Agricultural Science Commons^™

Community Structures Of Fecal Bacteria In Cattle From Different Animal Feeding Operations, Orin C. Shanks, Catherine A. Kelty, Shawn Archibeque, Michael Jenkins, Ryan Newton, Sandra L. Mclellan, Susan M. Huse, Mitchell L. Sogin

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The fecal microbiome of cattle plays a critical role not only in animal health and productivity but also in food safety, pathogen shedding, and the performance of fecal pollution detection methods. Unfortunately, most published molecular surveys fail to provide adequate detail about variability in the community structures of fecal bacteria within and across cattle populations. Using massively parallel pyrosequencing of a hypervariable region of the rRNA coding region, we profiled the fecal microbial communities of cattle from six different feeding operations where cattle were subjected to consistent management practices for a minimum of 90 days. We obtained a total of …

Use Of Gis-Based Site-Specific Nitrogen Management For Improving Energy Efficiency, Kevin F. Bronson, Peter C. Scharf, Newell R. Kitchen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

To our knowledge, geographical information system (GIS)-based site-specific nitrogen management (SSNM) techniques have not been used to assess agricultural energy costs and efficiency. This chapter uses SSNM case studies for corn (Zea mays L.) grown in Missouri and cotton (Gossypium hirsutum L.) grown in Texas. In five case studies, the impact of SSNM will be compared with blanket N fertilizer recommendations. The five case studies are investigating (I) the impact N on energy produced in cotton production, (2) the impact of variable-rate N for cotton production based on soil nitrate and crop reflectance, (3) the feasibility of variable-rate …

Twentieth-Century Trends In Essential Fatty Acid Intakes And The Predicted Omega-3 Index: Evidence Versus Estimates, William S. Harris, David M. Klurfeld

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Although the health benefits of omega-3 (n–3) fatty acids are widely appreciated, those of the omega-6 (n–6) fatty acids have become somewhat controversial in recent years, with some viewing them as harmful at current intakes (1, 2) and others (3) [including the American Heart Association (4)] supporting the status quo. Understanding the relations between intakes of these essential fatty acids and disease prevalence over time could inform the debate. To that end, this issue of the Journal contains a report by Blasbalg et al (5) that attempts to reconstruct those intakes and, from this information, to estimate fatty acid tissue …

New Records And Ecological Remarks Regarding The Tribe Stomoxyini (Diptera: Muscidae) From Israel, Günter Müller, Jerome Hogsette, Vasiliy Kravchenko, Edita Revay, Yosef Schlein

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The Stomoxyini is a small tribe with only ten genera and 49 known species worldwide (Zumpt 1973) belonging to the Muscidae, one of the largest dipteran. Apart from feeding occasionally on nectar (Müller et al. 2011a), the adult flies of this tribe are obligate blood feeders and can easily be recognized by their conspicuous proboscis adapted for biting and sucking blood (Zumpt 1973). Several members of the tribe, especially Stomoxys and Haematobia species, are major pests of domestic livestock. Two species, Stomoxys calcitrans (Linnaeus 1758) and Haematobia irritans (Linnaeus 1758), cause billions of USD in damages annually in the cattle …

Evapotranspiration Information Reporting: I. Factors Governing Measurement Accuracy, Richard G. Allen, Luis S. Pereira, Terry A. Howell, Marvin E. Jensen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

More and more evapotranspiration models, evapotranspiration crop coefficients and associated measurements of evapotranspiration (ET) are being reported in the literature and used to develop, calibrate and test important ET process models. ET data are derived from a range of measurement systems including lysimeters, eddy covariance, Bowen ratio, water balance (gravimetric, neutron meter, other soil water sensing), sap flow, scintillometry and even satellite-based remote sensing and direct modeling. All of these measurement techniques require substantial experimental care and are prone to substantial biases in reported results. Reporting of data containing measurement biases causes substantial confusion and impedance to the advancement of …

Long-Term Water Balance And Conceptual Model Of A Semi-Arid Mountainous Catchment, G.M. Chauvin, G.N. Flerchinger, T.E. Link, Danny Marks, A.H. Winstral, M.S. Seyfried

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Long-term water balance investigations are needed to better understand hydrologic systems, especially semi-arid mountainous catchments. These systems exhibit considerable interannual variability in precipitation as well as spatial variation in snow accumulation, soils, and vegetation. This study extended a previous 10-year water balance based on measurements and model simulations to 24 years for the Upper Sheep Creek (USC) catchment, a 26 ha, snow-fed, semi-arid rangeland headwater drainage within the Reynolds Creek Experimental Watershed in southwestern Idaho, USA. Additional analyses afforded by the additional years of data demonstrated that the variability between streamflow and annual precipitation (r² = 0.54) could be …

Beneath The Surface Of Global Change: Impacts Of Climate Change On Groundwater, Timothy R. Green, Makoto Taniguchi, Henk Kooi, Jason J. Gurdak, Diana M. Allen, Kevin M. Hiscock, Holger Treidel, Alice Aureli

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Global change encompasses changes in the characteristics of inter-related climate variables in space and time, and derived changes in terrestrial processes, including human activities that affect the environment. As such, projected global change includes groundwater systems. Here, groundwater is defined as all subsurface water including soil water, deeper vadose zone water, and unconfined and confined aquifer waters. Potential effects of climate change combined with land and water management on surface waters have been studied in some detail. Equivalent studies of groundwater systems have lagged behind these advances, but research and broader interest in projected climate effects on groundwater have been …

Landform, Soil, And Plant Relationships To Nitrate Accumulation, Central Nevada, W.D. Nettleton, F.F. Peterson

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Nitrate (NO₃ ⁻¹) accumulates in Haplocambids and Torrifluvents in inset fan and fan skirt positions in central Nevada. The soils store as much as 17,600 kg of NO3 −1 N ha−1 within the upper 208 cm. This paper provides an explanation. These Holocene soils receive NO₃ ⁻¹ N from mineralization of organic matter and other NO₃ ⁻¹ N sources including snowmelt. The NO₃ ⁻¹ is delivered to soils in the first part of snowmelt in run-off from the higher surfaces. The last part of the melt and the run-off, when sufficient, serve to move the …

A Novel Monoclonal Antibody Effective Against Lethal Challenge With Swine-Lineage And 2009 Pandemic H1n1 Influenza Viruses In Mice, Hongxia Shao, Jianqiang Ye, Amy L. Vincent, Nicole Edworthy, Andrea Ferrero, Aijian Qin, Daniel R. Perez

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The HA protein of the 2009 pandemic H1N1 viruses (H1N1pdm) is antigenically closely related to the HA of classical North American swine H1N1 influenza viruses (cH1N1). Since 1998, through mutation and reassortment of HA genes from human H3N2 and H1N1 influenza viruses, swine influenza strains are undergoing substantial antigenic drift and shift. In this report we describe the development of a novel monoclonal antibody (S-OIV-3B2) that shows high hemagglutination inhibition (HI) and neutralization titers not only against H1N1pdm, but also against representatives of the α, β, and γ clusters of swine-lineage H1 influenza viruses. Mice that received a single intranasal …

Switchgrass, Kenneth P. Vogel, Gautam Sarath, Aaron J. Saathoff, Robert B. Mitchell

Department of Agronomy and Horticulture: Faculty Publications

17.1 Introduction

Switchgrass (Panicum virgatum L.) is a warm-season perennial grass that is native to North America that is being developed into a biomass energy crop. It has been used in pastures and for conservation purposes in the Great Plains and the Midwest, USA, for over 70 years.1 The research supporting its use as a pasture and conservation species was largely conducted by US Department of Agriculture (USDA) research programs, most notably the Agricultural Research Service (ARS) project located at the University of Nebraska-Lincoln and USDA Plant Materials Centers that are located throughout the United States. In this report, …

Identification Of A Second Asian Soybean Rust Resistance Gene In Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, Kerry F. Pedley

Department of Agronomy and Horticulture: Faculty Publications

Asian soybean rust (ASR) is an economically significant disease caused by the fungus Phakopsora pachyrhizi. The soybean genes Rpp3 and Rpp?(Hyuuga) confer resistance to specific isolates of the pathogen. Both genes map to chromosome 6 (Gm06) (linkage group [LG] C2). We recently identified 12 additional soybean accessions that harbor ASR resistance mapping to Gm06, within 5 centimorgans of Rpp3 and Rpp?(Hyuuga). To further characterize genotypes with resistance on Gm06, we used a set of eight P. pachyrhizi isolates collected from geographically diverse areas to inoculate plants and evaluate them for differential phenotypic responses. …

Cytokinin-Mediated Source ⁄Sink Modifications Improve Drought Tolerance And Increase Grain Yield In Rice Under Water-Stress, Zvi Peleg, Maria Reguera, Ellen Tumimbang, Harkamal Walia, Eduardo Blumwald

Department of Agronomy and Horticulture: Faculty Publications

Drought is the major environmental factor limiting crop productivity worldwide. We hypothesized that it is possible to enhance drought tolerance by delaying stress-induced senescence through the stress-induced synthesis of cytokinins in crop-plants. We generated transgenic rice (Oryza sativa) plants expressing an isopentenyltransferase (IPT) gene driven by PSARK, a stress- and maturation-induced promoter. Plants were tested for drought tolerance at two yield-sensitive developmental stages: pre- and post-anthesis. Under both treatments, the transgenic rice plants exhibited delayed response to stress with significantly higher grain yield (GY) when compared to wild-type plants. Gene expression analysis revealed a significant shift in expression of hormone-associated …

Evaluation Of Hha And Hha Sepb Mutant Strains Of Escherichia Coli O157:H7 As Bacterins For Reducing E. Coli O157:H7 Shedding In Cattle, Vijay K. Sharma, Evelyn A. Dean-Nystrom, Thomas A. Casey

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Escherichia coli O157:H7 colonizes cattle intestines by using the locus of enterocyte effacement (LEE)- encoded proteins. The induction of systemic immune response against LEE-encoded proteins, therefore, will prove effective in reducing E. coli O157:H7 colonization in cattle. The previous studies have demonstrated that a hha (encodes for a hemolysin expression modulating protein) deletion enhances expression of LEE-encoded proteins and a sepB (encodes an ATPase required for the secretion of LEE-encoded proteins) deletion results in intracellular accumulation of LEE proteins. In this study, we demonstrate the efficacy of the hha and hha sepB deletion mutants as bacterins for …

The Ability Of Selected Pupal Parasitoids (Hymenoptera: Pteromalidae) To Locate Stable Fly Hosts In A Soiled Equine Bedding Substrate, Jimmy B. Pitzer, Phillip E. Kaufman, Christopher Geden, Jerome A. Hogsette

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The ability of Spalangia cameroni Perkins, Spalangia endius Walker, and Muscidifurax raptorellus Kogan and Legner to locate and attack stable fly hosts was evaluated under laboratory conditions. Postfeeding third-instar stable fly larvae were released and allowed to pupate in two arena types: large 4.8 liter chambers containing a field-collected, soiled equine bedding substrate; or 120-ml plastic cups containing wood chips. At the time of fly pupariation, parasitoids were released and permitted 72 h to locate and attack hosts. On average, parasitism rates of freely accessible stable fly pupae in cups were not significantly different between parasitoid species. However, parasitism rates …

New Records For The Horse Fly Fauna (Diptera: Tabanidae) Of Jordan With Remarks On Ecology And Zoogeography, Günter Müller, Jerome Hogsette, Edita Revay, Vasiliy Kravchenko, Andrey Leshvanov, Yosef Schlein

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The horse fly fauna (Diptera: Tabanidae) of Jordan is, after Israel, the richest in the Levant, with 24 known species. During the 20-year project “The Ecology and Zoogeography of the Lepidoptera of the Near East,” we regularly collected blood-feeding flies, resulting in 11 additional species of Tabanidae for Jordan. The new records are: Atylotus quadrifarius (Loew, 1874), Chrysops caecutiens (Linnaeus, 1758), Dasyrhamphis nigritus (Fabricius, 1794), Haematopota pallens Loew, 1871, Nemorius irritans (Ricardo, 1901), Philipomyia graeca (Fabricius, 1794), Tabanus cordiger Meigen, 1820, Tabanus taeniola Palisot de Beauvois, 1806, Tabanus quatuornotatus Meigen, 1820, Tabanus separatus Effllatoun, 1930, and Tabanus spectabilis Loew, 1858. …

Vector Competence Of The Stable Fly (Diptera: Muscidae) For West Nile Virus, Michael S. Doyle, Bethany N. Swope, Jerome A. Hogsette, Kristen L. Burkhalter, Harry M. Savage, Roger S. Nasci

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

In 2006-2007, stable flies, Stomoxys calcitrans (L.) (Diptera: Muscidae), were suspected of being enzootic vectors of West Nile virus (family Flaviviridae, genus Flavivirus, WNV) during a die-off of American white pelicans (Pelecanus erythrorhynchos Gmelin) (Pelecanidae) in Montana, USA. WNV-positive stable flies were observed feeding en masse on incapacitated, WNV-positive pelicans, arousing suspicions that the flies could have been involved in WNV transmission among pelicans, and perhaps to livestock and humans. We assessed biological transmission by infecting stable flies intrathoracically with WNV and testing them at 2-d intervals over 20 d. Infectious WNV was detected in fly bodies …

Dietary Wheat Germ Oil Influences Gene Expression In Larvae And Eggs Of The Oriental Fruit Fly, Thomas A. Coudron, Chiou Ling Chang, Cynthia L. Goodman, David Stanley

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Changes in animal nutrition, particularly essential dietary components, alter global gene expression patterns. Our goal is to identify molecular markers that serve as early indicators of the quality of insect culture media. Markers of deficient culture media will increase the efficiency of developing optimal systems for mass rearing beneficial insects and some pest species because decisions on culture media quality can be made without waiting through one or several life cycles. The objective of our current study is to discover molecular markers of essential dietary lipid deficiency in the oriental fruit fly, Bactrocera dorsalis. We reared groups of fruit …

Uncertainty In Modelling Of Faecal Coliform Overland Transport Associated With Manure Application In Maryland, A. K. Guber, Y. A. Pachepsky, A. M. Yakirevich, D. R. Shelton, A. M. Sadeghi, D. C. Goodrich, C. L. Unkrich

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Concerns for microbial safety of surface water facilitate development of predictive models that estimate concentrations and total numbers of pathogen and indicator organisms leaving manure-fertilized fields in overland flow during runoff events. Spatial variability of bacterial concentrations in applied manure introduces high uncertainty in the model predictions. The objective of this work was to evaluate the uncertainty in model predictions of the manure-borne bacteria overland transport caused by limited information on the spatial distribution of bacteria in surface-applied manure. Experiments were carried out at the ARS Beltsville experimental watershed site (OPE3) in Maryland. Dairy bovine manure was applied at a …

Conservation Reserve Enhancement Program Nebraska Platte-Republican Resources Area

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Overview

Benefits

Goals

Program Cost

Eligible Areas and Eligibility Requirements

Approved Conservation Practices

Acreage Limitations

Sign-up and Contract Duration

CREP Payments

CREP and CRP

For More Information

Outcrossing And Crossbreeding Recovers Deteriorated Traits In Laboratory Cultured Steinernema Carpocapsae Nematodes, John M. Chaston, Adler R. Dillman, David I. Shapiro-Ilan, Anwar L. Bilgrami, Randy Gaugler, Keith R. Hopper, Byron J. Adams

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The nematode Steinernema carpocapsae infects and kills many pest insects in agro-ecosystems and is commonly used in biocontrol of these pests. Growth of the nematodes prior to distribution for biocontrol commonly results in deterioration of traits that are essential for nematode persistence in field applications. To better understand the mechanisms underlying trait deterioration of the efficacy of natural parasitism in entomopathogenic nematodes, we explored the maintenance of fitness related traits including reproductive capacity, heat tolerance, virulence to insects and ‘tail standing’ (formerly called nictation) among laboratory-cultured lines derived from natural, randomly mating populations of S. carpocapsae. Laboratory cultured nematode …