Chemistry Commons^™

Methyl Ketones From Carboxylic Acids As Valuable Target Molecules In The Biorefinery, Olivier Marie, Alexey Ignatchenko, Michael Renz

Chemistry Faculty/Staff Publications

For the preparation of methyl ketones, cross Ketonic Decarboxylation, i.e., the formation of a ketone from two different carboxylic acids, and the reketonization, i.e., the transformation of a carboxylic acid into a ketone employing a ketone as alkyl transfer agent, may be interesting alternatives to classical pathways involving metal-organic reagents.

The fine chemical 2-undecanone was chosen as model compound and ketonic decarboxylation and reketonization evaluated by Green Chemistry matrices, namely the carbon atom efficiency and the e-factor. The e-factor of the reaction of decanoic acid with acetic acid was less than five and, therewith, in the acceptable range for bulk …

Correlating The Physicochemical Properties Of Magnesium Stearate With Tablet Dissolution And Lubrication, Julie L. Calahan

Theses and Dissertations--Pharmacy

Magnesium stearate (MgSt) is the most commonly used pharmaceutical excipient and is present in over half the tablet formulations on the market. In spite of its popularity as an effective lubricant, it has been repeatedly recognized that there is significant variability between MgSt samples, which can cause inconsistent lubrication between batches of MgSt. The hypothesis of this research is that the batch-to-batch variability in tablet lubrication and dissolution observed in tablet formulations containing different MgSt samples can be correlated with differences in MgSt physicochemical properties (fatty acid salt composition, crystal hydrate form, particle size and surface area). Developing correlations between …

Carbon Oxidation At The Atomic Level: A Computational Study On Oxidative Graphene Etching And Pitting Of Graphitic Carbon Surfaces, Simon Schmitt

Theses and Dissertations--Mechanical and Aerospace Engineering

In order to understand the oxidation of solid carbon materials by oxygen-containing gases, carbon oxidation has to be studied on the atomic level where the surface reactions occur. Graphene and graphite are etched by oxygen to form characteristic pits that are scattered across the material surface, and pitting in turn leads to microstructural changes that determine the macroscopic oxidation behavior. While this is a well-documented phenomenon, it is heretofore poorly understood due to the notorious difficulty of experiments and a lack of comprehensive computational studies. The main objective of the present work is the development of a computational framework from …

Tuning The Activity And Stability Of Platinum Nanoparticles Toward The Catalysis Of The Formic Acid Electrooxidation, Islam M. Al-Akraa, Bilquis A. Al-Qodami, Santosh Sridhar Mysore Dr, R. Viswanatha Dr, Abdul Kareem Thottoli, Ahmad M. Mohammad

Chemical Engineering

No abstract provided.

Enhanced Glucose Electrooxidation At Ni-Cu Binary Oxide Nanocatalyst, Islam M. Al-Akraa, Mahmoud M. Abouzaid Eng, Yaser M. Asal Mr, Ahmad M. Mohammad Prof

Chemical Engineering

The aim of this study is to fabricate a nickel (NiOx) and copper (CuOx) oxide nanocatalyst on a glassy carbon (GC) electrode (will be abbreviated as Ni-Cu/GC) for glucose oxidation (GO). A sequential electrodepositon mode was applied to assemble NiOx and CuOx in the fabrication scheme. The optimization of Ni loading on the GC surface (will be abbreviated as Ni/GC electrode) was achieved first to attain the maximum catalytic efficiency in terms of the specific current toward GO. This (409 Ag1)was obtained by applying 15 mC/cm2 in the deposition of Ni. However, unfortunately the NiOx/GC could not support a long-term …

Effect Of The Electrodeposition Potential Of Platinum On The Catalytic Activity Of A Pt/Gc Catalyst Toward Formic Acid Electro−Oxidation, Islam M. Al-Akraa, Bilquis A. Al-Qodami Ms., Ahmad M. Mohammad Prof

Chemical Engineering

The electrocatalytic activity of platinum (Pt)–modified glassy carbon (GC) (referred as Pt/GC) electrodes toward the formic acid electro−oxidation (FAO) was investigated. The Pt deposition on the GC substrate was carried out by a potentiostatic technique at different potentials (from 0.2 V to −0.2 V vs. Hg/Hg2Cl2/KCl (sat.) reference electrode) and the corresponding influence on the catalytic activity toward FAO was monitored. The electrocatalytic inspection revealed a potential role for the Pt deposition potential in boosting the catalytic efficiency of the catalyst toward FAO and further in mitigating the CO poisoning that eventually deactivate the catalyst. Interestingly, the highest activity toward …

Development Of Novel Adsorbent For Industrial Waste Water Treatment, Islam M. Al-Akraa, Hassan M. Shehata Eng, Dalia A. Ali Eng., Hoda A. Elsawy Dr

Chemical Engineering

The main objective of this research project is to perform some experimental procedures to inform the ability of the novel adsorbent used in this project. The chemical modification of the adsorbent is the chemical oxidation of pure powder chitosan using some specific redox pairs which are potassium dichromate and sodium bisulphite. After preparing the modified chitosan, there are some parameters that must be discussed during the adsorption process. The first parameter is the time parameter, showing experimentally the optimum time for adsorption under certain conditions by collecting values of absorbance and concentration of thymol blue adsorbed after the process from …

Ni-Au Anodic Nano-Electrocatalyst For Direct Glucose Fuel Cells, Islam M. Al-Akraa, Aya S. Abdulhalim Eng, Yassr M. Asal Mr, Ahmad M. Mohammad Prof

Chemical Engineering

This study aims at the sequential assembling of a nickel oxide (NiOx: cauliflower-like nanostructure, 90 nm) and gold (Au; spherical, 95 nm in an average particle size) onto the GC surface nanocatalyst on a glassy carbon (GC) electrode (will be abbreviated as Ni-Au/GC) for the glucose electro−oxidation (GO); the principal anodic reaction in the direct glucose fuel cells (DGFCs). The charge of the Ni deposition on the GC surface (will be abbreviated as Ni/GC electrode) was initially optimized to obtain the highest catalytic activity toward GO which attained at (339.8 Ag−1) by applying 15 mC in the Ni deposition. Yet, …

Reconstructing Hydrologic Conditions And Metals Supplied By The Peace River To The Peace-Athabasca Delta, Jelle André Faber

Theses and Dissertations (Comprehensive)

The Peace-Athabasca Delta (PAD) in northern Alberta, Canada, is recognized internationally for its ecological, historical, and cultural significance. The delta is mostly within Wood Buffalo National Park, a UNESCO World Heritage Site, and is a Ramsar Wetland of International Importance. The construction of the WAC Bennett Dam (1967) and the Site C Dam (ongoing, 2024) on the Peace River, and expansion of the Alberta Oil Sands industry along the Athabasca River have raised concerns over water quantity and quality in the delta. When industry operations began, effective monitoring had not been implemented. Consequently, pre-industrial reference conditions are unknown and can …

Quantum Biology? From Dna Point Mutations To Fibril Formation In Alzheimer Disease, Eduardo Romero Camacho

Electronic Theses and Dissertations, 2020-2023

In the '60s, Löwdin explored the realm of Quantum Biology. Löwdin defined Quantum Biology as the use of quantum mechanics to study the activity and molecular properties of biologically active molecules such as DNA, RNA, and proteins. This dissertation aims to describe molecules of biological interest such as DNA base pairs and amyloid-beta peptides and treat them using a quantum mechanical approach. We used electronic structure methods to achieve the quantum biological nature of these molecules under our computational power, tools, and techniques. In chapter 2, we present the quantum mechanical description of the spontaneous mutations in DNA base pairs …

A Nested Pcr Strategy For Recovering Highly Discriminatory Y-Str Dna Profiles From Trace Male Dna Samples, Anna Kimball

Electronic Theses and Dissertations, 2020-2023

DNA profiling is an effective method of identifying individuals in forensic casework. In sexual assault cases in particular, male donor DNA can be genotyped using Y chromosome short tandem repeat (Y-STR) analysis even in the presence of significant levels of female DNA. The recently released recommended national standard for sexual assault evidence collection from the victim is within 5 days after the sexual assault, with the probability of obtaining a male DNA profile diminishing significantly thereafter due to degradation and/or loss of sperm. The present study was designed to develop a method of obtaining a highly probative DNA profile with …

Total Synthesis Of Natural Products From Oxidative Dearomatization, Nameer Ezzat

Electronic Theses and Dissertations, 2020-2023

The goal of our research is to prepare natural products and related core structures through oxidative dearomatization. The development of a stereoselective iron (III)-mediated intramolecular cascade dearomatization of phenol allowed access to various spirocyclohexadienones and tropons in one step using potassium ferricyanide via single electron transfer (SET). Using this oxidative dearomatization reaction, the thesis focuses on three main parts. The first part is the synthetic efforts toward total synthesis of Harringtonolide. The second part focused on the synthesis of spiro[4.5]decane, a core structure in multiple natural products. The spiro compounds were prepared from ortho hydroxyphenyl nitroalkanes using SET reaction with …

Studies On The Synthesis Of Unusual Amino Acids And Their Incorporation Into New Peptide Antibiotics, Agnieszka Wadolowska

Doctoral

As microorganisms continue to develop resistance and survive against many different forms of antimicrobial solutions, such as antibiotics, there is urgent need for new classes of antimicrobial peptides to mitigate the threat. Bacteria are a rich source of ribosomally-synthesized antimicrobial peptides known as bacteriocins, which are produced by one bacterial species to kill other bacterial strains. Lanthionine-containing lantibiotics and sactibiotics are post-translationally modified bacteriocins which display extremely potent antibacterial activity.

Thuricin CD, a two-peptide system belonging to the sactibiotic family, shows high activity, but most importantly excellent selectivity, against C. difficile infection. The Thuricin CD peptides contain a number of …

Ratiometric Near-Infrared Fluorescent Probes For The Sensitive Detection Of Intracellular Ph And Bio-Thiols In Live Cells, Shuai Xia

Dissertations, Master's Theses and Master's Reports

In the past twenty years, fluorescence sensing and imaging based on fluorescent probes has been developed as an imperative technique due to the merits including excellent sensitivity, operational simplicity, instant time effectiveness and outstanding selectivity in the research areas such as mineralogy, gemology, biological medicine, materials and environmental engineering. Protons act as a significant role in a variety of pathological and physiological processes, and there are obvious differences in the pH among organelles: the pH in lysosomes is acid within the range of 4.5–5.5, whereas mitochondrial pH is basic that can be as high as 8.0. Abnormal intracellular pH is …

Gravity-Drawing Flexible Silicone Filaments As Fiber Optics And Model Foldamers, Katherine Snell

CMC Senior Theses

Here, we present a method of gravity-drawing polydimethylsiloxane (PDMS) silicone fibers with application as fiber optics and as model foldamers. Beginning as a viscous liquid, PDMS is cured using heat until its measured viscosity reaches 4000 mPa•s. The semi-cured elastomer is then extruded through a tube furnace to produce thin (diameters on the order of hundred micrometers) filaments with scalable lengths. PDMS is biocompatible, gas-permeable, flexible, and hydrophobic. Additionally, the PDMS surface hydrophobicity can be modified via UV exposure, O2 plasma, and corona discharge. We demonstrate the patternibility (i.e patterns of hydrophobicity) of PDMS fibers, adding complexity to potential foldamer …

Formation Of P-N Junctions In Nanoparticle Cerium Oxide Electrolytic Cells Displaying Memristive Switching Behaviour, Rafaela Cristina De Carvalho, Tony Betts, John Cassidy

Articles

A macro-scale metal–semiconductor–metal device comprising CeO₂ nanoparticles cast from a suspension of cerium dioxide formed by a novel synthetic method was fabricated. Thin CeO₂ films of 40 nm thickness placed between panels of aluminium and/or copper displayed memristive-like resistive switching behaviour upon the application of potential sweeps ranging between −0.6 V and 0.6 V. A mechanism is proposed based on the notion that an electrolytic cell operates under such conditions with the initial formation of p and n-type regions within the central semiconductive thin film. Evidence is presented for the existence of numerous point defects in these nanosized …

An Ammonia Sensor Using An Unadorned Bromocresol Layer, John Cassidy, Caoimhe Ní Néill, Merve Akdağ, Tony Betts

Articles

Bromocresol Purple,(BCP) cast onto an acetate sheet, was used to sense ammonia. This simple layer responded reversibly to a low concentration ( 15 ppm) of ammonia in the presence of water vapour. The BCP solution was spincoated on an acetate sheet from a solution in dichloromethane. This layer was exposed to nitrogen and NH3/H2O vapour in quick succession. The colour change occurred from yellow to purple rapidly in the solid state. The λmax for the neutral ( acid) form of the BCP was found to be 435 nm and the λmax for the dianion ( base form) of the BCP …

Determination Of Integrity, Stability And Density Of The Dna Layers Immobilised At Glassy Carbon And Gold Electrodes Using Ferrocyanide, John Colleran, Anna Banasiak

Articles

The technique chosen to immobilise DNA onto electrodes can determine the density and stability of the resultant immobilised layer. DNA‐modified electrodes were prepared using four common DNA immobilisation methods and characterised using ferrocyanide. The negatively charged DNA strands should repel ferrocyanide anions. The DNA layers created using adsorption at glassy carbon electrodes were unstable, while those created through chemisorption of thiol‐modified DNA onto gold electrodes were repeatable and stable, and returned, on average, 94 % repulsion of the probe. The presented results show how the immobilisation protocol, and DNA type, affects the stability, repeatability, and integrity of resultant DNA layers.

Gc-Ms Analysis Of Synthesized Biodiesel, Courtney R. Whetstine

Forensic Science Master's Projects

Biodiesel is an alternative energy resource that can replenish depleting natural petroleum storage. Synthesis of biodiesel is cost-efficient as it can be chemically converted from renewable wastes, such as vegetable oil or animal fat. These fuels are also biodegradable and the exhaust emissions from biodiesel are non-toxic and environmentally-friendly. Biodiesel is a stable fuel that performs reliably in all diesel engines. Biodiesel is also easy to synthesize, safe to handle, and works with diesel fuel storage and pumping systems. The United States has an abundance of vegetable oils that have not been widely used to our advantage. Additionally, fast-food restaurants …

First-Semester Organic Chemistry During Covid-19: Prioritizing Group Work, Flexibility, And Student Engagement, Leslie A. Nickerson, Kevin M. Shea

Chemistry: Faculty Publications

Our first-semester organic chemistry class focused on structured group work to enable active learning in class. When Smith College switched to online learning after spring break, the class was adapted to fit into an online learning model while retaining active learning. Using feedback from students, we implemented two tracks, one focused on independent work and one focused on group work. Using Zoom’s breakout rooms, we were able to simulate the full class and small group experiences of our in-person class with the help of student learning assistants to facilitate group learning. Slack was introduced for class questions and communications. Student …

Improving The Value Of The Coconut With Biotechnology, Fabian M. Dayrit, Quang Nguyen

Chemistry Faculty Publications

The fruit of the coconut tree is perhaps the most useful plant resource in the tropics. All parts of the coconut fruit have traditional uses that have been developed commercially in recent times (Foale 2003, Dayrit and Dayrit 2013). Due to its widespread household use, trade and industry statistics on coconut products reflect only part of the actual importance of the coconut. Today, coconut-based products have gone beyond the tropics and are consumed in many temperate countries and global regions such as Australia, China, Europe, North America, and the Middle East (Costello 2018). Coconut milk is the basic ingredient of …

Feasibility Of Cyclodextrin-Potassium Ion Assemblies Synthesis And Its Application In Loading Bio-Active Molecules, Yomkippur Perez, Gilbert U. Yu

Chemistry Faculty Publications

In the study, colorless cubic crystals of “green” cyclodextrin (CD)-based assemblies were synthesized and their potential to load bio-active molecules such as drugs and, separately, enzymes were investigated. Busulfan (Bu), an anti-cancer drug widely used to treat chronic myelogenous leukemia (CML), was used as a test drug while trypsin and lipase were used as model enzymes. These porous CD-K+ ion assemblies were prepared by dissolving alkali metal salts and γ-CD in water followed by vapor diffusion in varying solvents for several days. Crystals were activated via dichloromethane dispersion and in vacuo drying. Slow vapor diffusion with ethanol was found to …

Fabrication Of A 3d Printed Porous Junction For Ag|Agcl|Gel-Kcl Reference Electrode, Sarah May Sibug-Torres, Lance P. Go, Erwin Enriquez

Chemistry Faculty Publications

Fused filament fabrication (FFF) is a 3D printing method that is attracting increased interest in the development of miniaturized electrochemical sensor systems due to its versatility, low cost, reproducibility, and capability for rapid prototyping. A key component of miniaturized electrochemical systems is the reference electrode (RE). However, reports of the fabrication of a true 3D-printed RE that exhibits stability to variations in the sample matrix remain limited. In this work, we report the development and characterization of a 3D-printed Ag|AgCl|gel-KCl reference electrode (3D-RE). The RE was constructed using a Ag|AgCl wire and agar-KCl layer housed in a watertight 3D-printed acrylonitrile …

Biodegradability Of Single And Mixed Surfactant Formulations, Jarrent R. Tayag, Ronaldo M. Fabicon

Chemistry Faculty Publications

Even though detergent surfactants are mandated to be biodegradable, the environmental fate of these surfactants when mixed together in bodies of water is still not established. The study aimed to determine the biodegradability of NaLAS/CTAB surfactant combinations by measuring the amount of evolved CO2 which was measured using the OECD 301b procedure. The 90/10 and 10/90 NaLAS/CTAB systems showed a decline in biodegradation behaviors which were recorded as 55.88% and 40.12% biodegradation, respectively, after a 28-day monitoring period. Conductivity results revealed changes in the availability of ions in the system. An inflection point was observed at a CTAB concentration of …

Observation Of Reduced Thermal Conductivity In A Metal-Organic Framework Due To The Presence Of Adsorbates, Hasan Babaei, Mallory E. Decoster, Minyoung Jeong, Zeinab M. Hassan, Timur Islamoglu, Helmut Baumgart, Alan J.H. Mcgaughey, Engelbert Redel, Omar K. Farha, Patrick E. Hopkins, Jonathan A. Malen, Christopher E. Wilmer

Electrical & Computer Engineering Faculty Publications

Whether the presence of adsorbates increases or decreases thermal conductivity in metal-organic frameworks (MOFs) has been an open question. Here we report observations of thermal transport in the metal-organic framework HKUST-1 in the presence of various liquid adsorbates: water, methanol, and ethanol. Experimental thermoreflectance measurements were performed on single crystals and thin films, and theoretical predictions were made using molecular dynamics simulations. We find that the thermal conductivity of HKUST-1 decreases by 40 – 80% depending on the adsorbate, a result that cannot be explained by effective medium approximations. Our findings demonstrate that adsorbates introduce additional phonon scattering in HKUST-1, …

Polyacrylamide In Glycerol Solutions From An Atomistic Perspective Of The Energetics, Structure, And Dynamics, Scott D. Hopkins, Gideon K. Gogovi, Eric Weisel, Robert A. Handler, Estela Blaisten-Barojas

VMASC Publications

All-atom molecular dynamics is used to investigate the structural, energetic, and dynamical properties of polyacrylamide (PAM) oligomers of different lengths solvated in pure glycerol, a 90:10 glycerol–water mixture, and pure water. We predict that the oligomers’ globular structure is obtained only when the modeling strategy considers the solvent as a continuous background. Meanwhile, for all-atom modeled solvents, the glycerol solutions display a strong tendency of trapping the oligomers in instantaneous elongated random coiled structures that remain locked-in over tens of nanoseconds. In pure water, the oligomers acquire considerably shorter random coiled structures of increased flexibility. The all-atom force field, generalized …

Determination Of Samarium And Dysprosium Solubility, Seana Brennan

Theses and Dissertations (Comprehensive)

In recent years, the use of Rare Earth Elements (REE) has rapidly increased, resulting in numerous potential anthropogenic inputs to the environment. As a result, these metals are emerging as microcontaminants and pose a potential threat to aquatic life. However, the toxicity of REE are largely unknown due, in part, to the limited information on their chemical speciation. The purpose of this project was to gain an understanding of REE precipitate formation and solubility as the foundation for the development of the chemical equilibrium component of toxicity prediction models. Solubility experiments were conducted with Samarium, (Sm), a light REE, and …

Nanoparticles As Alternative Ceramic Glaze Colorants, Nathan Dinh

Honors Theses

Metallic nanoparticles, including gold and silver, have been used in wide-ranging applications due to their versatile characteristics. These include catalysis, biosensing, imaging, cancer treatments, and art. Due to the phenomenon called surface plasmon resonance, metallic particles change optical properties when sized in the nanoscale based on their composition, shape, diameters, or aspect ratios. In study, these robust nanoparticle systems are applied as an alternative to traditional bulk metal colorants in ceramic glazes.

In this study, the research goals are two-fold: to understand firing mechanism on the gold nanoparticle size and to develop these processes for wider use by regular artisans. …

One-Pot Silyl Ketene Imine Formation-Nucleophilic Addition Reactions Of Acetonitrile With Acetals And Nitrones, C. Wade Downey, Grace Ann L. Robertson, Jhonmattew Santa, Kari R. Flicker, William M. Stith

Chemistry Faculty Publications

Trimethylsilyl trifluoromethanesulfonate (TMSOTf) and a trialkylamine base promote the conversion of acetonitrile to its silyl ketene imine in situ when acetonitrile is employed as solvent. Residual TMSOTf acts as a Lewis acid catalyst to activate acetals and nitrones in the reaction mixture, yielding β-methoxynitriles and β-(silyloxy)aminonitriles, respectively. Some reaction products undergo elimination under the reaction conditions to provide the α,β-unsaturated nitrile directly.

Open Ensemble Modeling Of Confined Electrolytes, Serban Zamfir

Theses and Dissertations

The main purpose of my study was to work towards better understanding the behavior of salt solutions in nanoconfinements and its causes. To this end I have developed an in-house C++ code that can perform notoriously challenging open ensemble Monte Carlo molecular simulations, calculate relevant thermodynamic and extract structural information about each system. I use this code in my first project which deals with the intrusion/extrusion of aqueous NaCl into a nanopore open to a pressurized bulk environment. For my second project, I study the effect of explicitly accounting for intramolecular polarization and accompanying multi-body interactions on the uptake, structure, …