Botany Commons^™

A New Scorzonera (Asteraceae) Species From South Anatolia, Turkey, And Its Taxonomic Position Based On Molecular Data, Kami̇l Çoşkunçelebi̇, Serdar Makbul, Mutlu Gültepe, Deni̇z Onat, Murat Erdem Güzel, Seda Okur

Turkish Journal of Botany

Scorzonera zorkunensis Coskuncelebi & S.Makbul (Asteraceae) is described and illustrated from Turkey. It grows on serpentine in alpine steppe vegetation together with several endemic Scorzonera L. species in southern Anatolia at altitudes of 2075-2100 m. It is morphologically similar to S. pisidica Hub.-Mor., but it differs in its habit and stem and leaf pubescence. Additionally, the size and micromorphological characters of the achenes and some anatomical traits of the leaves, stems, and roots are helpful in distinguishing these closely related taxa. The phylogenetic analyses based on nrDNA ITS sequence data indicate that S. pisidica is a sister species of the …

Morphology And Density Of Trichomes And Stomata Of Trichosanthes Cucumerina (Cucurbitaceae) As Affected By Leaf Age And Salinity, Odunayo Clement Adebooye, Mauricio Hunsche, Georg Noga, Christa Lankes

Turkish Journal of Botany

We investigated the relationship between leaf age and trichome/stomata densities in the snake tomato (Trichosanthes cucumerina L.). In a second experiment, the effects of different salinity levels on trichome and stomatal densities and their micromorphology were investigated. The leaf age investigation utilised young, semiold, and old leaves, while the salinity study utilised 0, 60, 120, and 180 mM NaCl for the investigation. Two morphotypes (Variant --Green and Variant B-Light Green) of T. cucumerina were used for the salinity experiment while only Variant B-Light Green was used for the leaf age investigation. This study identified 2 discernible types of trichomes in …

Agricultural And Municipal Waste As Potting Media Components For The Growth And Flowering Of Dahlia Hortensis ‘Figaro’, Usman Tariq, Shoaib Ur Rehman, Muhammad Aslam Khan, Adnan Younis, Muhammad Yaseen, Muhammad Ahsan

Turkish Journal of Botany

This research project was conducted to evaluate the use of different waste materials as potting media for the dwarf variety Dahlia hortensis 'Figaro.' A total of 10 treatments were used where each treatment, consisting of 9 plants, was replicated 3 times. The results associated with plant growth parameters indicated that the maximum values for plant height, number of side shoots per plant, number of tubers per plant, flower diameter, and least days to flower emergence were observed in media containing coconut coir; the maximum corm weight per plant, however, was found in T_8, where rice hull was added to silt. …

Induction Of Phytochelatin And Responses Of Antioxidants Under Cadmium Stress In Safflower (Carthamus Tinctorius) Seedlings, Shahram Namdjoyan, Shahrokh Namdjoyan, Hossein Kermanian

Turkish Journal of Botany

We investigated the role of antioxidant compounds (e.g.,\alpha-tocopherol, phytochelatins, glutathione, and other non-protein thiols) in the cadmium (Cd) tolerance of safflower (Carthamus tinctorius L. cv. Arak2811) seedlings exposed to different concentrations of Cd (0-100 \muM) for a week. A concentration- and tissue- dependent response to Cd was observed. Increasing Cd supply markedly reduced the dry weight of roots. Plants accumulated a substantial amount of Cd, especially in the roots. Levels of \alpha-tocopherol showed a significant increase with an increase in the concentration of Cd in leaves. Upon Cd exposure, \alpha-tocopherol levels followed a similar pattern in the root tissue with …

The Response Of The Xerophytic Plant Gypsophila Aucheri To Salt And Drought Stresses: The Role Of The Antioxidant Defence System, Aşkim Hedi̇ye Sekmen Esen, Rengi̇n Özgür, Bariş Uzi̇lday, Zehra Özgecan Tanyolaç, Ahmet Di̇nç

Turkish Journal of Botany

The aim of the present study was to determine the antioxidant system responses of a xerophytic plant to salinity and drought, which were not elucidated before. Physiological and antioxidant responses of the xerophytic plant Gypsophila aucheri Boiss. were investigated under salinity (100 and 300 mM NaCl) and drought (withholding watering) treatment for 2 weeks in a controlled growth chamber. Besides growth responses (relative growth rate (RGR)), superoxide dismutase (SOD), catalase (CAT), peroxidase (POX), ascorbate peroxidase (APX), and glutathione reductase (GR) activities, and SOD and CAT isoenzymes activities were determined under stress conditions. Moreover, the level of lipid peroxidation was determined …

An Illustrated Survey On The Morphological Characters In Three Species Of The Diatom Genus Mastogloia (Bacillariophyceae), Fatma Sabanci

Turkish Journal of Botany

The valve morphology of Mastogloia braunii Grunow, Mastogloia pumila Cleve, and Mastogloia vasta Hustedt were investigated using field material. Specimens for study were collected from Homa Lagoon, İzmir Bay, Turkey (4-29 °C; salinity 35%o-54%o) as epipelic and epiphytic (Ulva lactuca L.). The valve morphological characteristics of the 3 species were measured by calibrated ocular micrometer using 20 specimens from each species per station. The valve of M. braunii was 35.15-80.20 µm in length and 12.35-19.85 µm in width, the valve of M. pumila was 13.70-31.85 µm in length and 5.75-9.00 µm in width, and the valve of M. vasta was …

Biological Effects Of Copper On Prosopis Pubescens (Screw Bean Mesquite), Marian Nicte Zappala

Open Access Theses & Dissertations

Phytoremediation is an emerging technology for cleaning industrial and urban contamination (Peuke and Rennenberg, 2005). Many factors including germination rate, biomass changes, biochemical changes, and nutrient changes must be determined in order to utilize a plant for phytoremediation. Our results showed that Prosopis pubescens (Screw bean mesquite) is a hyperaccumulator of copper from copper sulfate and a feasible option to remediate fields with up to 200 ppm of copper sulfate.

Screw bean mesquite seeds are viable even after 30 years of storage. Both copper sulfate and copper nitrate decreased the germination rate of screw bean mesquite seeds. In soil grown …

Inheritance Of Grain Polyphenol Oxidase (Ppo) Activity In Multiple Wheat (Triticum Aestivum L.) Genetic Backgrounds, Somrudee Nilthong, Robert A. Graybosch, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Grain polyphenol oxidase (PPO) activity can cause discoloration of wheat (Triticum aestivum L.) food products. Five crosses (PI 117635/Antelope; Fielder/ NW03681; Fielder/Antelope; NW07OR1070/Antelope; NW07OR1066/OR2050272H) were selected to study the genetic inheritance of PPO activity. STS markers, PPO18, PPO29 and STS01, were used to identify lines with putative alleles at the Ppo-A1 and Ppo-D1 loci conditioning low or high PPO activity. ANOVA showed significant genotypic effects on PPO activity (P\0.0001) in all populations. The generations and generation 9 genotype effects were not significant in any population. A putative third (null) genotype at Ppo-A1 (no PCR fragments for PPO18) was discovered …

Identification And Characterization Of Four Missense Mutations In Brown Midrib 12 (Bmr12), The Caffeic O-Methyltranferase (Comt) Of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Modifying lignin content and composition are targets to improve bioenergy crops for cellulosic conversion to biofuels. In sorghum and other C4 grasses, the brown midrib mutants have been shown to reduce lignin content and alter its composition. Bmr12 encodes the sorghum caffeic O-methyltransferase, which catalyzes the penultimate step in monolignol biosynthesis. From an EMS-mutagenized TILLING population, four bmr12 mutants were isolated. DNA sequencing identified the four missense mutations in the Bmr12 coding region, which changed evolutionarily conserved amino acids Ala71Val, Pro150Leu, Gly225Asp, and Gly325Ser. The previously characterized bmr12 mutants all contain premature stop codons. These newly identified mutants, along …

Cultivating A Movement: Excerpts From An Oral History Of Organic Farming And Sustainable Agriculture On California’S Central Coast [Book Review], Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Edited by I. Reti and S. Rabkin, 2011. University of California, Santa Cruz, Library, Santa Cruz, California, United States. 299 p., US$19.95, ISBN 9-780972-33431, paper.

Often the most compelling evidence for success of organic farming comes from the personal stories of farmers. Coupled with reports on the application of science in organics, the practical knowledge of people in the field provides a rich foundation for the ongoing growth of this intriguing sector of the food system. This collection of interviews by the staff of the Regional History Project is one unique activity of the University of California, Santa Cruz library, …

Estimating Construction Costs For A Low-Cost Quonset-Style Greenhouse, David P. Lambe, Stacy A. Adams, Ellen T. Paparozzi

Department of Agronomy and Horticulture: Faculty Publications

Double polyethylene Quonset-style greenhouses offergrowers and farmers a more cost-effective structure than glass- or acrylic-covered structures for growing plants off-season. These greenhouses are especially applicablefor producing off-season high value crops such as fruits and vegetables for local markets. To support this production alternative, this publication contains a list of greenhouse components, the start-up costs associated with these items and an estimate of the number of person hours required to assemble and outfit a 24-foot-by-72-foot double polyethylene, air-inflated greenhouse structure. As there are many options available for building double polyethylene greenhouses, the main purpose of this publication is to identify the …

The ‘Pi 438489b’ By ‘Hamilton’ Snp-Based Genetic Linkage Map Of Soybean [Glycine Max (L.) Merr.] Identified Quantitative Trait Loci That Underlie Seedling Sds Resistance, Kassem My Abdelmajid, Laura Ramos, Leonor Leandro, Gladys Mbofung, D. L. Hyten, Stella K. Kantartzi, Robert L. Grier Iv, Victor N. Njiti, Khalid Meksem

Department of Agronomy and Horticulture: Faculty Publications

Soybeans [Glycine max (L.) Merr.] are susceptible to many diseases including fungal diseases such as soybean sudden death syndrome (SDS). Several studies reported SDS resistance quantitative trait loci (QTL) on the soybean genome using different recombinant inbred line (RIL) populations and low density genetic linkage maps. High density exclusively single nucleotide polymorphisms-based (SNP-based) maps were not yet reported in soybean. The objectives of this study were (1) to construct a high density SNP-based genetic linkage map of soybean using the ‘PI438489B’ by ‘Hamilton’ (PIxH, n=50) recombinant inbred line population, and (2) to map QTL for SDS resistance using this …

Structural Variants In The Soybean Genome Localize To Clusters Of Biotic Stress-Response Genes, Leah K. Mchale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide structural and gene content variations are hypothesized to drive important phenotypic variation within a species. Structural and gene content variations were assessed among four soybean (Glycine max) genotypes using array hybridization and targeted resequencing. Many chromosomes exhibited relatively low rates of structural variation (SV) among genotypes. However, several regions exhibited both copy number and presence-absence variation, the most prominent found on chromosomes 3, 6, 7, 16, and 18. Interestingly, the regions most enriched for SV were specifically localized to gene-rich regions that harbor clustered multigene families. The most abundant classes of gene families associated with these regions …

Identification Of Positive Yield Qtl Alleles From Exotic Soybean Germplasm In Two Backcross Populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, R. L. Nelson

Department of Agronomy and Horticulture: Faculty Publications

Increasing seed yield is an important breeding goal of soybean [Glycine max (L.) Merr.] improvement efforts. Due to the small number of ancestors and subsequent breeding and selection, the genetic base of current soybean cultivars in North America is narrow. The objective of this study was to map quantitative trait loci (QTL) in two backcross populations developed using soybean plant introductions as donor parents. The first population included 116 BC₂F₃-derived lines developed using ‘‘Elgin’’ as the recurrent parent and PI 436684 as the donor parent (E population). The second population included 93 BC₃F …

Molecular Mapping Of Soybean Rust Resistance In Soybean Accession Pi 561356 And Snp Haplotype Analysis Of The Rpp1 Region In Diverse Germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust (SBR), caused by Phakopsora pachyrhizi Sydow, is one of the most economically important and destructive diseases of soybean [Glycine max (L.) Merr.] and the discovery of novel SBR resistance genes is needed because of virulence diversity in the pathogen. The objectives of this research were to map SBR resistance in plant introduction (PI) 561356 and to identify single nucleotide polymorphism (SNP) haplotypes within the region on soybean chromosome 18 where the SBR resistance gene Rpp1 maps. One-hundred F_2:3 lines derived from a cross between PI 561356 and the susceptible experimental line LD02-4485 were genotyped with genetic …

Advances In Genome Sequencing And Genotyping Technology For Soybean Diversity Analysis, David L. Hyten

Department of Agronomy and Horticulture: Faculty Publications

The completion of a soybean draft whole genome sequence along with advances in sequencing and genotyping technologies are creating a revolution in soybean genomics. The draft whole genome sequence of soybean is allowing researchers to fully take advantage of this new technology and is rapidly changing how soybean germ plasm is mined. Genetic markers such as SNPs can be quickly identified by using next generation sequencing and assayed on a large number of materials using advanced technologies that can genotype tens of thousands of markers on thousands of individuals very rapidly. This ability to qUickly identify and genotype genetic diversity …

High-Resolution Mapping Of Open Chromatin In The Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, Jiming Jiang

Department of Agronomy and Horticulture: Faculty Publications

Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide high-resolution maps of DNase I hypersensitive (DH) sites from both seedling and callus tissues of rice (Oryza sativa). Approximately 25% of the DH sites from both tissues were found in putative promoters, indicating that the vast majority of the gene regulatory elements in rice are not located in promoter regions. We found 58% more DH sites in …

2012 Wildflower Of The Year: Partridge Berry, Mitchella Repens, W. John Hayden

Biology Faculty Publications

Although partridge berry is a small and creeping herb, its jewel-like beauty rewards attentive naturalists year-round.

Light Management Important Factor For Partridge Berry, W. John Hayden

Biology Faculty Publications

Factors essential for plant life include adequate levels of light, moisture, mineral nutrients, and temperature; though the list is small, each is crucial for survival. This article is a contemplation of how one of these critical factors, light, impacts the biology of our 2012 Wildflower of the Year, Mitchella repens, partridge berry. Aside from issues of reproductive biology, ecological literature on partridge berry is meager. Consequently most of what follows is derived from general works on woodland ecology, perusal of which provides sufficient insight about the biology of Mitchella to inspire ideas worthy of further study.

A New Species Of Eryngium (Apiaceae) From Turkey: Eryngium Babadaghensis, Gülay Ecevi̇t Genç, Emi̇ne Akalin Uruşak, Arno Wörz

Turkish Journal of Botany

Eryngium babadaghensis G.Ecevit-Genç, E.Akalın & A.Wörz sp. nova (Apiaceae, Saniculoideae) is described as a new species from the Babadağ (Fethiye-Muğla) in south-west Turkey. The new species is closely related to E. kotschyi Boiss., which is endemic to Turkey. A Latin diagnosis; taxonomic descriptions; photos of the holotype, fruit, and transverse sections of the basal leaves, peduncles, and fruits; and scanning electron microscope (SEM) images of the calyx and surface of the scales on the mericarp of the new species are presented. The geographical distribution of the new species and E. kotschyi are mapped. Diagnostic characters of E. babadaghensis and E. …