Aquaculture and Fisheries Commons^™

One Rung At A Time: Climbing The Ladder Toward Aquatic Connectivity In Eastern South Dakota, Evan Spencer

Electronic Theses and Dissertations

Roads and streams are synonymous with their connection to movement, the acquisition of resources, and as pathways to new opportunities. However, the factors that define good roads and ecologically connected streams are rarely without conflict. Road infrastructure at stream-road crossings has the potential to fragment stream networks. Tube culverts, where streams pass under the road through metal pipes, are particularly concerning for stream connectivity. Undersized, aging, or inappropriately installed culverts can develop vertical drops at the outflow due to high velocities and stream bed scouring. The outlet drop can function as a barrier, preventing the upstream movement of fish. Due …

Spatiotemporal Habitat Use, Sex-Specific Movement, And Site Fidelity Of Walleye In Lake Sharpe, Sd, Carter S. Dollen

Electronic Theses and Dissertations

Walleye Sander vitreus are a popular sportfish among anglers in South Dakota with large economic impacts to local communities. A popular destination for Walleye anglers is Lake Sharpe, a 25,000-ha reservoir on the Missouri River, in central South Dakota. Gill net catches in Lake Sharpe show high annual variation, prompting concern that gill net catch rates may be poorly related to population abundance. A better understanding of Walleye movement and distribution could lead to increased precision in annual abundance estimates and improved active management that increases angler success. The goals of this study were: 1) determine spatiotemporal movement patterns of …

The Effect Of Bait Types On Catch Performance In The Vietnamese Swimming Crab Trap Fishery, Nghiep K. Vu, Khanh Q. Nguyen, Luong T. Nguyen

Journal of Marine Science and Technology–Taiwan

Trapping is a primary fishing method to capture swimming crab species along the coast of Vietnam, because it has low ecological and environmental impacts. In trap fisheries, bait plays a primary role in determining the effectiveness of the gear and is one of the largest operational costs. Fishermen determine bait types based on their experience and what they can find, where trash fish caught by trawl fisheries is preferred and commonly used. However, the catch rates of swimming crab traps are typically low and highly variable and thus, there is considerable interest to improve the catchability. This study examined the …

Exploring Coastal Plain Fish Ecology Across A Range Of Early-Life-History Traits And River Types, Bridgette Nicolosi

College of Graduate Studies: Theses & Dissertations

The ecological complexity of southeastern Coastal Plain rivers is reflected in the diversity of fish communities they support, yet the processes structuring early life dynamics remain poorly understood. This thesis explores the influence of environmental gradients on larval fish assemblage composition and American Shad (Alosa sapidissima) spawning phenology across two Georgia Coastal Plain river systems.

In the unregulated Ogeechee River, I investigated spatial and temporal variation in larval fish communities by comparing mainstem and tributary habitats to understand the role of tributaries in watershed-wide larval production. Larvae were collected biweekly from May to September 2024 at eight paired mainstem-tributary sites …

Addressing The Productivity-Susceptibility Analysis In Data-Limited Fisheries For Understudied Fish In The Marine Aquarium Trade, Alice Wynn, Jemelyn Baldisimo, Gabrielle Baillargeon, Michael Tlusty, Andrew Rhyne

Biological Sciences Faculty Publications

The marine aquarium trade (MAT) harvests millions of coral reef fishes from the wild yearly. While the MAT supports fishers, hobbyists and marine education, harvested fishes are crucial in maintaining coral reef health and balanced marine cycles within their native habitats. Understanding the impact of the MAT on fish populations is critical for sustaining the trade in the long-term. Productivity-susceptibility analyses (PSAs) offer semiquantitative methods of analyzing the productive capacity of each fish stock, as well as its susceptibility to overfishing. The present study revises and expands upon a PSA conducted by Baillargeon et al. (2020) that focused on 32 …

Squid Paralarvae Turn With High Agility Using Jets Near The Reynolds Number Threshold For Viscous Domination, Ian K. Bartol, Alissa M. Ganley, Paul S. Krueger, Joseph T. Thompson

Biological Sciences Faculty Publications

Turning is critical for survival in the ocean, as marine animals need to maneuver to capture prey, elude predators, and navigate complex environments. While prior research has focused on turning performance of adult swimmers, less is known about early ontogenetic stages that locomote within lower Reynolds number (Re) regimes, especially young jetters. To evaluate squid paralarval turning proficiency and the role of the pulsed jet in maneuvers, recently hatched longfin squid Doryteuthis pealeii swimming in a viewing chamber were studied using digital particle image velocimetry and kinematic motion analyses. Paralarvae exhibited a wide repertoire of turning behaviors, including those performed …

Genome-Wide Snp Analyses Reveal High Gene Flow Of Endemic Smallscale Croaker (Boesemania Microlepsis) In The Lower Mekong Basin, Quyen Dang Ha Vu, Christopher E. Bird, Oanh Thi Truong, Sang Quang Tran, Ellen E. Biesack, Amanda S. Ackiss, Kent E. Carpenter, Binh Truy Dang

Biological Sciences Faculty Publications

The Smallscale Croaker, Boesemania microlepis, is a valuable fishery resource in the Mekong River basin that lacks clear biological data to understand its basic ecology and conservation management priorities. This species is common in the southernmost floodplain of the Mekong which extends from Tonlé Sap in Cambodia to the Mekong Delta in Vietnam. This floodplain is of particular biodiversity conservation concern because of the many upstream dams that restrict water flow in an ecology that relies heavily on a flood-pulse cycle. The literature regarding the biology B. microlepis in this region contains conflicting ideas that populations are both highly …

Effects Of Insect Meals On Fish Digestibility, Blood Parameters, And Economic Performance: A Meta-Analysis, M. A. Aaqillah-Amr, A. Hidir, M. Ikhwanuddin, N. A. Fatan, R. Muhammad-Rahimi, S. Ning-Shahira, R. G.N. Siankhe, G. W. Vandenberg, C. M. Tanga, R. Yossa

All Peer-Reviewed Publications

This review examines the use of insect meal (IM) as a substitute for fishmeal (FM) in fish feeds within the past decade. While global interest in this alternative is growing, research on its effects on fish digestibility, blood parameters, and economic performance has been limited. Meta-analysis on the apparent digestibility coefficient revealed a negative effect summary on dry matter (0.92) and crude lipid (0.51), although the difference between the two groups was relatively minor. However, a positive effect summary was reported in the apparent digestibility of crude protein (0.12), suggesting a potential advantage in the utilization of protein by fish …

Mapping Global Research On Mycotoxins In Aquafeed From Scientometric And Critical Perspectives, Menaga Meenakshisundaram, Sudarshan Shanmugam, Jimmy B. Mboya, Felix Sugantham, Kevin Obiero, Jonathan Munguti, Sunday Ekesi, Sevgan Subramanian, Shaphan Y. Chia, Dennis Beesigamukama, Rodrigue Yossa, Chrysantus M. Tanga

All Peer-Reviewed Publications

The global significance of mycotoxins in aquaculture is evident. However, regional vulnerabilities, effects, and inconsistent regulations on mycotoxin contamination remain underexplored. This study integrates a scientometric analysis of research on mycotoxins in aquafeed, published from 1992 to 2023 in Web of Science, with a conventional review of their occurrence in aquafeed and feed ingredients. Bibliometric tools, VOSviewer, and biblioshiny, were used to analyze global research trends, collaborations, and themes. We found a total of 181 publications, authored by 938 researchers from 49 countries, with Brazil leading (25 publications). The Toxins journal accounted for the most publications (23). Aflatoxins, particularly aflatoxin …

Unraveling The Potential Of Black Soldier Fly Larvae As A Sustainable Protein Source For Nile Tilapia Production In Diverse Aquaculture Systems, Jonathan Munguti, Mavindu Muthoka, Jimmy B. Mboya, Domitila Kyule, Menaga Meenakshisundaram, Chrysantus M. Tanga

All Peer-Reviewed Publications

Aquaculture plays a critical role in global food security, with Nile tilapia (Oreochromis niloticus) recognized for its adaptability and robust growth. However, traditional feeds, heavily reliant on fishmeal (FM) and soybean meal, face economic and environmental challenges. In response, black soldier fly larvae meal (BSFLM) has emerged as a promising, nutrient-dense alternative. This review synthesizes existing literature on BSFLM’s nutritional profile and its suitability for Nile tilapia diets, while acknowledging that the data come from diverse independent studies conducted under varying environmental conditions and husbandry practices. BSFLM consistently provides high-quality protein (29.9%–48.2%), aligning with tilapia’s requirements, and is rich in …

Marine And Freshwater Habitats Used By Sympatric Anadromous Arctic Char (Salvelinus Alpinus) And Dolly Varden (S. Malma Malma) In The Central Canadian Arctic, Simon W. Depasquale Mr.

Theses and Dissertations (Comprehensive)

Two closely related but distinct species of char, Arctic Char (Salvelinus alpinus) and Dolly Varden (S. malma), are critically important to the food security and culture of Indigenous peoples in northern North America. Subsistence Inuit fishers in Kugluktuk, NU, Canada, have noticed changes in the timing and locations of their catches of char in the past ~ 10 years. In response, an ongoing partnered research program between the Kugluktuk Hunters and Trappers Organization (HTO) and scientists was formed to study Arctic Char and northern form Dolly Varden (S. malma malma). Char research near Kugluktuk presents a unique opportunity to further …

From Sequencing To Conservation: Genomic Analysis Of Three Sportfish Species In West Virginia, Andrew Johnson

Graduate Theses, Dissertations, and Problem Reports (ETD)

Situated in the Appalachian Mountains, one of the oldest mountain ranges on Earth, West Virginia waters boast rich ichthyofauna including native sportfish species walleye (Sander vitreus), largemouth bass (Micropterus nigricans), and muskellunge (Esox masquinongy). These three species are all native to the contemporary Ohio River watershed and play a major recreational and ecological role in local fisheries. Ecologically, all three species are apex predators and play a key role in ecosystems by directly influencing local fish assemblages. As dominant apex predators all three species are highly sought after in recreational fisheries with largemouth bass …

Effects Of Environmental And Anthropogenic Gradients On Fish Beta Diversity In Central Appalachian Streams, Alanna Kaylee Lowther Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Understanding the environmental and spatial drivers of community composition is essential for conserving freshwater biodiversity. We examined how environmental gradients, land cover, and spatial structure influence fish beta diversity in wadeable streams across West Virginia, USA. We quantified total beta diversity and partitioned it into species replacement and richness difference components and used local contributions to beta diversity (LCBD) to identify compositionally unique sites. Community–environment relationships were evaluated with distance-based redundancy analysis (dbRDA), and a beta regression GLMM was used to test how elevation, slope, land cover, and stream order (factor) predicted LCBD while accounting for spatial structure (dbMEMs) and …

Ocean Acidification Mitigation: Potential Expansion Of Sav Restoration Strategy In The Chesapeake Bay, Cree N. Taylor

Undergraduate Research Posters

Zostera marina is a species of marine macrophyte that has been largely prioritized in past submerged aquatic vegetation (SAV) restoration initiatives within the Chesapeake Bay because of its 1) previous abundance, 2) demonstrated carbon burial abilities, and 3) observed ability for meadows of Z. marina to ameliorate low pH conditions. Due to the temperature variability and poor water quality associated with anthropogenic disturbances in the Chesapeake Bay, Z. Marina beds have experienced several die-off events with limited capacity for regrowth. This systematic review explored the possible benefits of focusing future SAV recovery initiatives on ensuring a diverse variety of SAV …

Bioresource Management Via Least Cost Feed Formulation For Red Tilapia (Oreochromis Sp.): Application Of Linear Programming Technique, Boudjema Kamel, Redhouane Benfares, Affaf Kord, Toufik Milla, Belkacem Guenachi, Lynda Frai, Rachida Itcher, Hocine Kherzane

Journal of Bioresource Management

The method of linear programming (LP) was utilized to determine the relationship between the composition of nutrients of each ingredients, specifications for raw materials, cost and requirements for nutrients of the red tilapia (Oreochromis sp.), in order to define: (1) least cost ration formulation, (2) least cost diet, (3) minimum price of producing a particular diet after meeting a number of requirements. The resulting LP models were solved using the simplex algorithm. Therefore, our results show that, formulated feed had high protein content (31.92 %), Lipid (2.53), Moisture (9.10 %) and Ash (9.00 %). The utilization of diet …

A Meta-Analysis Of Seafood Species Mislabeling In The United States, Sarah Ahles, Christina A. Mireles Dewitt, Rosalee S. Hellberg

Food Science Faculty Articles and Research

Seafood is vulnerable to mislabeling due to complex global supply chains, varying prices, and the similar appearance of species. While numerous studies have been published on seafood mislabeling, the focus is often on species known to be commonly substituted. Therefore, the overall mislabeling rates of seafood sold in the U.S. remain unknown, especially for the most consumed species. The objective of the current study was to compile the results of seafood mislabeling studies into a single resource to provide informative statistics on U.S. seafood mislabeling. A meta-analysis was conducted on U.S. seafood mislabeling studies that tested commercial samples of bony …

Social Learning And Cultural Enrichment For Fish Welfare, Chiawen Chiang, Becca Franks

Animal Sentience

This commentary examines how understanding animal culture—shared behaviors and knowledge transmitted through social learning—plays a role in advancing welfare practices for captive fishes. Despite extensive evidence of fishes' complex sociocultural capacities, their psycho-social needs remain underestimated and unmet in zoos and aquaria. We explore what considering fish culture might mean for welfare practices: diverse social learning opportunities, cultural development, and thoughtful group management. More knowledge about wild fishes' lives will help bridge the gap between their full, complex lives and current captive welfare practices.

Using Bivalves As An Indicator For Fecal Bacteria, Kamala Chuss

Honors Scholar Theses

This project focuses on the integration of fecal bacteria from warm-blooded animals into bivalve tissue, and the utilization of bivalves as an indicator for fecal bacteria in waterways. Bivalves may give a more representative long-term average of fecal bacteria in water as compared to direct water testing. The primary objective is to create a standard operating procedure to use bacterial testing of bivalves as a proxy for bacteria concentration in the water. This method can be used in places where bivalves do not already exist by adding them to a body of water, or by collecting bivalves that already exist …

Climate Change Affecting Waterfowl Migration, Destiny Fox

D.U.Quark

Climate Change is a major environmental factor in waterfowl migration patterns. Migratory waterfowl are species of birds that live in or around wetlands, mainly including lakes, streams, and marshes. Contaminated bodies of water at stopover sites during migratory seasons can lead to death among many species of waterfowl, as well as water borne diseases from snail eggs. Changing environmental factors can also lead to negative effects on the bird’s ability to forage properly. These environmental factors include the evaporation of several wetlands that have led to waterfowl foraging in local farmers’ land. Focusing more heavily on improving satellite tracking could …

Spatial Ecology Of Large Bodied Ichthyofauna In The Red River Of The North Basin, William Marshall Stuart

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding spatial patterns and processes is essential for designing research studies, implementing management actions, and planning restoration efforts. The Red River of the North basin spans a broad geographic area where jurisdictional oversight is divided among several entities (Manitoba, CAN; North Dakota, USA; Minnesota, USA; South Dakota, USA), creating a mosaic of regulatory and functional process zones. Understanding the spatial ecology of freshwater fishes in this disjointed landscape is essential to address diverse life history requirements and the movement constraints imposed by anthropogenic structures. Long-term acoustic telemetry revealed that large bodied ichthyofauna employ a diverse range of movement strategies (i.e., …