Chemistry Commons^™

Synthesis Of Modified Polydiacetylene (Pda) Polymers For The Detection Of Infective Species, Shan Hazoor

Chemistry & Biochemistry Theses - Archive

Polydiacetylene (PDAs) polymers are receiving more attention as biosensors due to their ability to change absorption and fluorescence properties upon sensing various chemical and physical changes in the environment. In chapter 1, the introduction to PDA polymers have been described along with their optical properties. Diacetylene (DA) monomers can be synthesized to tune photochemical and sensing properties of PDAs. DAs self-polymerize upon UV-irradiation and show fluorescence upon stimulation. They have been reported as biological and chemical sensors, capable of visible color changes (e.g. blue to red) upon certain environmental factors such as temperature, pH changes, and upon binding with biological …

Radiolysis Of Solid-State Nitrogen Heterocycles Provides Clues To Their Abundance In The Early Solar System, Phillip G. Hammer, Ruiqin Yi, Isao Yoda, H. James Cleaves, Michael P. Callahan

Chemistry and Biochemistry Faculty Publications and Presentations

We studied the radiolysis of a wide variety of N-heterocycles, including many of biological importance, and find that the majority are remarkably stable in the solid-state when subjected to large doses of ionizing gamma radiation from a ⁶⁰Co source. Degradation of N-heterocycles as a function of dose rate and total dose was measured using high performance liquid chromatography with UV detection. Many N-heterocycles show little degradation when γ-irradiated up to a total dose of ~1 MGy, which approximates hundreds of millions of years’ worth of radiation emitted in meteorite parent bodies due to slow radionuclide decay. Extrapolation of …

Indole-3-Glycerol Phosphate Synthase Ligand Binding Interactions, Oshane Thomas

Theses, Dissertations and Culminating Projects

Indole-3-glycerol phosphate synthase (IGPS) catalyzes the irreversible ring closure of 1-(ocarboxyphenylamino)- 1-deoxyribulose 5- phosphate (CdRP) into indole-3-glycerol phosphate (IGP) during the fourth step in tryptophan biosynthesis. Analysis of the crystal structure of IGPS from Mycobacterium tuberculosis (MtIGPS) hinted the importance of Lys119 for binding or catalysis. Lys110 from sulfolobus sulfataricus IGPS (ssIGPS) that aligns with Lys119 from MtIGPS, was proposed to be a general acid for the proton transfer that initiates the ring closure and decarboxylation of CdRP. To study the importance of Lys119 in the chemical mechanism for MtIGPS, an amino acid change was made at this position to …

The Effects Of Active Site And Allosteric Residues On Catalysis And Inhibitor Selectivity In The Bacillus Stearothennophilus Dihydrofolate Reductase, Tyler Eck

Theses, Dissertations and Culminating Projects

In drug discovery, building a comprehensive picture of the binding events between a drug and its enzyme target can be useful, especially in the development of new drugs or predicting the effect of a drug on a similar target from the same protein family. It is well known that a drug's selectivity is influenced by its interactions with amino acid residues within the active site, but contributions from residues situated away from (distal to) the active site are less well understood. Using a novel predictive approach PAnPredictor that employs sequence alignments, we have previously predicted residue positions in the dihydrofolate …

Speciation Of Aluminum During The Formation Of Aluminum Chlorohydrate: A Combined Kinetic And Mass Spectrometry Study, Mohammad Fakrul Islam

Chemistry & Biochemistry Dissertations - Archive

Speciation of Aluminum During the Formation of Aluminum Chlorohydrate: A Combined Kinetic and Mass Spectrometry Study Mohammad Fakrul Islam, Ph.D. The University of Texas at Arlington, 2019 Supervising Professor: Frederick M. MacDonnell Aluminum chlorohydrate (ACH) is synthesized in a heterogeneous reaction of aluminum ingots or pellets with aqueous hydrochloric acid. This exothermic reaction produces copious amounts of hydrogen gas and ultimately generates product grade aluminum chlorohydrate when the specific gravity of the solution reaches 1.33-1.35. Other product specifications include 3.5-4.0 pH, 7.9-8.4 wt.% chloride, 23-24 wt.% Al2O3, low turbidity (<50 NTU) and high basicity (>83%). A relative study of aluminum ingot with pellet shows …

Synthesis And Characterization Of Porous And Dense Silicon Oxycarbide (Sico) Materials, Susana Isabel Aguirre-Medel

Chemistry & Biochemistry Dissertations - Archive

In the field of materials discovery, the appearance of Polymer Derived Ceramics (PDC’s) over 30 years ago represents a breakthrough in materials science and development. The PDC route represents significant advantages in ceramic science and technology. This route enables synthesis of bulk ceramics, fibers, porous ceramics and coating materials that are stable at temperatures up to 2000 oC. PDCs can be separated into binary and ternary systems. Examples of binary systems are silicon carbide (SiC) and silicon nitride (Si3N4 ). Ternary systems include silicon carbonitride (SiCN) and silicon oxycarbide (SiCO). One very important feature of PDCs is their crystallization resistance. …

Improved Sample Preparation Method For Lc-Ms/Ms Based Cellular Proteomics And Co-Immunoprecipitation Cross-Linking Proteomics Study Of Toll-Like Receptor 4, A.D.A Shahinuzzaman

Chemistry & Biochemistry Dissertations - Archive

Mass spectrometry-based methods are now widely practiced in large-scale proteomics studies. Unfortunately, sample loss in proteomics hinders complex analysis in proteomics, and immune precipitation (IP) mass spectrometry-based proteomics is getting popular in studying comprehensive signaling pathways. To contribute to these demanding research areas, I have completed two experimental projects in this thesis. In our first project, we developed a sample preparation method to identify proteins from detergent-containing cell lysate samples efficiently. Methanol-chloroform purification is an essential step in LC-MS/MS based cellular proteomics experiments since it removes salts and detergents from the sample. The cell lysis buffer contains a high concentration …

Analytical Methods For Solving Complex Problems In Food And Environmental Science, Jamie Lynn York

Chemistry & Biochemistry Dissertations - Archive

Complex samples can be challenging for analysis in a number of different ways. Food and environmental samples can be particularly difficult due to their non-uniformity from sample to sample, possible unknown contents, and complexity in terms of their number of constituents and range of abundances of different species. To overcome challenges faced with the analysis of complex samples, intricate sample handling and processing techniques need to be tailored in order to build optimal methods. These procedures can include sample preparation techniques, on-line sample clean-up, and/or tools that the instrument has to offer. Each complex sample needs to be assessed for …

Liquid Flow Measurement: From Inline Hydrocephalus Shunt Flow Monitor To Flowmetry In The Nanoliter/Minute Scale, Chuchu Qin

Chemistry & Biochemistry Dissertations - Archive

This dissertation primarily focuses on designing and developing novel sensing strategies and instruments for ultra-low liquid flow measurement. An inline thermal flow sensor based on a single common thermistor has been developed to quantitatively measures cerebral spinal fluid flow rate in hydrocephalus shunt. The technique facilitates the diagnosis of shunt failure due to blockage or over-drainage. This allows timely remediation of shunt-flow malfunctions, thereby avoiding severe complications that can arise. The thermal flow sensor utilizes the bidirectional ability of the thermistor to both heat the surrounding and to sense the temperature. The net temperature change from immediately before and after …

Modification And Optimization Of Conducting Polymer-Modified, Redox-Magnetohydrodynamics (R-Mhd) Pumping For Enhanced And Sustained Microfluidics Applications, Md Foysal Zahid Khan

Graduate Theses and Dissertations

In this work, a novel microfluidic pumping approach, redox-magnetohydrodynamics (R-MHD) has improved by materials and device optimization to use in lab-on-a-chip applications. In R-MHD, magnetic flux (B) and ionic current density (j) interacts to generate body force (FB) in between active electrodes, according to the equation FB = j×B. This unique fluid pumping approach is scalable, tunable, generates flat flow profile, and does not require any channels or valves. Pumping performance, such as speed scales with the ionic current density (j) and duration depends on the total charge (Q). The ionic current density (j) results from the conversion of electronic …

Monitoring Tropospheric Gases With Small Unmanned Aerial Systems (Suas) During The Second Cloudmap Flight Campaign, Travis J. Schuyler, Sean C. C. Bailey, Marcelo I. Guzman

Chemistry Faculty Publications

Small unmanned aerial systems (sUAS) are a promising technology for atmospheric monitoring of trace atmospheric gases. While sUAS can be navigated to provide information with higher spatiotemporal resolution than tethered balloons, they can also bridge the gap between the regions of the atmospheric boundary layer (ABL) sampled by ground stations and manned aircraft. Additionally, sUAS can be effectively employed in the petroleum industry, e.g., to constrain leaking regions of hydrocarbons from long gasoducts. Herein, sUAS are demonstrated to be a valuable technology for studying the concentration of important trace tropospheric gases in the ABL. The successful detection and quantification of …

Computational Studies Of Thermal Properties And Desalination Performance Of Low-Dimensional Materials, Yang Hong

Department of Chemistry: Dissertations, Theses, and Student Research

During the last 30 years, microelectronic devices have been continuously designed and developed with smaller size and yet more functionalities. Today, hundreds of millions of transistors and complementary metal-oxide-semiconductor cells can be designed and integrated on a single microchip through 3D packaging and chip stacking technology. A large amount of heat will be generated in a limited space during the operation of microchips. Moreover, there is a high possibility of hot spots due to non-uniform integrated circuit design patterns as some core parts of a microchip work harder than other memory parts. This issue becomes acute as stacked microchips get …

Quantum Chemical Calculations Applied To Somo–Homo Conversion And Vibrationally Averaged Nmr Shielding Parameters, Erik Johnson

Department of Chemistry: Dissertations, Theses, and Student Research

The inversion of frontier orbitals of free radicals was studied using density functional theory calculations in Gaussian 09. Comparisons of images of orbitals in GaussView was used to assess the relative positions of singly occupied and doubly occupied orbitals and to determine which was the highest in energy. A variety of organic free radicals were studied including several radical anions and also a neutral radical. It was found that cross-conjugation appears to be a factor in whether or not molecules show SOMO-HOMO conversion. Cross-conjugation is when two unsaturated groups are conjugated to a third unsaturated group but are not conjugated …

Design And Synthesis Of Stable Aminyl And Nitroxide Radical Precursors, Joshua Bryan Lovell

Department of Chemistry: Dissertations, Theses, and Student Research

Aminyl diradicals with sterically-hindered tert-butyl groups have yet to be fully investigated for their increased stability due to their difficulty in synthesis. The first chapter of this thesis details design and synthesis towards sterically-hindered aminyl radical and diradical precursors.

Structural features effecting nitroxide radical stability have been well investigated except for the impact on the ring-size of stability of nitroxides towards reduction by ascorbate. Two 7-membered nitroxides derived from TEMPONE and TEMPOL have been synthesized and characterized. The alcohol nitroxide shows increased stability towards reduction by ascorbate compared to the corresponding TEMPOL, while the other nitroxide shows decreased stability compared …

A Foundational Study Of A New Synthetic Method Of Metal Carbonyl Clusters, Miles Shaun Millard

Boise State University Theses and Dissertations

“Traditional” Metal Carbonyl Clusters (MCCs) contain a framework of multiple metal atoms bound together through formal metal-metal (M-M) bonds. Current methods of synthesis result in different cluster sizes and lack a method to control growth. This project proposes a new method of MCC synthesis to build larger structures utilizing secondary non-covalent interactions to develop “non-traditional” MCCs. The N,N’-diarylurea moiety is a strong hydrogen bond donor/acceptor that can induce self-assembly into larger secondary structures. The union of metal carbonyl and urea chemistry provides a potential method of “non-traditional” MCC synthesis. This proof of concept experiment will elucidate foundational information such …

Investigating Soluble Organic Compounds In Aqueously Altered Carbonaceous Chondrites By Ultrahigh Resolution Orbitrap Mass Spectrometry, Patrick Kyle Schwartz

Boise State University Theses and Dissertations

Most meteorites are fragments from main-belt asteroids and contain extremely primitive materials that have preserved a compositional record of the early Solar System. After the formation of their parent bodies, carbonaceous chondrites experienced secondary modification from thermal metamorphism and/or aqueous alteration. Secondary processing likely influenced the synthesis and/or final composition of organic compounds in parent bodies; thus, these effects may be elucidated from the study of different meteorites. Although the role of aqueous alteration has been investigated for a few specific classes of compounds (such as amino acids), the effect of aqueous alteration on the full inventory of organic compounds …

Structural Characterization Of A Prolyl Aminodipeptidase (Pepx) From Lactobacillus Helveticus, Deanna Dahlke Ojennus

Chemistry Faculty Scholarship

Prolyl aminodipeptidase (PepX) is an enzyme that hydrolyzes peptide bonds from the N-terminus of substrates when the penultimate amino-acid residue is a proline. Prolyl peptidases are of particular interest owing to their ability to hydrolyze food allergens that contain a high percentage of proline residues. PepX from Lactobacillus helveticus was cloned and expressed in Escherichia coli as an N-terminally His-tagged recombinant construct and was crystallized by hanging-drop vapor diffusion in a phosphate buffer using PEG 3350 as a precipitant. The structure was determined at 2.0 Å resolution by molecular replacement using the structure of PepX from Lactococcus lactis (PDB entry …

Andrews University Chemistry Lecture Series, Desmond Murray

Andrews Agenda: Campus News

No abstract provided.

Removal Of As (Iii) And As (V) From Potable Water Using Zno Nanoparticles, Grecia Torreblanca Baez

Theses and Dissertations

Heavy metal and toxic element contamination of the environment has been increasing with increasing industrialization. Arsenic has become an element of particular concern because of its toxicity, which is oxidation state dependent. As(III) is observed to be much more toxic than As(V), as well the removal is more difficult than As(V) in traditional water treatment technology. In the present study, As (III) and As(V) removal was investigated using a zinc oxide nanomaterial that was synthesized using a titration/precipitation technique, and characterized using powder x-ray diffraction. In the present study, the kinetics of adsorption, the adsorption isotherms as well as the …

The Investigation Of Secondary Particle Formation Initiated By Non-Prototypical Sources And The Role Of Amines In The Atmosphere, Emily Burrell

Theses and Dissertations

This dissertation is a collection of works that investigate non-prototypical sources leading to new particle formation in the atmosphere. Particles play a major role in atmospheric chemistry. For example, particles are a component of smog and are commonly found in high concentrations under conditions of atmospheric inversions. In order to reconcile the difference between measured and modeled particle concentrations new mechanisms from non-prototypical sources for particle formation need to be determined. Formation of particles has frequently been modeled using classical nucleation theory (CNT). The first step in CNT is the nucleation step where molecular clusters form. In a second step, …

Preparation, Functionalization, And/Or Characterization By X-Ray Photoelectron Spectroscopy Of Carbon Surfaces For Biosensors And Other Materials, Varun Jain

Theses and Dissertations

My dissertation is primarily divided into two parts. The first deals with the preparation, functionalization, and characterization of carbon surfaces prepared by direct current magnetron sputtering (DCMS) and high power impulse magnetron sputtering (HiPIMS) as substrates for bioarrays. Part two discusses applications of XPS peak fitting in surface chemical analysis. Chapter 1, the introduction, includes (i) a discussion of the construction of bioarrays and the preparation of sputtered surfaces, e.g., by DCMS and HiPIMS, and also functionalization (bioconjugate) chemistry with special emphasis on the importance of covalent functionalization of surfaces, and (ii) a discussion of the surface characterization techniques and …

Using Novel Spectroscopy Tool To Study Organized Self-Assemblies, Mohammad Rafe M Bin Hatshan

Dissertations

Organized self-assemblies are the cornerstones for countless biological processes and are integral parts of lipids, proteins, carbohydrates, nucleic acids, and cell membranes. Several man-made organized assemblies also play a vital role in interdisciplinary sciences that include micelles, reverse micelles, polymers, polyelectrolytes etc. Weak chemical interactions such as hydrogen bonding, p-p stacking, hydrophilic-hydrophobic and electrostatics often result in interesting organized self-assemblies. Understanding organized self-assemblies provides a huge opportunity to mimic naturally occurring biological macromolecules, design materials and develop strategies for specific applications. Several techniques are routinely used to understand the organized self-assemblies, and optical techniques play an important role in most …

Amyloidogenicity Of Naturally Occurring Full-Length Animal Iapp Variants, Larry M. Palato, Shannon Pilcher, Alissa Oakes, Arleen Lamba, Jaris Torres, Litza I. Ledesma Monjaraz, Crystabel Munoz, Edward Njoo, Dillon J. Rinauro, Kate Alexandra Menefee, Angela Tun, Betssy L. Jauregui, Sarah Shapiro, Olivia H. Nossiff, Eileen Olivares, Kevin Chang, Viviane Nguyen, Luiza A. Nogaj, David A. Moffet

Chemistry and Biochemistry Faculty Works

Aim: To identify naturally occurring variants of IAPP capable of inhibiting the aggregation of human IAPP and protecting living cells from the toxic effects of human IAPP. Background: The loss of insulin-producing β-cells and the overall progression of type 2 diabetes appears to be linked to the formation of toxic human IAPP (hIAPP, Islet Amyloid Polypeptide, amylin) amyloid in the pancreas. Inhibiting the initial aggregation of hIAPP has the potential to slow, if not stop entirely, the loss of β-cells and halt the progression of the disease. Objective: To identify and characterize naturally occurring variants of IAPP capable of inhibiting …

Synthesis, Characterization And Biological Evaluation Of Novel (S,E)-11-[2-(Arylmethylene) Hydrazono] Pyrrolo [2,1-C] [1,4] Benzodiazepine Derivatives, David Mingle

Electronic Theses and Dissertations

Pyrrolo [2,1-c] [1,4] benzodiazepine (PBD) is a class of natural products obtained from various actinomycetes which have both anti-tumor and antibiotic activities and can bind to specific sequences of DNA. PBD-dilactam was initially produced using isatoic anhydride and (L)-proline which was then converted to the PBD-thiolactam using Lawesson's reagent. Reaction of thiolactam with hydrazine in ethanol afforded PBD-11-hydrazinyl. Condensation of 11-hydrazinyl PBD with aldehydes possessing various substitutions was performed to obtain (S,E)-11-[2-(arylmethylene) hydrazono] pyrrolo [2,1-c] [1,4] benzodiazepine derivatives. ¹HNMR, ¹³C-NMR, DEPT, IR, GC-MS and X-ray crystallography were used for the characterization. Inhibition activity of the products …

Electrodeposition Of Hydrogen Molybdenum Bronze Films And Electrochemical Reduction Of Carbon Dioxide At Low Over Potentials, Sami Alharbi

Electronic Theses and Dissertations

Hydrogen molybdenum oxide, known has molybdenum bronze, is a material of interest due to catalyzing electron transfer reactions. Specifically, molybdenum bronze is an electrocatalyst toward carbon dioxide reduction. Electrochemical deposition from a peroxymolybdic acid solution is a method for preparing molybdenum bronze films. This work demonstrates reproducible electrodeposition on indium tin oxide substrates and conductive carbon paper. Film thickness depends on concentration, time and pH. After characterization by film thickness, resistance, XRD and XPS, the as deposited films served as the working electrode for electrochemical reduction of carbon dioxide in 0.1 M NaHCO₃. Ion chromatography determined formate resulting …

Organic-Inorganic Hybrid Materials For Piezoelectric/Triboelectric Nanogenerator, Aminur Rashid Chowdhury

Theses and Dissertations

Nanogenerator has been a major focus among researchers of recent time due to its versatile use in everyday life. Though the discovery of the piezoelectricity and the triboelectricity dates back to 19th century, the use of these phenomena has not been in practical use till 2006. In this study we demonstrate the practical application of piezoelectric and triboelectric nanogenerator comprised of different copolymer and piezoelectric ceramic. The largely known piezoelectric polymer Polyvinylidene fluoride (PVDF) has also been utilized. The enhancement of piezoelectric properties of PVDF has been achieved by utilizing surface activation of accommodating ceramic. The Li doped ZnO has …

Computational Studies Of High-Oxidation State Main-Group Metal Hydrocarbon C-H Functionalization, Clinton R. King

Theses and Dissertations

High-oxidation state main-group metal complexes are potential alternatives to transition metals for electrophilic C-H functionalization reactions. However, there is little known about how selection of the p-block, main-group metal and ligand impact C-H activation and functionalization thermodynamics and reactivity. Chapter 2 reports density functional theory (DFT) calculations used to determine qualitative and quantitative features of C-H activation and metal-methyl functionalization energy landscapes for reaction between high-oxidation state d10s0 InIII, TlIII, SnIV, and PbIV carboxylate complexes with methane. While the main-group metal influences the C-H activation barrier height in a periodic manner, the carboxylate ligand has a much larger quantitative impact …

Modification Of Chemical Vapor-Deposited Carbon Electrodes With Electrocatalytic Metal Nanoparticles Through A Soft Nitriding Technique, Enoch Amoah

Electronic Theses and Dissertations

Metal nanoparticles have been widely used for many catalytic and electrocatalytic applications due to their larger surface area-to-volume ratios and higher densities of active sites compared to bulk materials. This has resulted in much interest in understanding the electrocatalytic behavior of metal nanoparticles with respect to their structure. However, most research on this topic has employed collections of nanoparticles. Due to difficulties in controlling and characterizing particle loading and interparticle distance in nanoparticle ensembles, single nanoparticles studies have recently become a topic of great interest. In this study, a soft nitriding technique was applied to chemical vapor-deposited carbon ultramicroelectrodes (UMEs) …

Synthesis Of Diazonium N-(Perfluoroalkyl) Benzenesulfonimide Polymers For Proton Exchange Membrane Fuel Cells (Pemfcs), Helal Alharbi

Electronic Theses and Dissertations

The objective of the research is to synthesize the diazonium N-(perfluoroalkyl) benzenesulfonimide (PFSI)zwitterionicpolymers as electrolytes in polymerelectrolyte membrane (PEM) fuel cells. The proposed diazoniumPFSI zwitterionic polymer (I) is expected to enhance the thermal and chemical stability, increase the proton conductivity of electrolytes, and improve the catalyst efficiency for PEM fuel cells. Synthesis of the perfluorobenzoyl peroxide initiator, homopolymerization of perfluoro (3-oxapent-4-ene) sulfonyl fluoride,coupling reaction with4-sulfamonylacetanilide, couplingreaction with 4-nitrobenzene sulfonyl amide, n-deacetylation reaction, and diazotization reactionhave been carried outsuccessfully in the lab. The intermediate chemicals are characterized by GC-MS, IR, NMR, and GPC spectroscopies.

Peroxide Sensing Using Nitrogen-Doped And Platinum Nanoparticle-Modified Screen-Printed Carbon Electrodes, Chidiebere Ogbu

Electronic Theses and Dissertations

Nitrogen-doped carbon materials have garnered much interest due to their abilities to behave as electrocatalysts for reactions important in energy production (oxygen reduction) and biosensing (hydrogen peroxide reduction). Here, we demonstrate fabrication methods and determine electrocatalytic properties of nitrogen-doped screen-printed carbon (N-SPCE) electrodes. Nitrogen doping of graphite was achieved through a simple soft-nitriding technique which was then used in lab-formulated screen-printing inks to prepare N-SPCEs. N-SPCEs displayed good electrocatalytic activity, reproducibility and long term stability towards the electrochemical reduction of hydrogen peroxide. N-SPCEs exhibited a wide linear range (20 µM to 5.3 mM), reasonable limit of detection of 2.5 µM, …