Chemistry Commons^™

On The Roles Of Wheat Endosperm Adp-Glucose Pyrophosphorylase Subunits, Danisa M. L. Ferrero, Matias D. Asencion Diez, Misty L. Kuhn, Christine A. Falaschetti, Claudia V. Piattoni, Alberto A. Iglesias, Miguel A. Ballicora

Chemistry: Faculty Publications and Other Works

The ADP-glucose pyrophosphorylase from wheat endosperm controls starch synthesis in seeds and has unique regulatory properties compared to others from this family. It comprises two types of subunits, but despite its importance little is known about their roles. Here, we synthesized de novo the wheat endosperm ADP-glucose pyrophosphorylase small (S) and large (L) subunit genes, heterologously expressed them in Escherichia coli, and kinetically characterized the recombinant proteins. To understand their distinct roles, we co-expressed them with well characterized subunits from the potato tuber enzyme to obtain hybrids with one S subunit from one source and an L subunit from …

Resveratrol Sustains Insulin-Degrading Enzyme Activity Toward Aβ42, Claire A. Krasinski, Valerie A. Ivancic, Qiuchen Zheng, Donald E. Spratt, Noel D. Lazo

Chemistry

Alzheimer's disease (AD), the most common cause of dementia in the elderly, is the sixth leading cause of death in the United States. We hypothesize that the impaired clearance of Aβ42 from the brain is partly responsible for the onset of sporadic AD. In this work, we evaluated the activity of insulin-degrading enzyme (IDE) toward Aβ42 in the presence of resveratrol, a polyphenol found in red wine and grape juice. By liquid chromatography/mass spectrometry, we identified initial cleavage sites in the absence and presence of resveratrol that carry biological relevance connected to the amyloidogenic properties of Aβ42. Incubation with resveratrol …

Photocatalytic Activity: Experimental Features To Report In Heterogeneous Photocatalysis, Md. Ariful Hoque, Marcelo I. Guzman

Chemistry Faculty Publications

Heterogeneous photocatalysis is a prominent area of research with major applications in solar energy conversion, air pollution mitigation, and removal of contaminants from water. A large number of scientific papers related to the photocatalysis field and its environmental applications are published in different journals specializing in materials and nanomaterials. However, many problems exist in the conception of papers by authors unfamiliar with standard characterization methods of photocatalysts as well as with the procedures needed to determine photocatalytic activities based on the determination of “apparent quantum efficiencies” within a wavelength interval or “apparent quantum yields” in the case of using monochromatic …

Speciated Online Pm1 From South Asian Combustion Sources-Part 1: Fuel-Based Emission Factors And Size Distributions, J. Douglas Goetz, Michael R. Giordano, Chelsea E. Stockwell, Ted J. Christian, Rashmi Maharjan, Sagar Adhikari, Prakash V. Bhave, Puppala S. Praveen, Arnico K. Panday, Thilina Jayarathne, Elizabeth A. Stone, Robert J. Yokelson, Peter F. Decarlo

Chemistry and Biochemistry Faculty Publications

Combustion of biomass, garbage, and fossil fuels in South Asia has led to poor air quality in the region and has uncertain climate forcing impacts. Online measurements of submicron aerosol (PM1) emissions were conducted as part of the Nepal Ambient Monitoring and Source Testing Experiment (NAMaSTE) to investigate and report emission factors (EFs) and vacuum aerodynamic diameter (dva) size distributions from prevalent but poorly characterized combustion sources. The online aerosol instrumentation included a qmini aerosol mass spectrometer (mAMS) and a dual-spot eight-channel aethalometer (AE33). The mAMS measured non-refractory PM1 mass, composition, and size. The AE33-measured black carbon (BC) mass and …

Novel Antibacterial Compounds And Methods Of Making And Using Same, Amit Basu, Christopher W. Reid, Mary Margaret O'Connor, Ethan Lindsay Magno, Mitchell Evan Jamieson, Ryan Daniel Miller

Science and Technology Department Faculty Journal Articles

No abstract provided.

Unexpected Effects Of Inorganic Phosphate Glass On Crystallization And Thermo-Rheological Behavior Of Polyethylene Terephthalate, Kyoungtae Kim, Shahab Kashani Rahimi, Todd M. Alam, Eric G. Sorte, Joshua U. Otaigbe

Faculty Publications

The effects of ultra-low glass transition temperature (T_g) phosphate glass (Pglass) on the thermal, morphological, rheological, mechanical, and crystallization properties of hybrid Pglass/poly(eththylene terephthalate)(PET) were investigated. Nano- and micro-scale distribution of the Pglass in the PET polymer matrix was observed. The polydispersed Pglass in the PET matrix functioned as a nucleation agent, resulting in increasing crystallization temperature. The Pglass in the PET matrix decreased the T_g, indicating a plasticizing effect of the Pglass in the hybrids that was confirmed by the significantly decreased complex viscosity of the PET matrix. In addition, with increasing temperature, a non-terminal …

Reactive Iron Mineral Coatings In Redox Transition Zones And Their Impact On Natural Attenuation, Lisa Axe

Sustainability Seminar Series

Reactive Fe mineral coatings play an important role in contaminant attenuation in redox transition zones at sites with subsurface contamination. An anaerobic 60 foot core was collected from the Chambers Works Site in Deepwater, NJ. Working in a glovebox, two-inch subsamples were used to evaluate redox transition zones using bulk composition, redox potential, pH, VOCs in the headspace, as well as abundant bacteria. A number of redox transition zones were identified and further studied with a suite of complementary analyses to characterize the surface chemistry. Analyses have included sequential extraction (phases and speciation), x-ray diffraction (mineralogy), x-ray fluorescence (composition), fieldemission …

Reaction Optimization Of Pyrazinoquinoxaline Based Organic Semiconductor With Cruciform Shape, Marco Valverde Paredes, Dong-Chan Lee

LSAMP Poster Presentations

In this work, an optimum reaction condition was established to synthesize a pyrazinoquinoxaline based organic semiconductor with cruciform shape.

Multielectron Redox Chemistry Of Transition Metal Complexes Supported By A Non‐Innocent N3p2 Ligand: Synthesis, Characterization, And Catalytic Properties, Denan Wang, Danushka M. Ekanayake, Sergey V. Lindeman, Cláudio N. Verani, Adam T. Fiedler

Chemistry Faculty Research and Publications

A new redox‐active, diarylamido‐based ligand (L^N3P2) capable of κ⁵‐N,N,N,P,P chelation has been used to prepare a series of complexes with the general formula [M^II(L^N3P2)]X, where M = Fe (1; X = OTf), Co (2; X = ClO₄), or Ni (3; X = ClO₄). The diarylamido core of monoanionic L^N3P2 is derived from bis(2‐amino‐4‐methylphenyl)amine, which undergoes condensation with two equivalents of 2‐(diphenylphosphanyl)benzaldehyde to provide chelating arms with both arylphosphine and imine donors. X‐ray structural, magnetic, …

Synthesis And Characterization Of Transition Metal Based Nanocomposites For Orr In Fuel Cell Applications, Hunter Austin Wayland

Theses and Dissertations

Development of economically viable platinum alternatives for polymer electrolyte membrane fuel cells is a fundamental step towards large-scale commercialization efforts, which aim to reduce reliance on non-renewable energy resources. This work explores the synthesis, characterization, and application of graphene supported cobalt(III) and iron(III) based MN4 complexes for oxygen reduction, and farther investigates the potential for gains in performance and enhanced stability following coating with a bioinspired self- assembling polymer, polydopamine. The nanocomposites were characterized using a variety of electron microscopy and spectroscopy techniques, and their electrochemical performance was assessed using a potentiostat/galvanostat. The polymer-uncoated nanocomposites were found to reduce oxygen …

Au@H-Al2o3 Analogic Yolk–Shell Nanocatalyst For Highly Selective Synthesis Of Biomass-Derived D-Xylonic Acid Via Regulation Of Structure Effects, Jiliang Ma, Zewei Liu, Junlong Song, Linxin Zhong, Dequan Xiao, Hongxia Xi, Xuehui Li, Runcang Sun, Xinwen Peng

Chemistry and Chemical Engineering Faculty Publications

Selective oxidation of biomass-based monosaccharides into value-added sugar acids is highly desired, but limited success of producing D-xylonic acid has been achieved. Herein, we report an efficient catalyst system, viz., Au nanoparticles anchored on the inner walls of hollow Al₂O₃ nanospheres (Au@h- Al₂O₃), which could catalyze the selective oxidation of D-xylose into D-xylonic acid under base-free conditions. The mesoporous Al₂O₃ shell as the adsorbent first adsorbed D-xylose. Then, the interface of Au nanoparticles and Al₂O₃ as active sites spontaneously dissociated O₂, and …

Influence Of Phosphate On Tungstate Sorption On Hematite: A Macroscopic And Spectroscopic Evaluation Of The Mechanism, Bryan Sallman, Sudipta Rakshit, Grégory Lefèvre

Agricultural and Environmental Sciences Faculty Research

The environmental fate of the tungstate (VI) oxyanion [ e.g. mono tungstate and several polytungstate, generally expressed by W (VI)] is largely controlled by sorption on soil minerals, especially on iron oxide minerals. Molecular scale evaluation of W (VI) retention on iron oxides in the presence of competing oxyanions is scarce in literature. Here we report surface interaction mechanisms of W (VI) on hematite in the presence of phosphate (P) using macroscopic and in situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopic experiments. Batch sorption experiments were conducted using 2 g L−1 hematite and 100 μM W (VI) and …

Molecular And Physical Characteristics Of Aerosol At A Remote Free Troposphere Site: Implications For Atmospheric Aging, Simeon Schum, Bo Zhang, Katja Džepina, Paolo Fialho, Claudio Mazzoleni, Lynn Mazzoleni

Department of Chemistry Publications

Aerosol properties are transformed by atmospheric processes during long-range transport and play a key role in the Earth's radiative balance. To understand the molecular and physical characteristics of free tropospheric aerosol, we studied samples collected at the Pico Mountain Observatory in the North Atlantic. The observatory is located in the marine free troposphere at 2225m above sea level, on Pico Island in the Azores archipelago. The site is ideal for the study of long-range-transported free tropospheric aerosol with minimal local influence. Three aerosol samples with elevated organic carbon concentrations were selected for detailed analysis. FLEXPART retroplumes indicated that two of …

Phosphonium Hydrogels For Controlled Release Of Ionic Cargo., Tristan D Harrison, Paul J Ragogna, Elizabeth R Gillies

Chemistry Publications

We describe the synthesis of three different phosphonium salts and their reaction with poly(ethylene glycol) dimethacrylate to create cationic hydrogels. The hydrogels were loaded with an anionic dye and an anionic anti-inflammatory drug through ionic interactions and compared with an analogous ammonium gel. The release rates of these anions depended on their structure and pKa values, as well as the pH and ionic strength of the release medium.

Dft-Assisted Design And Evaluation Of Bifunctional Amine/Pyridine-Oxazoline Metal Catalysts For Additions Of Ketones To Unactivated Alkenes And Alkynes, Eric Greve, Jacob D. Porter, Chris Dockendorff

Chemistry Faculty Research and Publications

Bifunctional catalyst systems for the direct addition of ­ketones to unactivated alkenes/alkynes were designed and modeled by density functional theory (DFT). The designed catalysts possess bidentate ligands suitable for binding of pi-acidic group 10 metals capable of activating alkenes/alkynes, and a tethered organocatalyst amine to ­activate the ketone via formation of a nucleophilic enamine intermediate. The structures of the designed catalysts before and after C–C bond formation were optimized using DFT, and reaction steps involving group 10 metals were predicted to be significantly exergonic. A novel oxazoline precatalyst with a tethered amine separated by a meta-substituted benzene spacer was synthesized …

Speciation Of Technetium In Carbonate Media Under Helium Ions And Γ Radiation, Mohammad Ghalei, Johan Vandenborre, Frederic Poineau, Guillaume Blain, Pier-Lorenzo Solari, Jerome Rôques, Ferid Haddad, Massoud Fattahi

Chemistry and Biochemistry Faculty Research

Technetium carbonates complexes produced by chemical, electrochemical and radiolytic methods have been studied by UV-Visible, X-ray Absorption Fine Structure (XAFS) and Density Functional Theory methods. The (NH4)2TcCl6 salt was dissolved in 2 M KHCO3. The resulting purple solution was analyzed by XAFS and UV-Visible spectroscopy. The UV-Visible spectra exhibits a band centered at 515 nm. The XAFS results were consistent with the presence of polymeric species containing the [Tc2(μ−O)2]4+ core coordinated to carbonate ligand. Concerning the electrochemical methods, the pertechnetate anion was electrochemically reduced in concentrated carbonate solution [(CO32−)=5 M and (HCO3−)=0.5 M]. For the radiolytic reduction, the speciation of …

Adapting Cell-Free Protein Synthesis As A Platform Technology For Education, Grace W. Chu, Max Z. Levine, Nicole E. Gregorio, Javin P. Oza

STAR Program Research Presentations

Cell-free protein synthesis (CFPS) has emerged as an enabling biotechnology for research and biomanufacturing as it allows for the production of protein without the need for a living cell. Applications of CFPS include the construction of libraries for functional genomics and structural biology, the production of personalized medicine, and the expression of virus-like particles. The absence of a cell wall provides an open platform for direct manipulation of the reaction conditions and biological machinery. This project focuses on adapting the CFPS biotechnology to the classroom, making a hands-on bioengineering approach to learning protein synthesis accessible to students grades K-16 through …

Nanoparticles And Their Use In Cancer Imaging, Prevention And Treatment, George Gray

Chemistry & Biochemistry Student Projects

No abstract provided.

Tomatine And Furocoumarins: Toxins In Commonly Consumed Plants, Julia Noonan

Chemistry & Biochemistry Student Projects

No abstract provided.

Synthesis Of A Platinum Triamine Complex And Its Interactions With Guanosine 5’- Monophosphate And N-Acetylmethionine, Manal El Masri

Masters Theses & Specialist Projects

Cisplatin (cis-diamminedichloroplatinum(II)) and its analogs are known to form 1,2-intrastrand cross-links with guanine bases that lead to DNA distortion and are responsible for cytotoxicity. Reaction with proteins, especially at methionine residues, could also be responsible for cytotoxicity (Sandlin, R. D. et al. 2010). A new tridentate platinum(II) complex with a piperazine ring was successfully designed and synthesized. In this complex, the platinum is coordinating to all three nitrogens of (1,2- dimethylaminoethylpiperazine), which makes it a Platinum triamine compound. A series of chemical reactions of this compound with guanosine 5’-monophosphate (5’-GMP) and N-acetylmethionine (N-AcMet) were conducted under different conditions. Reactions with …

Synthesis And Characterization Of Graphene-Family Mesoporous Nanomaterials For Themal Energy Harvesting And Sensing Applications, Romney Meek

Masters Theses & Specialist Projects

Graphene-family nanomaterials (GFNs) have attracted a great deal of attention both in academia and in industry for a range of applications relevant for homeland security. In this thesis, an array of graphene-based hybrid materials and aerogels are synthesized for use as novel thermo-electrochemical energy harvesters and for ascorbic acid biosensing devices. The graphene-family nanomaterials include graphene oxide-GO, thermally reduced GO-rGOth, nitrogenated functionalized graphene-NFG, graphene aerogel-GA, nitrogen-doped graphene aerogel-NGA, multi-walled carbon nanotube aerogel-MWCNT, single-walled carbon nanotube aerogel-SWCNT, graphene and nanotube combined ‘hybrid’ aerogels-Gr:(SW/MW)CNT of various ratios, along with multilayered nanostructured architectures such as gold (AuNP) and silver nanoparticles (AgNP) decorated NFG …

Data On Ion Composition And X-Ray Diffraction Patterns Of Biosolids From Wastewater Treatment Plants In Lufkin And Nacogdoches, Texas, Usa, Kefa Karimu Onchoke, Christopher M. Franclemont, Paul W. Weatherford

Faculty Publications

The data presented in this article is related to the research article entitled, “Structural Characterization and Evaluation of Municipal Wastewater Sludge (Biosolids) from two Rural Wastewater Treatment Plants in East Texas, USA”, Onchoke, KK, Franclemont, C.M., Spectrochim. Acta A, In press[1]. The XRD profiles and composition of biosolids from wastewater treatment plant is presented. This study describes the composition of XRD crystalline phase patterns of the wastewater sludge. After the removal of the Ka2 peaks the d-spacing and hkl values were determined. In addition, the ion chromatographic profile of the seven anions (NO₃^-, NO_{2 …}

Developing A New Sensing Technology For Double-Stranded Dna Detection Utilizing Engineered Zinc Finger Proteins And Nanomaterials, Dat Thinh Ha

Masters Theses & Specialist Projects

A specific double-stranded DNA sensing system is of great interest for diagnostic and other biomedical applications. Zinc finger domains, which recognize double-stranded DNA, can be engineered to form custom DNA-binding proteins for recognition of specific DNA sequences. As a proof of concept, a sequence-enabled reassembly of TEM-1 β- lactamase system (SEER-LAC) was previously demonstrated to develop zinc finger protein (ZFP) arrays for the detection of a double-stranded bacterial DNA sequence. Here, we implemented the SEER-LAC system to demonstrate the direct detection of pathogenspecific DNA sequences present in E. coli O157:H7 on the lab-on-a chip. ZFPs customdesigned to detect shiga toxin …

Responses Of Daphnia Magna To Chronic Exposure Of Cadmium And Nickel Mixtures, Edgar Pérez, Tham C. Hoang

School of Environmental Sustainability: Faculty Publications and Other Works

The present study assessed the chronic toxicity of cadmium (Cd) and nickel (Ni) mixtures to Daphnia magna. Using a titration design, Ni concentrations of 20, 40, 80, 100, 120, 140, and 160 μg/L were tested alone and simultaneously titrated in increments against a constant concentration of 1.5 μg/L Cd. The results demonstrated that Cd at 1.5 μg/L was highly toxic to D. magna, and Ni alone concentrations ≥80 μg/L were toxic to D. magna survival, reproduction, and growth. No Ni alone concentration was found to induce a toxic effect on undeveloped embryos and the time to first brood. …

The Aromatization Of Propene Via Nano-Size Hzsm-5, Wayne Seames, Swapnil Fegade, Inna Sakodynskaya, Darrin Muggli, Brian Tande, Alena Kubatova, Evguenii Kozliak

Chemistry Faculty Publications

Zeolite (ZSM) catalysts are known to convert small-size alkenes, e.g., propene, into aromatic hydrocarbons, specifically benzene, toluene and xylenes (BTX), with both high efficiency and specificity. The efficiency of conventional and hierarchical nano-size ZSM-5 for propene aromatization was compared in this study using a Design of Experiments (DOE) approach combined with detailed product analysis. Contrary to our expectations, the former showed a significantly greater BTX yield than the latter. Analysis of the obtained data by DOE and additional experiments with soybean oil cracking using both catalyst types indicated that a reason for the observed reduced activity of nano-scale zeolites may …

Chemistry Matters Fall 2018, Otterbein University Chemistry Department

Chemistry Matters Department Newsletter

In this issue:

Fall 2017 Sabbatical in Cambridge, UK/New Study Abroad Course in Chemistry/Students and Faculty Present at the 255th ACS National Meeting in New Orleans, March 2018/Exploring Biodiesel Chemistry in Multiple Lab Courses

Synthesis And Evaluation Of Protein-Phenylboronic Acid Conjugates As Lectin Mimetics, Joshua Whited, Czharena Kay Rama, Xue-Long Sun

Chemistry Faculty Publications

Glycan-binding molecules, such as lectins, are very important tools for characterizing, imaging, or targeting glycans and are often involved in either physiological or pathological processes. However, their availability is far less compared to the diversity of native glycans. Therefore, development of lectin mimetics with desired specificity and affinity is in high demand. Boronic acid reacts with 1,2- and 1,3-diols of saccharides in aqueous media through reversible boronate ester formation and are regarded as synthetic lectin mimetics. In this study, bovine serum albumin (BSA)-phenylboronic acid (PBA) conjugates were synthesized in a density-controlled manner by targeting both aspartic and glutamic acids to …

Regulation Of Kv11.1 Potassium Channel C-Terminal Isoform Expression By The Rna-Binding Proteins Hur And Hud, Qiuming Gong, Matthew R. Stump, Zhengfeng Zhou

Faculty Publications - Department of Biological & Molecular Science

The potassium voltage-gated channel subfamily H member 2 (KCNH2) gene encodes the Kv11.1 potassium channel, which conducts the rapidly activating delayed rectifier current in the heart. KCNH2 pre-mRNA undergoes alternative polyadenylation and forms a functional, full-length Kv11.1a isoform if exon 15 is polyadenylated or a nonfunctional, C-terminally truncated Kv11.1a-USO isoform if intron 9 is polyadenylated. The molecular mechanisms that regulate Kv11.1 isoform expression are poorly understood. In this study, using HEK293 cells and reporter gene expression, pulldown assays, and RNase protection assays, we identified the RNA-binding proteins Hu antigen R (HuR) and Hu antigen D (HuD) as regulators of Kv11.1 …

Polymer Coated Gold-Ferric Oxide Superparamagnetic Nanoparticles For Theranostic Applications, Muhammad Raisul Abedin, Siddesh Umapathi, Harika Mahendrakar, Tunyaboon Laemthong, Holly Coleman, Denise Muchangi, Santimukul Santra, Manashi Nath, Sutapa Barua

Chemistry Faculty Research & Creative Works

Background: Engineered inorganic nanoparticles (NPs) are essential components in the development of nanotechnologies. For applications in nanomedicine, particles need to be functionalized to ensure a good dispersibility in biological fluids. In many cases however, functionalization is not sufficient: the particles become either coated by a corona of serum proteins or precipitate out of the solvent. We show that by changing the coating of magnetic iron oxide NPs using poly-l-lysine (PLL) polymer the colloidal stability of the dispersion is improved in aqueous solutions including water, phosphate buffered saline (PBS), PBS with 10% fetal bovine serum (FBS) and cell culture medium, and …

Thermochemistry: Heat Of Neutralization And Hess’S Law [Chemistry], Kevin Mark, Phil Mercier, Janet Gonzalez, Burl Yearwood

Open Educational Resources

The General Chemistry 1 (SCC 201) course has been designated for the core competency of Inquiry and Problem Solving along with the Written Communication Ability. These abilities are best observed in the laboratory section of the course where SCC 201 students are asked to submit weekly written lab reports that range in chemistry topics from chemical structures to the chemical analysis of polluted environments. SCC 201 will be implementing a new experiment in the laboratory portion of the course entitled, “Thermochemistry: Heat of Neutralization and Hess’s Law.” The design of the experiment incorporates many elements of LaGCC’s Core Competencies and …