Aquaculture and Fisheries Commons^™

Marine Heatwaves Modulate The Genotypic And Physiological Responses Of Reef-Building Corals To Subsequent Heat Stress, Kristen T. Brown, Amatzia Genin, Matheus A. Mello-Athayde, Ellie Bergstrom, Adriana Campili, Aaron Chai, Sophie G. Dove, Maureen Ho, Devin Rowell, Eugenia M. Sampayo, Veronica Z. Radice

Biological Sciences Faculty Publications

Back-to-back marine heatwaves in 2016 and 2017 resulted in severe coral bleaching and mortality across the Great Barrier Reef (GBR). Encouragingly, some corals that survived these events exhibit increased bleaching resistance and may represent thermally tolerant populations that can better cope with ocean warming. Using the GBR as a natural laboratory, we investigated whether a history of minimal (Heron Island) or severe (Lizard Island) coral bleaching in 2016 and 2017 equates to stress tolerance in a successive heatwave (2020). We examined the genetic diversity, physiological performance, and trophic plasticity of juvenile (<10 cm) and adult (>25 cm) corals of two common genera ( …

Landings, Vol. 31, No. 1, Maine Lobstermen’S Community Alliance, Patrice Mccarron, Alexa Dayton, Togue Brawn, Dustin Delano, Steven Dickens, Ann Backus, Melissa Waterman

Landings: News & Views from Maine's Lobstering Community

Landings content emphasizes science, history, resource sustainability, economic development, and human interest stories related to Maine's lobster industry. The newsletter emphasizes lobstering as a traditional, majority-European American lifeway with an economic and social heritage unique to the coast of Maine. The publication focuses how ongoing research to engage in sustainable, non-harmful, and non-wasteful commercial fishing practices benefit both the fishery and Maine's coastal legacy.

For more information, please visit the Maine Lobstermen’s Community Alliance (MLCA) website.

Ancient Bears Provide Insights Into Pleistocene Ice Age Refugia In Southeast Alaska, Flavio Augusto Da Silva Coelho, Stephanie Gill, Crystal M. Tomlin, Marilena Papavassiliou, Sean D. Farley, Joseph A. Cook, Sarah A. Sonsthagen, George K. Sage, Timothy H. Heaton, Sandra L. Talbot, Charlotte Lindqvist

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

During the Late Pleistocene, major parts of North America were periodically covered by ice sheets. However, there are still questions about whether ice-free refugia were present in the Alexander Archipelago along the Southeast (SE) Alaska coast during the last glacial maximum (LGM). Numerous subfossils have been recovered from caves in SE Alaska, including American black (Ursus americanus) and brown (U. arctos) bears, which today are found in the Alexander Archipelago but are genetically distinct from mainland bear populations. Hence, these bear species offer an ideal system to investigate long-term occupation, potential refugial survival and lineage turnover. Here, we present genetic …

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …

Porifera: Biology And Medicinal Properties, Emma L. Rayfield

Undergraduate Honors Theses

The focus of this thesis is the possibility of oceanic medicine through understanding the general biology of poriferans, their symbionts, medicinal properties, and how we could harvest sponges conservatively. It was necessary to understand the basic biology of poriferans regarding their structures, differences in their classes, and how they obtain nutrition, develop, and reproduce. The ecology of the poriferans was also researched including their larval and sessile stages and how their environment determines where they settle. Additionally, ecology was examined including how poriferans interact with symbionts and other organisms. This then was utilized to seek whether poriferans had useful medical …

Surveillance And Monitoring Of Amphibian Pathogens And Evaluating The Impacts Of An Associated Course-Based Undergraduate Research Experience (Cure), Jennifer Perez

EWU Masters Thesis Collection

Amphibians are a highly diverse class of vertebrates and crucial for natural ecosystems, inhabiting both aquatic and terrestrial environments at different life stages. However, amphibians are facing devastating declines largely due to the disease chytridiomycosis, caused by the fungal pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal). This disease can lead to population declines, biodiversity loss, and species extinction. However, resources to study and mitigate this disease are limited and an opportunity to assist in these efforts has been created in the form of a course-based undergraduate research experience (CURE). Chapter 1 of my thesis used Roger's Diffusion of Innovations …

Fairy Shrimp (Anostraca) In The Vernal Pools Of Eastern Washington, Megan Garvey

EWU Masters Thesis Collection

Vernal pools are ephemeral wetlands that retain water annually from winter and spring precipitation and snowmelt but are dry the rest of the year. Though important habitats and sources of freshwater biodiversity, they are little accounted for in wetland conservation and restoration practices. Like much of the world’s wetlands, they have seen a significant decline from anthropogenic impacts and conversion for alternative land use. Pools are also at significant risk due to the impacts of climate change and invasive species. These small temporary water bodies perform vital ecosystem services and are host to rare and endemic species. Anostraca, or fairy …

Hard-Bottom Habitats Support Commercially Important Fish Species: A Systematic Review For The North Atlantic Ocean And Baltic Sea, Hugo Flávio, Rochelle D. Seitz, David Eggleston, Jon C. Svendsen, Josianne Støttrup

VIMS Articles

Hard-bottom habitats span a range of natural substrates (e.g., boulders, cobble) and artificial habitats (e.g., the base of wind turbines, oil platforms). These hard-bottom habitats can provide a variety of ecosystem services, ranging from the enhancement of fish biomass and production to providing erosion control. Management decisions regarding the construction or fate of hard-bottom habitats require information on the ecological functions of these habitats, particularly for species targeted in ecosystem-based fisheries management. This study provides a systematic review of the relationships of various hard-bottom habitats to individual commercially harvested species that are managed jointly across the Atlantic by the International …

Bioaccumulation Of Polychlorinated Biphenyl Compounds And Mercury In A Mining Impacted Aquatic Ecosystem, Michelle Bollini

Dissertations, Master's Theses and Master's Reports

The Keweenaw area continues to be influenced by the century of copper mining that ended nearly 50 years ago. This project is focused on Torch Lake, an aquatic ecosystem that has been heavily impacted by mining waste disposal. The watershed has been impaired by mine discharge and tailings, smelter and smokestack plumes, and poor waste disposal practices. The lake is listed as a Great Lakes Area of Concern with beneficial use impairments of restrictions on fish consumption and a degraded benthic community. Polychlorinated biphenyl compounds (PCBs) and methylmercury (MeHg) are persistent, bioaccumulative, and toxic substances (PBTs). These contaminants pose threats …

Fitting Time Series Models To Fisheries Data To Ascertain Age, Kathleen S. Kirch, Norou Diawara, Cynthia M. Jones

OES Faculty Publications

The ability of government agencies to assign accurate ages of fish is important to fisheries management. Accurate ageing allows for most reliable age-based models to be used to support sustainability and maximize economic benefit. Assigning age relies on validating putative annual marks by evaluating accretional material laid down in patterns in fish ear bones, typically by marginal increment analysis. These patterns often take the shape of a sawtooth wave with an abrupt drop in accretion yearly to form an annual band and are typically validated qualitatively. Researchers have shown key interest in modeling marginal increments to verify the marks do, …

Walleye Feeding, Movements, And Energetics Reveal The Importance Of Connected Wetlands In Glacial Lakes, Logan M. Cutler

Electronic Theses and Dissertations

Fish require a variety of resources including prey, thermal refugia, and different physical habitat characteristics to grow and reproduce. All necessary resources are rarely provided by a single habitat, resulting in tradeoffs between occupying different habitats; therefore, the ability to move among heterogenous habitats is critical. These tradeoffs may occur in lakes with connected wetlands where the main lake habitats tend to be more thermally stable, but wetlands often provide more diverse and abundant prey. For my second chapter, I compared prey diversity and abundance as well as Walleye (Sander vitreus) diets and condition in a large glacial lake (Lake …

Effects Of Dietary Genistein And Fugacity Modelling In An Aquaculture System, Travis Schaeffer

Electronic Theses and Dissertations

Fish production from aquaculture has continued to grow over the past several decades, with finfishes being fed formulated, fish meal-based diets supporting most of that industry’s growth. However, increased demand and costs, coupled with static volume and erratic supplies of fish meal, has resulted in the use of alternative plant-derived protein sources. A common oilseed protein source is soybean meal (SBM), because of its protein content and amino acid profile; however, it also contains multiple anti-nutritional factors, including phytoestrogens. Phytoestrogens are naturally produced, estrogenmimicking compounds, with isoflavones receiving the most investigation as higher levels of these compounds occur within SBM. …

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells

Cal Poly Humboldt Capstone Honor Roll

This report details a study assessing the fish assemblages of a recently restored estuarine salt marsh site, and a similar unrestored and impacted site along the Eel River estuary. These two sites are located within the Eel River (Wiya’t) estuary, roughly 10 miles west of the city of Fortuna, CA. This study was conducted during the months of September through October 2023. Data collection was done through seine net dragging at randomly selected sample points across both sites. Seine net hauls were recorded by species and species count, which were later computed using a diversity index to provide values representative …

Estimation Of Juvenile Striped Bass Relative Abundance In The Virginia Portion Of Chesapeake Bay Annual Progress Report: 2022 - 2023, Jack R. Buchanan, Mary C. Fabrizio, Troy D. Tuckey

Reports

The 2022 juvenile Striped Bass abundance index was 7.95 and was not significantly different than the reference mean of 7.77 for the period 1980 to 2009. Abundance indices were average in the York and Rappahannock rivers and below average in the James River in 2022 compared with the river-specific reference means (1980-2009). Relatively low catches of young‐of‐the‐year Striped Bass from sites upriver and downriver of core nursery areas suggest juvenile Striped Bass largely remained within core nursery areas in 2022.

Indices of abundance were also calculated for three additional economically and recreationally important fishes in Virginia waters. Juvenile White Perch …

2023 Annual Report: Estimating Relative Juvenile Abundance Of Ecologically Important Finfish In The Virginia Portion Of Chesapeake Bay, Troy D. Tuckey, Mary C. Fabrizio

Reports

The VIMS Juvenile Fish Trawl Survey provides crucial data to state, regional, and national fisheries management agencies, including the Virginia Marine Resources Commission (VMRC), the Atlantic States Marine Fisheries Commission (ASMFC), the Mid-Atlantic Fisheries Management Council (MAFMC), and the National Marine Fisheries Service (NMFS). Annual indices of juvenile abundance have been generated from trawl survey data for species of key recreational and ecological importance in the Virginia portion of Chesapeake Bay. These include Spot, Atlantic Croaker, Weakfish, Summer Flounder, Black Sea Bass, Scup, Striped Bass, White Perch, White Catfish, Channel Catfish, Blue Catfish, Silver Perch, American Eel, and Bay Anchovy. …

Empirical Valuation Of Primary And Alternative Nursery Habitats For The Blue Crab Callinectes Sapidus In Chesapeake Bay, Alexander C. Hyman

Dissertations, Theses, and Masters Projects

The blue crab (Callinectes sapidus) is a commercially and ecologically importantspecies found along the Atlantic coast of North and South America. These crustaceans play a critical role in coastal ecosystems, serving as both predators and prey in the food web. The blue crab supports a major fishery in Chesapeake Bay, where the species is a cultural icon. Juvenile blue crabs, the smallest and most vulnerable size classes of individuals, are reliant upon structurally complex habitats. Population dynamics of this species are therefore influenced by spatiotemporally fluctuating environmental variables, such as habitat availability. Understanding blue crab ecology is essential for managing …

Measuring The Production Of Migratory Westslope Cutthroat Trout In Tributaries To Priest River, Idaho, Collin J. Hendricks

EWU Masters Thesis Collection

Iteroparous salmonids that exhibit a migratory life history are essential to functioning metapopulations. They are demographically important as migratory females produce more eggs than non-migratory individuals. Additionally, they provide genetic support through gene flow, resulting in more robust, genetically diverse populations. The lower Priest River flows into the Pend Oreille River in the panhandle of northern Idaho and is a system susceptible to degrading conditions due to increasing water temperature. It is also, a significant contributor of migratory Westslope Cutthroat Trout Oncorhynchus clarkii lewisi (WCT) in the Clark- Fork Pend Oreille Basin (CFPOR). The goal of our study was to …

Reflections On A Career Unplanned, Robert A. Glazer

Gulf and Caribbean Research

Sometimes life takes unexpected turns. I never planned to be a marine biologist; yet, after a long and unpredictable journey, that’s exactly where I found myself. After obtaining my B.S. in Fishery Biology from Colorado State University, I found myself meandering from job to job like a golden retriever following some vague scent. At first, I was hired by the Wyoming Game and Fish Department to work seasonally in Grand Teton National Park on the freshwater trout fisheries. Soon thereafter, I found myself cultivating oysters, clams, and other shellfish in California. The skills I developed there as an algologist led …

Estimating Relative Abundance Of Young-Of-Year American Eel, Anguilla Rostrata, In The Virginia Tributaries Of Chesapeake Bay (Spring 2022), Troy D. Tuckey, Daniel Royster, Mary C. Fabrizio

Reports

The Atlantic States Marine Fisheries Commission (ASMFC) adopted the Interstate Fishery Management Plan (FMP) for the American Eel in November 1999. The FMP calls for efforts to collect American Eel data through both fishery-dependent and fishery-independent studies in coastal states. Consequently, member jurisdictions agreed to implement an annual survey for young-of-year (YOY or glass) American Eels. The survey is intended to “…characterize trends in annual recruitment of the YOY eels over time [to produce a] qualitative appraisal of the annual recruitment of American Eel to the U.S. Atlantic Coast” (ASMFC 2000). The development of these surveys began in 2000 with …

[Draft] Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River, 2023, Troy D. Tuckey, Mary C. Fabrizio

Reports

No abstract provided.