Identification Of Antibiotic Producing Soil Bacteria Against Bacillus Subtilis,
2020
Augustana College, Rock Island Illinois
Identification Of Antibiotic Producing Soil Bacteria Against Bacillus Subtilis, Morgan Brockhouse, Dr. Lori Scott
Identifying and Characterizing Novel Antibiotic Producing Microbes From the Soil
This project is a collaboration with the Tiny Earth Project Initiative (TEPI), which is a global network of educators and students focused on student-sourcing antibiotic discovery from soil. Individual strains of soil bacteria were isolated and produced antibiotic against Bacillus subtilis. Two of these samples were sequenced using the 16S rRNA gene to reveal they are very closely related to the genus Pseudomonas.
Survey Of Histoplasma Capsulatum In Bat Guano And Status Of Histoplasmosis In Slovenia, Central Europe,
2020
Research Centre of the Slovenian Academy of Sciences and Arts, Karst Research Institute
Survey Of Histoplasma Capsulatum In Bat Guano And Status Of Histoplasmosis In Slovenia, Central Europe, Janez Mulec, Saša Simčič, Tadeja Kotar, Romina Kofol, Sanja Stopinšek
International Journal of Speleology
There have been increasing reports on the presence of Histoplasma capsulatum in some European countries. The study investigated the presence of Histoplasma in bat guanos, speleologists with records of visiting Histoplasma-endemic regions and patients with histoplasmosis. A commercial ALPHA Histoplasma Antigen enzyme immunoassay was tested as an alternative methodology to detect Histoplasma in environment and compared with polymerase chain reaction (PCR) assays. The presence of Histoplasma antigen in bat guanos was not confirmed by PCR. Among 14 healthy speleologists, two were indicated as having the Histoplasma antigen in urine, but expressed negative PCR-specific results for the Histoplasma antigen. Five …
Biogeographic Study Of Human Gut-Associated Crassphage Suggests Impacts From Industrialization And Recent Expansion,
2020
University of Oklahoma
Biogeographic Study Of Human Gut-Associated Crassphage Suggests Impacts From Industrialization And Recent Expansion, Tanvi P/ Honap, Krithivasan Sankaranarayanan, Stephanie L. Schnorr, Andrew T. Ozga, Christina Warinner, Cecil M. Lewis Jr.
Anthropology Faculty Research
CrAssphage (cross-assembly phage) is a bacteriophage that was first discovered in human gut metagenomic data. CrAssphage belongs to a diverse family of crAss-like bacteriophages thought to infect gut commensal bacteria belonging to Bacteroides species. However, not much is known about the biogeography of crAssphage and whether certain strains are associated with specific human populations. In this study, we screened publicly available human gut metagenomic data from 3,341 samples for the presence of crAssphage sensu stricto (NC_024711.1). We found that crAssphage prevalence is low in traditional, hunter-gatherer populations, such as the Hadza from Tanzania and Matses from Peru, as compared to …
Biotic And Abiotic Factors Influencing Arsenic Biogeochemistry And Toxicity In Fluvial Ecosystems: A Review,
2020
Universitat de Girona
Biotic And Abiotic Factors Influencing Arsenic Biogeochemistry And Toxicity In Fluvial Ecosystems: A Review, Laura Barral-Fraga, María Teresa Barral, Keeley L. Macneill, Diego Martiñá-Prieto, Soizic Morin, María Carolina Rodríguez-Castro, Baigal-Amar Tuulaikhuu, Helena Guasch
School of Natural Resources: Faculty Publications
This review is focused on the biogeochemistry of arsenic in freshwaters and, especially, on the key role that benthic microalgae and prokaryotic communities from biofilms play together in through speciation, distribution, and cycling. These microorganisms incorporate the dominant iAs (inorganic arsenic) form and may transform it to other arsenic forms through metabolic or detoxifying processes. These transformations have a big impact on the environmental behavior of arsenic because different chemical forms exhibit differences in mobility and toxicity. Moreover, exposure to toxicants may alter the physiology and structure of biofilms, leading to changes in ecosystem function and trophic relations. In this …
Massard Prairie Restoration And Soil Microbiome Succession,
2020
University of Arkansas, Fort Smith
Massard Prairie Restoration And Soil Microbiome Succession, Jeffrey M. Shaver, Emily S. Bellis, Chizuko Iwaki, Jake Qualls, Jay Randolph, Jeremiah Smith
Journal of the Arkansas Academy of Science
We have initially sequenced soil microbial DNA from 4 restored and 4 virgin tallgrass prairie soil samples from Ben Geren Park and Massard Prairie (Fort Smith, AR), respectively. As expected, the soil microbiomes are distinct, with several lineages of nitrogen-fixing bacteria more common in virgin tall grass prairie. However, we predict that as restoration of tallgrass prairie in Ben Geren Park progresses, the soil microbiome of restored prairie will more closely mirror those of the virgin prairie.
Investigating Links Between Soil Microbial Structure And Function In Three Major Plant Communities Across Temporal Scales Of Arctic Alaska,
2020
South Dakota State University
Investigating Links Between Soil Microbial Structure And Function In Three Major Plant Communities Across Temporal Scales Of Arctic Alaska, Kaj Lynoe
Electronic Theses and Dissertations
Arctic microbial systems continue to get attention today as our understanding regarding their structure and function in a changing system is paramount to C feedbacks with warming and changes in precipitation. Plant communities and microbial community processes across the Arctic landscape are central to understanding tundra ecosystem processes because environmental conditions and plant community structure drive microbial cycling of soil organic matter. Here, we want to understand how soil microbial respiration, mineralization, biomass, and community composition are linked to three Alaskan tundra plant communities, namely Shrub, Tussock, and Sedge tundra and the seasonal variability in this system. A total of …
Developing Microbial Based Process To Produce High Value Natural Antimicrobial (Glyceollin) In Soybeans And Pullulan From Sucrose,
2020
South Dakota State University
Developing Microbial Based Process To Produce High Value Natural Antimicrobial (Glyceollin) In Soybeans And Pullulan From Sucrose, Andrea Zavadil
Electronic Theses and Dissertations
Glyceollin is a secondary metabolite produced under stress conditions by soybean to act as a plant defender to pathogen attack. The antimicrobial nature of glyceollin makes it a promising natural alternative to antibiotics if incorporated into livestock feed. However, production of glyceollin is highly variable, dependent on soybean variety, and fungal elicitor used as inoculum. Our study compares two fungal spore elicitors, Trichoderma reesei and Aspergillus sojae on soybeans of diverse maturity level, and fungal susceptibility to determine highest glyceollin titer. Spore inoculation with T. reesei elicited highest glyceollin titers of 2.42±0.20 mg/g at 120 h, while A. sojae elicited …
Genomic And Taxonomic Studies Of An Antarctic Psychrotolerant Quorum Quenching Bacterium, Planococcus Versutus L10.15t,
2020
Universiti Malaya
Genomic And Taxonomic Studies Of An Antarctic Psychrotolerant Quorum Quenching Bacterium, Planococcus Versutus L10.15t, See-Too Wah Seng
Student Works (2020-2029)
Quorum quenching (QQ) has been suggested as an alternative to antibiotic treatments for pathogenic infections as it does not affect the viability of the pathogen and imposes minimum selection pressure promoting drug resistance. During an ecological survey for quorum quenching (QQ) bacteria from soil collected in Lagoon Island (Ryder Bay, Adelaide Island, Antarctica), a bacterial strain was isolated and identified as Planococcus species, L10.15T, based on 16S rRNA gene analysis. The genomic, phylogenetic, chemotaxonomic and phenotypic data obtained showed that L10.15T represents a novel species for which the name Planococcus versutus sp. nov. is proposed. Previously, QQ activity of L10.15T …
Survival Of Enterococcus FaeciumIn Turkey Litter Under Different Temperature And Moisture Combinations,
2020
Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, Department of Biological Sciences, James Madison University, Harrisonburg, VA 22807
Survival Of Enterococcus FaeciumIn Turkey Litter Under Different Temperature And Moisture Combinations, Steven G. Mcbride, Benjamin Holland, Pradeep Vasudevan, Joanna B. Mott
Virginia Journal of Science
Untreated poultry litter introduces a substantial load of fecal pathogens to the environment, impacting agriculture, public health and ecosystem function. There is substantial evidence that temperature and moisture are the primary drivers of fecal bacteria survival across ecosystems. However, both temperature and moisture effects have been shown to be modulated by the matrix in which the fecal bacteria are living. This context dependence highlights the importance of understanding fecal bacteria survival in a variety of matrices in order to implement effective waste management plans. In this study, we determined the survival patterns of Enterococcus faecium in post-use turkey litter under …
Isothermal Environmental Heat Energy Utilization By Transmembrane Electrostatically Localized Protons At The Liquid-Membrane Interface,
2020
Old Dominion University
Isothermal Environmental Heat Energy Utilization By Transmembrane Electrostatically Localized Protons At The Liquid-Membrane Interface, James Weifu Lee
Chemistry & Biochemistry Faculty Publications
This study employing the latest theory on transmembrane electrostatic proton localization has now, for the first time, consistently elucidated a decades-longstanding bioenergetic conundrum in alkalophilic bacteria and more importantly discovered an entirely new feature: isothermal environmental heat utilization by electrostatically localized protons at the liquid-membrane interface. It was surprisingly revealed that the protonic motive force (equivalent to Gibbs free energy) from the isothermal environmental heat energy utilization through the electrostatically localized protons is not constrained by the overall energetics of the redox-driven proton pump system because of the following: (a) the transmembrane electrostatically localized protons are not free to move …
Extracting Secondary Metabolites From Bacterial Endophytes To Suppress Or Promote Sweet Sorghum And Weeds,
2020
University of Kentucky
Extracting Secondary Metabolites From Bacterial Endophytes To Suppress Or Promote Sweet Sorghum And Weeds, Mohammad R. Alsabri
Theses and Dissertations--Plant and Soil Sciences
Endophytic bacteria are ubiquitous in agricultural settings and have the potential to drastically affect plant growth both positively and negatively. These complex relationships play a key role in plant nutrition and are therefore of great interest to the agricultural community and beyond. With my dissertation work, I have had the opportunity to examine the relationship between endophytic bacteria and plants in various ways. The first part of my dissertation investigated how the microbial diversity found in soil affects the below- and above-ground traits of Sorghum bicolor. In the second section, I focused on a particular strain of bacteria that …
The Value Of Patient-Provider Interactions In Orthopedic Settings: An Evidence-To-Practice Review,
2020
University of South Carolina, Columbia, SC
The Value Of Patient-Provider Interactions In Orthopedic Settings: An Evidence-To-Practice Review, Matthew S. Panetta, Carly J. Wilson, Zachary Winkelmann
Clinical Practice in Athletic Training
Clinical outcomes are influenced by specific physical therapy interventions and several nonspecific factors associated with the healthcare professional, patient, and setting. The relationship built between patients and providers is based on treatment outcomes is referred to as the patient-provider interaction, which is a nonspecific factor. The purpose of this review was to investigate patients’ and clinicians’ perceptions of factors that influence patient-provider interactions. Eleven different databases were accessed as potential research sources. Thirteen qualitative studies were selected that examined the perceptions of non-specific factors which impact the patient-clinician relationship as well as the perceptions that healthcare providers and patients in …
Microbial Degradation Of Urea Oligomers: Potential Slow Release Nitrogen Fertilizers,
2020
Hamline University
Microbial Degradation Of Urea Oligomers: Potential Slow Release Nitrogen Fertilizers, Maddy Bygd
Departmental Honors Projects
Urea is the most commonly used nitrogen compound in fertilizers across the world. It provides the most nitrogen at the lowest cost. However, with the size and solubility of this compound, it is easily washed out of the soil. This results in the need to continuously add fertilizer to fields, creating adverse effects on the environment due to nitrogen runoff and leading to increased expenses for farmers. Triuret, a urea oligomer, is a compound with promising potential for use as a nitrogen source, providing a slower release of nitrogen into the soil. It is hypothesized that this compound can be …
Diversity Analysis Of Soil Fungus Communities In Disturbed, Nursery, And Mature Forest Conditions,
2020
Central Washington University
Diversity Analysis Of Soil Fungus Communities In Disturbed, Nursery, And Mature Forest Conditions, Dana Whitmore
All Master's Theses
Populations of soil fungi were examined in Derby Canyon Natives, Coeur d’Alene Forest Service nursery, Swamp Lake, and the Keechelus Lake wildlife overcrossing soils. All sampling sites were connected by their relation to the revegetation and native soil plug inoculation of the wildlife overpass. This study was an effort to describe soil fungi communities present on the overpass before plant introduction, those that plants would be bringing in their pots, and the fungi that could be introduced via soil plug transplantation. DNA was extracted from soil samples, then sequenced using next-generation sequencing methods, allowing for the analysis of species richness …
The Host Gatekeeper: Using The Flagellar Pathway To Understand Symbiont Host Adaptation,
2020
West Virginia University
The Host Gatekeeper: Using The Flagellar Pathway To Understand Symbiont Host Adaptation, Adam R. Pollio
Graduate Theses, Dissertations, and Problem Reports (ETD)
The acquisition of microbial partners is a strategy used by a diverse group of arthropods to overcome ecological barriers that might normally make certain niches uninhabitable. The unique phylogenetic opportunities attainable from the natural experiment of the Sodalis-allied clade allow for better understanding of how molecular structures evolve through time. Here, we focus on the evolution of the flagellar synthesis pathway, due to its complexity and ability to diverge in response to ecological pressures. We used this molecular pathway and natural experiment to show that normal evolutionary outcomes associated with symbiosis (i.e., genome reduction) do not explain the predicted conservation …
Genetic And Biochemical Characterization Of Ergot Alkaloid Synthesizing Fungi And Their Symbionts,
2020
West Virginia University
Genetic And Biochemical Characterization Of Ergot Alkaloid Synthesizing Fungi And Their Symbionts, Matthew Duane Maust
Graduate Theses, Dissertations, and Problem Reports (ETD)
Ergot alkaloids are fungal tryptophan derived toxins which affect mammalian circulation and neurotransmission. These compounds are biosynthesized by a conserved genetic pathway, known as the ergot alkaloid synthesis (EAS) pathway by fungi belonging to the ascomycete families Trichocomaceae and Clavicipitaceae. Several Ipomoea species and related plants in the morning glory family harbor vertically transmitted symbiotic fungi in the genus Periglandula, also members of Clavicipitaceae, that produce ergot alkaloids. Metabolomic analysis of seeds identified a previously uncharacterized glycoside form of the pharmaceutically important ergot alkaloid, ergonovine. Several species belonging to the fungal genus Metarhizium have recently been shown to have the …
Determination Of Iron-Reducing Bacterial Activities In Lake Sediments.,
2020
The University of Akron
Determination Of Iron-Reducing Bacterial Activities In Lake Sediments., Alexandra Kahn
Williams Honors College, Honors Research Projects
Algal blooms are growing rampantly in lacustrine systems due to an increase of phosphorus, a nutrient for algae. Phosphorus is being released into the environment causing overpopulation and eutrophication which damages the ecosystem. The availability of phosphorus is affected by the solubility of iron which is regulated through iron reducing and iron oxidizing bacteria. Phosphorus adheres to insoluble Fe(III), which prohibits algae from utilizing it, while phosphorus does not attach to soluble Fe(II) and therefore it remains available to algae. The purpose of this study was to determine how bacteria influence iron solubility and what are the ideal environmental conditions …
The Effects Of Staining Cyanobacteria With Sytoxgreen After Lysis By Freeze-Thaw And Lysis By Ethanol,
2020
The University of Akron
The Effects Of Staining Cyanobacteria With Sytoxgreen After Lysis By Freeze-Thaw And Lysis By Ethanol, Samantha Galambos
Williams Honors College, Honors Research Projects
The purpose of this project is to find the effects of staining toxic cyanobacteria with SYTOXGreen after lysis by freeze-thaw and lysis by ethanol. This project will focus on two strains of toxic cyanobacteria known as Aphanizomenon - A. flos-aquae and Planktothrix - P. agardhii. The live and dead cells are observed under blue and red fluorescent light to show the effectiveness of each lysis. It is important that this topic is researched because it is significantly affecting our waterways and sometimes drinking water. We often see that you cannot swim in Lake Erie due to algae, more specifically, these …
Comparison Of Fe(Iii) Reduction Rates By Iron-Reducing Bacteria Within Sub Muros Samples From Quadrilátero Ferrífero Iron-Ore Caves, Brazil,
2020
The University of Akron
Comparison Of Fe(Iii) Reduction Rates By Iron-Reducing Bacteria Within Sub Muros Samples From Quadrilátero Ferrífero Iron-Ore Caves, Brazil, Summer Ellis
Williams Honors College, Honors Research Projects
Previous research investigating the speleogenesis of iron-ore caves (IOC) in the Quadrilátero Ferrífero, or “Iron Quadrangle,” of Brazil suggests that microbial iron reduction and subsequent dissolution of the surrounding Fe(III) rich rocks is responsible for cave formation. A soft intra-wall substance (sub muros) containing iron-reducing bacteria (FeRB) was discovered underneath the durable crusts of cave walls. The goal of the study was to determine if reduction rates were comparable between sub muros samples, while additionally observing how different electron donors affect microbial iron reduction. To do this, I compared Fe(III) reduction rates between sub muros samples collected from …
Microbial Responses To Unconventional Oil And Gas Development May Alter Ecosystem Function In Headwater Streams,
2020
West Virginia University
Microbial Responses To Unconventional Oil And Gas Development May Alter Ecosystem Function In Headwater Streams, Rachel Michaels
Graduate Theses, Dissertations, and Problem Reports (ETD)
The demand for natural gas, and the need for efficient extraction, has led to the development of unconventional oil and natural gas (UOG) techniques. Due to the novelty of UOG, the potential impacts to freshwater ecosystems are not fully understood. We used a dual pronged approach to study the effects of UOG development on microbial biodiversity and function via a laboratory microcosm experiment and a survey study of streams with and without UOG development within their watersheds. The laboratory microcosm study simulated stream contamination with produced water, a byproduct of UOG operation, using sediment collected from one high water-quality stream …
