Chemistry Commons^™

Devising A Scalable Synthesis To Probe The G-Protein Cell Receptor Signaling Pathway, Matthew Robert Medcalf

Arts & Sciences Graduate Student Theses and Dissertations

The G-protein coupled cell receptor signaling pathway is amongst the largest and most diverse class of cell-surface receptors in the body. Nearly 800 different genes encode for these cell membrane receptors which are responsible for mediating a variety of hormones, neurotransmitters, and sensory stimuli through the activation of intracellular G proteins. To date, roughly 34% of pharmaceuticals on the market target GPCR’s, but despite this fact, there are still many difficulties associated with targeting this family of receptors. The vast number of GPCR’s, disease states resulting from a dysregulation of multiple GPCR signaling pathways, and difficulties crystalizing and purifying the …

Zirconium Tetrachloride, Fundamental Chemistry And Nuclear Fuel Cycle, Rosendo Borjas Nevarez

UNLV Theses, Dissertations, Professional Papers, and Capstones

Zirconium alloys are used in the United States as cladding materials in nuclear reactors. The purification of Zr is of relevance due to the large amount of spent nuclear fuel produced every year (2,000 metric tons per year and rising), of which 25% corresponds to radioactive zirconium cladding. Through the recovery and reuse of Zr, estimated savings of $40 million per year are estimated due to the high cost of hafnium-free nuclear grade zirconium, and also due to the minimization of nuclear waste disposal requirements.

Several chemical approaches have been proposed for the recovery and purification of Zr. Historically, a …

The Retrospective Analysis Of Radionuclides In Banded Coral From The Bikini Atoll, Athena Marie Gallardo

UNLV Theses, Dissertations, Professional Papers, and Capstones

Nuclear weapons testing conducted within the Bikini Atoll in the Marshall Islands resulted in local fallout contamination, including long lived isotopes of plutonium (Pu) and uranium (U), within the surrounding environment. The Bikini lagoon provides a continuous source of Pu (239+240Pu) and U (236U) to the Pacific Basin. The rate at which these isotopes are flushed from the lagoon to the ocean is balanced by inputs from remobilization of lagoon sediments. This research will provide a basis for predicting future change in the solubility and export potential of Pu and U in lagoon sediments. This is important to better understand …

Sideromycin Pathway Elucidation: Insights Into Salmycin Biosynthesis, Transport Paradigms, And Drug Release, Gerry Sann Macaraeg Rivera

Arts & Sciences Graduate Student Theses and Dissertations

Antibiotic resistance is an increasing threat in today’s society. In order to overcome resistant bacteria, it is necessary to discover new drugs with novel mechanisms of action. This work focuses on the sideromycin pathway, encompassing the biosynthetic production, mechanism of entry and hydrolysis-mediated drug release. Sideromycins are an interesting approach to combat the rise of antibiotic resistance since they provide a different avenue that overcomes problems that arise when entering the cell. The dissertation is separated into distinct sections dealing with the various areas of interest in the sideromycin pathway, particularly for the sideromycin, salmycin, produced by Streptomyces violaceus. The …

Development And Application Of Mass Spectrometry-Based Protein Footprinting In Structural Proteomics, Ming Cheng

Arts & Sciences Graduate Student Theses and Dissertations

Integral mass spectrometry (MS) has emerged as an important tool for protein structural characterization. It readouts are a broad range of structural information, including stoichiometry, interactions, conformations and conformation change, and dynamics. Protein footprinting is a pivotal component in the intergral MS toolkit.My dissertation centers around the development and application of protein footprinting to characterize protein structure. It is divided into seven chapters.Chapter 1 serves as the introduction for integral mass spectrometry in structural proteomic.In Chapter 2, we extended the fast-photochemical oxidation of proteins (FPOP) platform by adding the trifluoromethyl radical (•CF3) as a new reagent. We discovered that •CF3 …

Influence Of Biosolids Upon The Uptake Of Mn And Cd By Radish (Raphanus Sativus L.), Oluwadamilola O. Fateru

Electronic Theses and Dissertations

The influence of biosolids upon the uptake of Mn and Cd by radish (Raphanus sativus L.) was investigated through the characterization of biosolids, sequential extraction of the biosolids, and the determination of the metal content in the root, shoot and leaves of radish (Raphanus sativus L.).The biosolid samples from Nacogdoches Wastewater Sludge (NWWS), Lufkin Wastewater Sludge (LWWS), Soil Therapy Compost (STC) had pHs between 5.33 – 6.74. The elemental compositions of the biosolid samples were determined using inductively coupled plasma optical emission spectroscopy (ICP-OES) and SEM/EDX. Major elements (K, Mg, Mn, P) needed for plant growth …

Design Of Efgr Kinase Domain Inhibitors For The Potential Treatment Of Lung And Other Cancers, Jodie Meng '20

Student Publications & Research

In 2018 alone, over 18 million cancer-related cases were diagnosed and 9.5 million cancer-related deaths occurred worldwide. As a small-molecule drug orally administered for the treatment of lung and pancreatic cancer, erlotinib (Tarceva®) inhibits the phosphorylation of the tyrosine kinase domain in the Epidermal Growth Factor Receptor (EGFR). Inhibition of EGFR reduces the bioactivity of tumor-associated endothelial cells and interferes with signal pathways involved in metastasis and development of angiogenesis. Increase in drug concentration leads to adverse effects, ranging from rash and nausea to gastrointestinal bleeding, perforation, hepatic failure, among others. Therefore, it is desirable to reduce the toxicity and …

Computer-Aided Drug Design For The Potential Treatment Against Mycobacterium Tuberculosis, Alyssa Daniels '20, Rebecca Ellington '19

Student Publications & Research

Tuberculosis (TB) is a disease that can infect any part of the body, but most often infects the lungs. About 9 million people are infected with TB each year, and left untreated, TB is deadly. However, even when treated, Mycobacterium Tuberculosis (MTB), the pathogenic bacteria responsible for TB, can become drug-resistant and patients will need a much more rigorous treatment. Isocitrate lyase (ICL) is an enzyme that allows tuberculosis (and other pathogens) to survive in the body. ICL is an enzyme in the glyoxylate cycle that catalyzes the cleavage of isocitrate to succinate and glyoxylate. MTB is facilitated by this …

C(Sp2)-C(Sp3) Cross-Coupling Of Aryl Halides And Active C(Spp3)-H Bonds Via Dual Catalysis: Organic Photocatalysis/Nickel Redox Catalysis, Nicholas Armada

Department of Chemistry: Dissertations, Theses, and Student Research

Convenient catalytic methodologies that can facilitate the formation of C-C bonds are undoubtedly of great interest in synthetic organic chemistry. Recent reports in literature have showcased hybrid catalytic methods that couple Ni-redox catalysis and photocatalysis to enable C-H activation of tetrahydrofuran (THF) and subsequent cross-coupling with aryl halides in appreciable yields and under relatively mild reaction conditions.^1-2 However, these studies used expensive, heavy metal-containing photocatalysts and both report difficulty obtaining low-specificity across their scopes of aryl-halides. The following report will shed light on a class of photo-excitable small organic molecules that – in conjunction with a catalytic Ni-redox cycle …

Influencing Factors On The Velocity And Temperature Of Propagating Fronts In Acrylate Composites, Samuel Morris Bynum

LSU Doctoral Dissertations

Thermal frontal polymerization is a type of polymerization in which a localized reaction zone propagates through an unstirred system. It is incumbent upon the production and transport of heat produced as a result of the exothermic reaction associated with free-radical polymerization. First discovered in the 1970s, frontal polymerization has been since utilized to produce a variety of different materials, utilizing a variety of different chemistries. The temperature of the propagating front and the velocity at which it propagates can be influenced via chemical or physical means. We show that through careful selection of monomers and control of the concentration of …

Building Mof Nanocomposites With Oxidized Graphitic Carbon Nitride Nanospheres: The Effect Of Framework Geometry On The Structural Heterogeneity, Dimitrios A. Giannakoudakis, Teresa J. Bandosz

Publications and Research

Composite of two MOFs, copper-based Cu-BTC (HKUST-1) and zirconium-based Zr-BDC (UiO-66), with oxidized graphitic carbon nitride nanospheres were synthesized. For comparison, pure MOFs were also obtained. The surface features were analyzed using x-ray diffraction (XRD), sorption of nitrogen, thermal analysis, and scanning electron microscopy (SEM). The incorporation of oxidized g-C3N4 to the Cu-BTC framework caused the formation of a heterogeneous material of a hierarchical pores structure, but a decreased surface area when compared to that of the parent MOF. In the case of UiO-66, functionalized nanospheres were acting as seeds around which the crystals grew. Even though the MOF phases …

Coordination Of Anions By Noncovalently Bonded Σ-Hole Ligands, Steve Scheiner, Mariusz Michalczyk, Wiktor Zierkiewicz

Chemistry and Biochemistry Faculty Publications

Research on σ-hole interactions that include halogen, chalcogen, pnicogen, and tetrel bonding has been accelerating in recent years. These cousins of the H-bond have many similar properties, including geometric preferences and energetics. Most of the work to date has focused on neutral complexes, with less known about these bonds to anions. This review summarizes the current state of knowledge about the complexes of anions with ligands that engage in these sorts of noncovalent bonds. Of particular interest are comparisons with H-bonds, and how the geometry of the fully coordinated complex varies as the number of surrounding ligands increases. A specific …

Oh Chemistry Of Non-Methane Organic Gases (Nmogs) Emitted From Laboratory And Ambient Biomass Burning Smoke: Evaluating The Influence Of Furans And Oxygenated Aromatics On Ozone And Secondary Nmog Formation, Matthew M. Coggon, Christopher Y. Lim, Abigail R. Koss, Kanako Sekimoto, Bin Yuan, Jessica B. Gilman, David H. Hagan, Vanessa Selimovic, Kyle J. Zarzana, Steven S. Brown, James M Roberts, Markus Müller, Robert Yokelson, Armin Wisthaler, Jordan E. Krechmer, Jose L. Jimenez, Christopher Cappa, Jesse H. Kroll, Joost De Gouw, Carsten Warneke

Chemistry and Biochemistry Faculty Publications

Chamber oxidation experiments conducted at the Fire Sciences Laboratory in 2016 are evaluated to identify important chemical processes contributing to the hydroxy radical (OH) chemistry of biomass burning non-methane organic gases (NMOGs). Based on the decay of primary carbon measured by proton transfer reaction time-of-flight mass spectrometry (PTR-ToF-MS), it is confirmed that furans and oxygenated aromatics are among the NMOGs emitted from western United States fuel types with the highest reactivities towards OH. The oxidation processes and formation of secondary NMOG masses measured by PTR-ToF-MS and iodide-clustering time-of-flight chemical ionization mass spectrometry (I-CIMS) is interpreted using a box model employing …

Zirconia-Based Compositions For Use In Passive NoX Adsorber Devices, Deborah Jayne Harris, David Alastair Scapens, John G. Darab, Mark Crocker, Yaying Ji

Chemistry Faculty Patents

A passive NO_x adsorbent includes: palladium, platinum or a mixture thereof and a mixed or composite oxide including the following elements in percentage by weight, expressed in terms of oxide: 10-90% by weight zirconium and 0.1-50% by weight of least one of the following: a transition metal or a lanthanide series element other than Ce.

Although the passive NO_x adsorbent can include Ce in an amount ranging from 0.1 to 20% by weight expressed in terms of oxide, advantages are obtained particularly in the case of low-Ce or a substantially Ce-free passive NO_x adsorbent.

Nanopatterned Silk Fibroin Films With High Transparency And High Haze For Optical Applications, Corey Malinowski, Fengjie He, Yihong Zhao, Ivan Chang, David W. Hatchett, Shengjie Zhai, Hui Zhao

Chemistry and Biochemistry Faculty Research

Simultaneous high transparency and high haze are necessary for high-efficiency optical, photonic, and optoelectronic applications. However, a typical highly transparent film lacks high optical haze or vice versa. Here, we report a silk fibroin-based optical film that exhibits both ultrahigh optical transparency... (See article for full abstract).

Total Phenolic And Flavonoid Contents Of Anacyclus Pyrethrum Link Plant Extracts And Their Antioxidant Activity, Hanane Elazzouzi, Nadia Zekri, Touriya Zair, Mohamed Alaoui El Belghiti

Karbala International Journal of Modern Science

In this study, Anacyclus pyrethrm Link (roots) is a medicinal plant from the Asteraceae family, endemic to Morocco and is widely used in traditional medicine; was investigated for their total phenolics, flavonoids contents and antioxidant activities. The quantitative estimation of total flavonoids and phenols by the colorimetric method showed that the extracts were prepared by fractionation of the crude hydromethanolic extract (ethyl acetate and n-butanol). The phenol content of various extracts, estimated by the Folin-Ciocalteu method, was between 1,44 and 12,82 mg EAG / g extract of A. pyrethrum. Moreover, it is clear that ethyl acetate was the …

Design Of Reinforced Concrete Deep Beams Using Particle Swarm Optimization Technique, Qais F. Hasan, Dler A. Al-Mamany, Omer K. Fayadh

Karbala International Journal of Modern Science

Researches available in literature interrelating neural networks to civil engineering design problems, especially for beep beams, are very rare. Therefore, an optimization algorithm is developed and verified in this study and coded using MATLAB functions to determine the optimum cost design of reinforced concrete deep beams. ACI 318-14 code method is used benefiting from iterative particle swarm optimization technique due to its efficiency and reliability. Minimizing total cost is used as the objective function in terms of four decision variables. Self-adaptive penalty function technique is used to handle constraints for each of the 300 randomly selected particles, and in each …

Artificial Bee Colony Algorithm For Solving Fuzzy Multi-Objective Bed Allocation Model, Abdulhakeem Luqman Hasan

Karbala International Journal of Modern Science

With the improvement of the medical services frameworks rivalry, hospitals face more and more challenges. In the interim, allotment of resource has a crucial influence on performing competitive benefits in a hospitals. To choose the suitable beds number is one of the most essential tasks in hospital administration. Anyway, in true condition, bed allotment choice is a multiple-side problem with weakness and haphazardness of the information available. It is so sophisticated. Therefore, the research about bed allotment difficulty is comparatively rare under considering multiple departments, nursing hours, and stochastic information about arrival and service of patients. In this paper, we …

Performance Study Of The Membrane Based Layered Double Hydroxides ‘Znal-Gh’ In The Purification Of Groundwater, Jaouad Zerhouni, Omar Qabaqous, Fouzia Rhazi Filali, Mohammed Naciri Bennani, Najib Tijani

Karbala International Journal of Modern Science

The objective of this work is focused on the preparation and characterization of plan microfiltration membrane Zn₃Al-Gh and the study of their efficiency in the treatment of ground water. This membrane was carried by using the support of the clay such as Ghassoul ‘Gh’ prepared by using dry uniaxial compaction method. The layered double hydroxides (LDH) based on Zn₃Al-CO₃with molar ratio (Zn²⁺/Al³⁺=3) was deposited on support by direct co-precipitation method.

The characterizations of the membrane LDH-Gh ‘Zn₃Al-Gh’ and deposited layer Zn₃Al-CO_3, was done by scanning …

Evaluation Of Atmospherically Gases Using Models Flaash And Quac To Hyper-Spectral Imagery, Asmaa Maher

Karbala International Journal of Modern Science

The important step is correction of the effect of atmospheric on hyper-spectral imagery of the VIS “visible”, short wave & NIR “near-infrared” spectral range. In general, the cause for limiting the use of hyperspectral images is the atmospheric effects, so, atmospheric correction is necessary for any accurate processing. In this work, two atmospheric correction techniques have been applied on Hyper-spectral image. From the raw original image and also from the FLAASH and QUAC atmospheric corrected images the spectra of vegetation, water and soil were extracted. The acquisition data for study contained Hyperion bands for year “2015” images over each of …

Editorial Board

Karbala International Journal of Modern Science

No abstract provided.

Semitransparent Sb2s3 Thin Film Solar Cells By Ultrasonic Spray Pyrolysis For Use In Solar Windows, Jako S. Eensalu, Atanas Katerski, Erki Kärber, Lothar Weinhardt, Monika Blum, Clemens Heske, Wanli Yang, Ilona Oja Acik, Malle Krunks

Chemistry and Biochemistry Faculty Research

The integration of photovoltaic (PV) solar energy in zero-energy buildings requires durable and efficient solar windows composed of lightweight and semitransparent thin film solar cells. Inorganic materials with a high optical absorption coefficient, such as Sb2S3 (>105 cm−1 at 450 nm), offer semitransparency, appreciable efficiency, and long-term durability at low cost. Oxide-free throughout the Sb2S3 layer thickness, as confirmed by combined studies of energy dispersive X-ray spectroscopy and synchrotron soft X-ray emission spectroscopy, semitransparent Sb2S3 thin films can be rapidly grown in air by the area-scalable ultrasonic spray pyrolysis method. Integrated into a ITO/TiO2/Sb2S3/P3HT/Au solar cell, a power conversion …

Semitransparent Sb2s3 Thin Film Solar Cells By Ultrasonic Spray Pyrolysis For Use In Solar Windows, Jako S. Eensalu, Atanas Katerski, Erki Kärber, Lothar Weinhardt, Monika Blum, Clemens Heske, Wanli Yang, Ilona Oja Acik, Malle Krunks

Chemistry and Biochemistry Faculty Research

The integration of photovoltaic (PV) solar energy in zero-energy buildings requires durable and efficient solar windows composed of lightweight and semitransparent thin film solar cells. Inorganic materials with a high optical absorption coefficient, such as Sb2S3 (>105 cm−1 at 450 nm), offer semitransparency, appreciable efficiency, and long-term durability at low cost. Oxide-free throughout the Sb2S3 layer thickness, as confirmed by combined studies of energy dispersive X-ray spectroscopy and synchrotron soft X-ray emission spectroscopy, semitransparent Sb2S3 thin films can be rapidly grown in air by the area-scalable ultrasonic spray pyrolysis method. Integrated into a ITO/TiO2/Sb2S3/P3HT/Au solar cell, a power conversion …

Novel Ethylene-Bridged Hexadentate Bis(Amidines), Bis(Amidinates), And Multinuclear Coinage Metal Bis(Amidine) Complexes, Omar Ugarte Trejo

Master of Science in Chemical Sciences Theses

A new series of hexadentate flexible bis(amidine) ligands (L^1–6H₂) and the multinuclear coinage metal complexes 1–5 of L⁴H₂ were synthesized and characterized. The synthesis of L^1–6H₂ followed a 3-step protocol: first, the bis(amide) precursor is formed by reacting ethylene diamine with pivaloyl chloride; second, the bis(amide) is chlorinated with PCl₅ to produce the corresponding bis(imidoyl chloride); finally, the bis(imidoyl chloride) is reacted with the primary arylamine (L^1–6H₂ yields: 62, 54, 56, 61, 63, and 58%). L^2–6H₂ were found to …

Composition Effect On The Carrier Dynamics And Catalytic Performance Of Cuins2/Zns Quantum Dots For Light Driven Hydrogen Generation, Wenhui Hu, Sizhuo Yang, Jier Huang

Chemistry Faculty Research and Publications

Water soluble CuInS₂/ZnS quantum dots (QDs) represent one of the most promising single component photocatalysts for the hydrogen evolution reaction (HER). In this work, we report the effect of cation composition in CuInS₂/ZnS QDs on the carrier relaxation and charge separation dynamics as well as their photocatalytic performance for the HER. With decreasing Cu to In ratio (increasing Cu deficiency), we observed slightly faster electron trapping and carrier recombination but significantly improved photocatalytic activity for the HER. This can be attributed to the enhanced electron transfer (ET) from the sacrificial donor to CuInS₂/ZnS QDs …

Analysis Of E-Cigarette Liquids And Aerosols By Nmr Spectroscopy: Compositions, Boiling Points, And Degradation Profiles, Anna Katherine Duell

Dissertations and Theses

Electronic cigarettes (e-cigarettes) are an increasingly popular tobacco product used by ~3% of adults and 21% of 12th grade students (as reported for the prior 30-days in surveys) in the United States in 2018. As of 2019, this number went up to ~25% for 12th grade students. Due to how quickly e-cigarettes gained popularity and the rapid design changes that have ensued, there has not been enough time to accurately assess the effects of e-cigarettes, particularly for long-term use. The liquids used in e-cigarettes (e-liquids) can degrade when vaped in an e-cigarette, so understanding the variables that can modulate degradation …

Evaluation Of Tumor Necrosis Factor Alpha In Sleep-Deprived Menopausal- Induced Rats And The Impact On Bone Health, Nicole Ellsworth, Dwight Curry Iii, Cj Deleon, Frank Frisch

Student Scholar Symposium Abstracts and Posters

Post-menopausal osteoporosis as a consequence of estrogen depletion is a growing concern for women in the United States. As more women take on executive positions and experience sleep deprivation, there is the potential for up regulation of pro-inflammatory cytokines, such as tumor necrosis factor alpha. It follows that the homeostatic imbalance of osteoclastic and osteoblastic activity leads to a greater risk of disease. Bisphosphonates generally, and Zolendronate specifically works by decreasing the number of osteoclasts. This current study investigated the impact of Zolendronate on the concentrations of tumor necrosis factor alpha-type (TNFɑ) in 32 ovariectomized Wistar rats. Throughout a five …

The Process Of Establishing Theoretically Grounded Measures Of Science And Chemistry Identity For Use In Undergraduate Chemistry Courses, Kathryn Nicole Hosbein

Dissertations and Theses

Identity has been theorized to aid in student persistence toward science, engineering, technology, and math (STEM) degrees. However, before we can explore the impacts of learning environments on identity, and subsequently persistence, robust measures that can aid in understanding how identity is fostered need to be available. This research study aims to create measures of identity by expanding an existing physics identity framework and contextualizing it to science and chemistry identities. Development of the measures was carried out through two distinct phases that provided evidence for reliability and multiple aspects of validity.

The first phase of the study used qualitative …

Spectroscopic And Computational Comparisons Of Thiolate-Ligated Ferric Nonheme Complexes To Cysteine Dioxygenase: Second-Sphere Effects On Substrate (Analogue) Positioning, Anne A. Fischer, Joshua R. Miller, Richard J. Jodts, Danushka M. Ekanayake, Sergey V. Lindeman, Thomas C. Brunold, Adam T. Fiedler

Chemistry Faculty Research and Publications

Parallel spectroscopic and computational studies of iron(III) cysteine dioxygenase (CDO) and synthetic models are presented. The synthetic complexes utilize the ligand tris(4,5-diphenyl-1-methylimidazol-2-yl)phosphine (^Ph2TIP), which mimics the facial three-histidine triad of CDO and other thiol dioxygenases. In addition to the previously reported [Fe^II(CysOEt)(^Ph2TIP)]BPh₄ (1; CysOEt is the ethyl ester of anionic l-cysteine), the formation and crystallographic characterization of [Fe^II(2-MTS)(^Ph2TIP)]BPh₄ (2) is reported, where the methyl 2-thiosalicylate anion (2-MTS) resembles the substrate of 3-mercaptopropionate dioxygenase (MDO). One-electron chemical oxidation of 1 and 2 yields ferric species …

Barth Syndrome: Exploring Cardiac Metabolism With Induced Pluripotent Stem Cell-Derived Cardiomyocytes, Erica M. Fatica, Gina A. Deleonibus, Alisha House, Jillian V. Kodger, Ryan W. Pearce, Rohan R. Shah, Liraz Levi, Yana Sandlers

Chemistry Faculty Publications

© 2019 by the authors. Licensee MDPI, Basel, Switzerland. Barth syndrome (BTHS) is an X-linked recessive multisystem disorder caused by mutations in the TAZ gene (TAZ, G 4.5, OMIM 300394) that encodes for the acyltransferase tafazzin. This protein is highly expressed in the heart and plays a significant role in cardiolipin biosynthesis. Heart disease is the major clinical manifestation of BTHS with a high incidence in early life. Although the genetic basis of BTHS and tetralinoleoyl cardiolipin deficiency in BTHS-affected individuals are well-established, downstream metabolic changes in cardiac metabolism are still uncovered. Our study aimed to characterize TAZ-induced metabolic perturbations …