorate stress. Although there are a large number of root exudates that remain to be characterized, recent technological advancements have allowed for the function of many exudate compounds to be elucidated. In this review, we discuss current knowledge about the key root exudates that modulate plant resource-use efficiency under various abiotic stresses including drought, aluminum toxicity, phosphorus, …