Botany Commons^™

The ‘Pi 438489b’ By ‘Hamilton’ Snp-Based Genetic Linkage Map Of Soybean [Glycine Max (L.) Merr.] Identified Quantitative Trait Loci That Underlie Seedling Sds Resistance, Kassem My Abdelmajid, Laura Ramos, Leonor Leandro, Gladys Mbofung, D. L. Hyten, Stella K. Kantartzi, Robert L. Grier Iv, Victor N. Njiti, Khalid Meksem

Department of Agronomy and Horticulture: Faculty Publications

Soybeans [Glycine max (L.) Merr.] are susceptible to many diseases including fungal diseases such as soybean sudden death syndrome (SDS). Several studies reported SDS resistance quantitative trait loci (QTL) on the soybean genome using different recombinant inbred line (RIL) populations and low density genetic linkage maps. High density exclusively single nucleotide polymorphisms-based (SNP-based) maps were not yet reported in soybean. The objectives of this study were (1) to construct a high density SNP-based genetic linkage map of soybean using the ‘PI438489B’ by ‘Hamilton’ (PIxH, n=50) recombinant inbred line population, and (2) to map QTL for SDS resistance using this …

Structural Variants In The Soybean Genome Localize To Clusters Of Biotic Stress-Response Genes, Leah K. Mchale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide structural and gene content variations are hypothesized to drive important phenotypic variation within a species. Structural and gene content variations were assessed among four soybean (Glycine max) genotypes using array hybridization and targeted resequencing. Many chromosomes exhibited relatively low rates of structural variation (SV) among genotypes. However, several regions exhibited both copy number and presence-absence variation, the most prominent found on chromosomes 3, 6, 7, 16, and 18. Interestingly, the regions most enriched for SV were specifically localized to gene-rich regions that harbor clustered multigene families. The most abundant classes of gene families associated with these regions …

Identification Of Positive Yield Qtl Alleles From Exotic Soybean Germplasm In Two Backcross Populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, R. L. Nelson

Department of Agronomy and Horticulture: Faculty Publications

Increasing seed yield is an important breeding goal of soybean [Glycine max (L.) Merr.] improvement efforts. Due to the small number of ancestors and subsequent breeding and selection, the genetic base of current soybean cultivars in North America is narrow. The objective of this study was to map quantitative trait loci (QTL) in two backcross populations developed using soybean plant introductions as donor parents. The first population included 116 BC₂F₃-derived lines developed using ‘‘Elgin’’ as the recurrent parent and PI 436684 as the donor parent (E population). The second population included 93 BC₃F …

Molecular Mapping Of Soybean Rust Resistance In Soybean Accession Pi 561356 And Snp Haplotype Analysis Of The Rpp1 Region In Diverse Germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust (SBR), caused by Phakopsora pachyrhizi Sydow, is one of the most economically important and destructive diseases of soybean [Glycine max (L.) Merr.] and the discovery of novel SBR resistance genes is needed because of virulence diversity in the pathogen. The objectives of this research were to map SBR resistance in plant introduction (PI) 561356 and to identify single nucleotide polymorphism (SNP) haplotypes within the region on soybean chromosome 18 where the SBR resistance gene Rpp1 maps. One-hundred F_2:3 lines derived from a cross between PI 561356 and the susceptible experimental line LD02-4485 were genotyped with genetic …

Advances In Genome Sequencing And Genotyping Technology For Soybean Diversity Analysis, David L. Hyten

Department of Agronomy and Horticulture: Faculty Publications

The completion of a soybean draft whole genome sequence along with advances in sequencing and genotyping technologies are creating a revolution in soybean genomics. The draft whole genome sequence of soybean is allowing researchers to fully take advantage of this new technology and is rapidly changing how soybean germ plasm is mined. Genetic markers such as SNPs can be quickly identified by using next generation sequencing and assayed on a large number of materials using advanced technologies that can genotype tens of thousands of markers on thousands of individuals very rapidly. This ability to qUickly identify and genotype genetic diversity …

High-Resolution Mapping Of Open Chromatin In The Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, Jiming Jiang

Department of Agronomy and Horticulture: Faculty Publications

Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide high-resolution maps of DNase I hypersensitive (DH) sites from both seedling and callus tissues of rice (Oryza sativa). Approximately 25% of the DH sites from both tissues were found in putative promoters, indicating that the vast majority of the gene regulatory elements in rice are not located in promoter regions. We found 58% more DH sites in …

Molecular Phylogenetics Of Alternanthera (Gomphrenoideae, Amaranthaceae): Resolving A Complex Taxonomic History Caused By Different Interpretations Of Morphological Characters In A Lineage With C4 And C3-C4 Intermediate Species, Ivonne Sánchez-Del Pino, Timothy J. Motley, Thomas Borsch

Biological Sciences Faculty Publications

Aternanthera (Amaranthaceae) is a diverse genus (80-200 species) largely restricted to the American Tropics. With Pedersenia and Tidestromia, it makes up the Alternantheroid clade in Gomphrenoideae. Parsimony and Bayesian analyses of nucleotide sequences of nuclear (ITS) and plastid (rpl16, trnL-F) and morphological characters identify that the capitate stigma of Alternanthera is a synapomorpy within the Alternantheroids. Within Alternanthera, two major clades were resolved, both of which were marked by otherwise homoplasious characters of the gynoecium: Clade A [99% jackknife (JK); 1.0 posterior probability (PP)] with nine species and Clade B (60% JK; 0.98 PP) with 22 …

Efficacy Of A Novel Molecular Tool In Silencing Arabidopsis Genes, Chase Purnell, Vibha Srivastava, M. Aydin Akbudak, Scott J. Nicholson

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

RNA interference (RNAi), a pathway capable of silencing genes, has until recently only been achievable in the laboratory by the use of one method, expression of inverted repeat sequences of DNA. These constructs generate a double-stranded RNA, which in turn induce post-transcriptional silencing of other genes that bear sequence homology with the transgene. This approach of targeted gene silencing is extremely useful for studying the function of genes and engineering new traits in both plants and animals. It has recently been discovered that a transgene lacking the polyadenylation signal, called a truncated transgene, is also capable of inducing RNAi in …

2012 Wildflower Of The Year: Partridge Berry, Mitchella Repens, W. John Hayden

Biology Faculty Publications

Although partridge berry is a small and creeping herb, its jewel-like beauty rewards attentive naturalists year-round.

Light Management Important Factor For Partridge Berry, W. John Hayden

Biology Faculty Publications

Factors essential for plant life include adequate levels of light, moisture, mineral nutrients, and temperature; though the list is small, each is crucial for survival. This article is a contemplation of how one of these critical factors, light, impacts the biology of our 2012 Wildflower of the Year, Mitchella repens, partridge berry. Aside from issues of reproductive biology, ecological literature on partridge berry is meager. Consequently most of what follows is derived from general works on woodland ecology, perusal of which provides sufficient insight about the biology of Mitchella to inspire ideas worthy of further study.

Lectotypification, Description, And Distribution Of Arabis Deflexa (Cruciferae), Bi̇rol Mutlu, Sadik Eri̇k

Turkish Journal of Botany

In this paper, a lectotype for Arabis deflexa Boiss. is designated, and detailed morphological properties and differences between related taxa and a distribution map are given. Furthermore, an IUCN threat category is proposed.

Rugaspermum Minuta - A New Species Of The Seed Genus Rugaspermum From The Triassic Of Nidpur, India, Nupur Bhowmik, Shabnam Parveen

Turkish Journal of Botany

This paper provides a description of a new species of Rugaspermum D.D.Pant & Basu, R. minuta Bhowmik & Parveen, from the Nidpur Triassic beds. The dispersed seeds were recovered after macerating large chunks of shale in hydrofluoric acid. The structurally preserved compressed seed is platyspermic, orthotropus, and oval- to barrel-shaped with a short beak-like micropyle. The surfaces of the seeds are wrinkled and there is a wide lateral ridge running from the apex to the base on both the obverse and reverse sides. Upon maceration, the seed yielded 4 membranes: outer, inner, nucellar, and megaspore membranes. The outer cuticle of …

Epiphytic Lichen Diversity On Quercus Cerris And Q. Frainetto In The Marmara Region (Turkey), Seyhan Oran, Şule Öztürk

Turkish Journal of Botany

The epiphytic diversity of lichens associated with Quercus cerris L. and Quercus frainetto Ten. were investigated in 21 localities of the Marmara region. A total of 106 taxa belonging to 49 genera were reported on Q. cerris and Q. frainetto, and 16 of those taxa were recorded for the first time in the Marmara region. The number of lichen species found on Q. cerris was 83, while 85 taxa were found on Q. frainetto. Several differences regarding the lichen taxa were found in these 2 oaks species even though they were growing in the same habitat and in the same …

Floristic Lichen Records From Kemaliye District (Erzincan) And Van Province, Yalçin Karagöz, Ali̇ Aslan

Turkish Journal of Botany

Numerous lichen specimens from 32 locations in Kemaliye District of Erzincan Province and 4 locations in Van Province were examined. In total 144 lichens, including 5 varieties, 2 subspecies and 4 forms, in 47 genera were identified. Acarospora lavicola J.Steiner, Adelolecia kolaensis (Nyl.) Hertel & Rambold, and Arthonia apotheciorum (A. Massal.) Almq. were found to be new for Turkey. All identified taxa, excluding the ones mentioned above, are new for Kemaliye and 101 taxa are new for Erzincan Province.

Growth And Photochemical Responses Of Three Crop Species Treated With Textile Azo Dyes, Nuran Çi̇çek, Banu Efeoğlu, Deni̇z Tanyolaç, Yasemi̇n Ekmekçi̇, Reto Jörg Strasser

Turkish Journal of Botany

The present study was conducted to investigate the impact of textile dye on the early seedling stage of 3 crops: barley, maize, and wheat. Seeds were imbibed in different concentrations of textile dye for 12 h and were then grown in a controlled growth room for 8 days with a related dye solution. Some growth and polyphasic chlorophyll fluorescence parameters were measured and analysed to appraise the effect of textile dye on the 3 crops. Although different crop species showed differences in response to different concentrations, textile dye generally affected almost all radicle growth parameters more adversely than coleoptile growth …

Three New Records For Turkey: Allium Giganteum (Liliaceae), Grammosciadium Scabridum, And Ferulago Angulata Subsp. Carduchorum (Apiaceae), Lütfi̇ Behçet, İdri̇s Kaval, Mustafa Rüstemoğlu

Turkish Journal of Botany

Allium giganteum Regel (Liliaceae), Grammosciadium scabridum Boiss., and Ferulago angulata (Schlecht.) Boiss. subsp. carduchorum (Boiss. & Hausskn.) D.F.Chamb. (Apiaceae) are reported as new records for the Turkish flora. They have been identified using the collected specimens and Flora Iranica. The taxa's diagnostic characters, habitats, photos, and a distribution map of the new records in Turkey are given.

Comparative Studies Of Six Populations Of Isoetes Panchganiensis From India, Brij Bhan Yadav, Sarvesh Kumar Singh, Manju Srivastava, Gopal Krishan Srivastava

Turkish Journal of Botany

Six populations of Isoetes panchganiensis G.K.Srivast., D.D.Pant & P.K.Shukla growing in different environmental conditions of the Western Ghats have been studied to determine the range of variation within the species. The present investigation does not show any variation in habitat (aquatic), rhizomorph (trilobed), velum (fenestra), and presence or absence of peripheral strands; however, there is a subtle variation in the length of plants, number of leaves, size of megasporangia, and size and ornamentation of the megaspores. The basic organisation of the megaspores of all the populations is almost same, but the finer details of the ornamentation of the megaspores exhibit …

Biological Effects Of Copper On Prosopis Pubescens (Screw Bean Mesquite), Marian Nicte Zappala

Open Access Theses & Dissertations

Phytoremediation is an emerging technology for cleaning industrial and urban contamination (Peuke and Rennenberg, 2005). Many factors including germination rate, biomass changes, biochemical changes, and nutrient changes must be determined in order to utilize a plant for phytoremediation. Our results showed that Prosopis pubescens (Screw bean mesquite) is a hyperaccumulator of copper from copper sulfate and a feasible option to remediate fields with up to 200 ppm of copper sulfate.

Screw bean mesquite seeds are viable even after 30 years of storage. Both copper sulfate and copper nitrate decreased the germination rate of screw bean mesquite seeds. In soil grown …

Microelement Localization In Leaves Of Populus Spp. And Tolerance Mechanisms To Boron-Salt Toxicity, Daniel Arriaga

Open Access Theses & Dissertations

Phytoremediation has been proposed as a low-cost, environmentally friendly alternative to clean highly contaminated sites. Phytoremediation using trees offer the advantage of metal immobilization (phytostabilization), high hydraulic pumping pressures, produce large plant biomass, absorption of total dissolved salts within their tissue, long life spans, less frequent irrigation and, a massive root system that helps soil attachment. Hybrid poplar varieties are long-lived, perennial, fast growing, and produce a large amount of foliage to harvest. Boron is an essential micronutrient for plants. Certain locations, such as California and Turkey, have suffered from high boron efflux from irrigation waters. It has been identified …

Botanical Garden News, Georgia Southern University

Garden of the Coastal Plain (Archived)

No abstract provided.