Terrestrial and Aquatic Ecology Commons^™

Population Response Of Eastern Wild Turkey To Removal Of Wild Pigs, Matthew T. Mcdonough, Stephen J. Zenas, Robert A. Gitzen, Mark D. Smith, Kurt C. Vercauteren, Stephen S. Ditchkoff

United States Department of Agriculture Wildlife Services: Staff Publications

There is insufficient understanding of interspecific interactions with the eastern wild turkey (Meleagris gallopavo silvestris) and wild pigs (Sus scrofa). Wild pigs compete with wild turkeys and predate nests and adults; however, population‐level effects on wild turkeys are not clear. Using cameras, we assessed responses of wild turkey populations to wild pig removal in central Alabama, USA, from 2018–2021. We compared wild turkey relative abundance and occupancy on 3 large‐scale pigremoval treatment sites (3,407–5,531 ha) relative to a control site (2,510 ha) during 1 pre‐treatment year and 2 posttreatment years, with analyses including a covariate expressing the cumulative …

Genomic Characterization Of Highly Pathogenic H5 Avian Influenza Viruses From Alaska During 2022 Provides Evidence For Genotype-Specific Trends Of Spatiotemporal And Interspecies Dissemination, Christina A. Ahlstrom, Mia Kim Torchetti, Julianna Lenoch, Kimberlee Beckmen, Megan Boldenow, Evan J. Buck, Bryan Daniels, Krista Dilione, Robert Gerlach, Kristina Lantz, Angela Matz, Rebecca L. Poulson, Laura C. Scott, Gay Sheffield, David Sinnett, David E. Stallknecht, Raphaela Stimmelmayr, Eric Taylor, Alison R. Williams, Andrew M. Ramey

United States Department of Agriculture Wildlife Services: Staff Publications

The ongoing panzootic of highly pathogenic H5 clade 2.3.4.4b avian influenza (HPAI) spread to North America in late 2021, with detections of HPAI viruses in Alaska beginning in April 2022. HPAI viruses have since spread across the state, affecting many species of wild birds as well as domestic poultry and wild mammals. To better understand the dissemination of HPAI viruses spatiotemporally and among hosts in Alaska and adjacent regions, we compared the genomes of 177 confirmed HPAI viruses detected in Alaska during April–December 2022. Results suggest multiple viral introductions into Alaska between November 2021 and August or September 2022, as …

Wildlife Monitoring With Drones: A Survey Of End Users, Raymond B. Iglay, Landon R. Jones, Jared E. Elmore, Kristine O. Evans, Sathish Samiappan, Morgan B. Pfeiffer, Brad F. Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

Rapid advancements in technology often yield research inquiry into novel applications and drone (i.e., unoccupied aircraft systems or UAS) applications in wildlife management are no exception. We questioned the time lag between drone‐related research and end‐user assessments. We implemented an online, cross‐sectional survey of wildlife professionals to better understand current drone use and benefits or concerns, complemented by a review of contemporary peer‐reviewed and gray literature. We found little disparity between scientific inquiry and end‐user experiences (i.e., similar trends among concerns in published literature and survey results). Exploring new (i.e., advancements in computer vision) and refining original drone applications (i.e., …

Comparing Efficiencies Of Population Control Methods For Responding To Introductions Of Transboundary Animal Diseases In Wild Pigs, Nathan P. Snow, Benjamin Smith, Michael J. Lavelle, Michael P. Glow, Kayleigh Chalkowski, Bruce R. Leland, Sarah Sherburne, Justin W. Fischer, Keely J. Kohen, Seth M. Cook, Hatton Smith, Kurt C. Vercauteren, Ryan S. Miller, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Introductions of transboundary animal diseases (TADs) into free-ranging wildlife can be difficult to control and devastating for domestic livestock trade. Combating a new TAD introduction in wildlife with an emergency response requires quickly limiting spread of the disease by intensely removing wild animals within a contiguous area. In the case of African swine fever virus (ASFv) in wild pigs (Sus scrofa), which has been spreading in many regions of the world, there is little information on the time- and cost-efficiency of methods for intensively and consistently culling wild pigs and recovering carcasses in an emergency response scenario. We compared the …

Temporal And Spatial Influences On Fawn Summer Survival In Pronghorn Populations: Management Implications From Noninvasive Monitoring, Cole A. Bleke, Eric M. Gese, Juan J. Villalba, Shane B. Roberts, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Monitoring vital rates allowsmanagers to estimate trends in growth rates of ungulate populations. However, connecting the influence of nutrition on ungulate demography is challenging. Noninvasive sampling offers a low-cost, low-effort alternative for measuring nutritional indices, allowing for an increased understanding of the mechanistic relationships between environmental factors, nutrition, and specific population vital rates. We examined the temporal influence of intrinsic and extrinsic factors on pronghorn (Antilocapra americana) fawn recruitment. We collected fresh fecal samples from adult female pronghorn in five subpopulations spanning three sampling periods associated with critical maternal life-history stages (late gestation, early lactation, breeding season) for …

Susceptibilities And Viral Shedding Of Peridomestic Wildlife Infected With Clade 2.3.4.4b Highly Pathogenic Avian Influenza Virus (H5n1), J. Jeffrey Root, Stephanie M. Porter, Julianna B. Lenoch, Jeremy W. Ellis, Angela M. Bosco-Lauth

United States Department of Agriculture Wildlife Services: Staff Publications

We tested the ability of six peridomestic wildlife species to replicate a highly pathogenic (HP) clade 2.3.4.4b AIV (H5N1) isolated in the United States during 2022. All tested species replicated and shed virus, at least to some degree. Of the six species evaluated (house sparrows (Passer domesticus), European starlings (Sturnus vulgaris), feral pigeons (Columba livia), striped skunks (Mephitis mephitis), Virginia opossums (Didelphis virginiana), and cottontails (Sylvilagus sp.)), striped skunks and Virginia opossums shed the highest viral titers of 106.3 PFU/mL and 105.0 PFU/mL, respectively. Overall, the results of this …

Chronic Wasting Disease Effects On A Breeding Season Behavior In White-Tailed Deer (Odocoileus Virginianus), Miranda Hsiang-Ning Jacobson Huang, Stephen Demarais, Bronson K. Strickland, Allan Houston, Alejandro Banda, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Wildlife disease outbreaks can lead to population declines, which are usually attributed to increased direct or indirect mortality. Alternatively, behavior associated with sickness can lead to social isolation, potentially decreasing fitness of affected individuals. A useful case study to examine this dynamic is chronic wasting disease (CWD), a neurological disease of cervids, known to affect behavior and movement. In this study, we monitored scraping, a White-tailed Deer (Odocoileus virginianus; WTD) breeding season behavior, in an area of high CWD prevalence to determine if this reproductive behavior is affected by CWD. At 107 scrape sites, we detected 3,063 scrape interactions and …

Trichinella Murrelli Identified In Red Foxes (Vulpes Vulpes) In Pennsylvania, Usa, Jitender Dubey, Peter C. Thompson, Larissa S. De Araujo, Aditya Gupta, Sasha Kay, Oliver C. H. Kwok, Jaquin Battle, Kyle R. Van Why, Justin D. Brown, Benjamin Rosenthal

United States Department of Agriculture Wildlife Services: Staff Publications

Trichinella infections have been eliminated from pork where pigs are raised in biosecure facilities, but wildlife infections persist. Trichinella murrelli is the primary zoonotic species in wild carnivores in the United States, having been identified in several species of omnivores and carnivores. Here, we document its occurrence in seven of 21 (33.3%) red foxes (Vulpes vulpes) from six counties in Pennsylvania. Encysted Trichinella juveniles were detected in muscle squashes (< 5 g samples) of all seven foxes, and in histological sections of the tongue and limb muscle of three. Juveniles from muscle squashes were pooled and tested in a multiplex PCR capable of differentiating all Trichinella species native to the USA; all samples contained only T. murrelli. This is the first identification of T. murrelli in red foxes from Pennsylvania, …

Heating Decoys To Mimic Thermal Signatures Of Live Animals For Drones, Landon R. Jones, Cerise Mensah, Jared S. Elmore, Kristine O. Evans, Morgan B. Pfeiffer, Brad F. Blackwell, Raymond B. Iglay

United States Department of Agriculture Wildlife Services: Staff Publications

Method name

Heating animal decoys to mimic thermal signatures for drones

Abstract

Thermal sensors mounted on drones (unoccupied aircraft systems) are popular and effective tools for monitoring cryptic animal species, although few studies have quantified sampling error of ani- mal counts from thermal images. Using decoys is one effective strategy to quantify bias and count accuracy; however, plastic decoys do not mimic thermal signatures of representative species. Our objective was to produce heat signatures in animal decoys to realistically match thermal images of live animals obtained from a drone-based sensor. We tested commercially available methods to heat plastic decoys of …

Competitive Behaviors Between Black Vultures (Coragyps Atratus) And Turkey Vultures (Cathartes Aura) During Scavenging / Comportamientos Competitivos Entre Coragyps Atratus Y Cathartes Aura Durante El Carroñeo, Amanda M. Herbert, Patrick A. Zollner, Landon R. Jones, Marian L. Wahl, Grant N. Burcham, Bryan M. Kluever, Lee A. Humberg, Brandon M. Quinby

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract

Interference competition occurs when an individual prohibits another’s access to a resource through antagonistic interactions. Despite considerable research on scavenger interactions at carrion, the limited evidence for competitive interactions between black vultures (Coragyps atratus) and turkey vultures (Cathartes aura) relies upon the frequency of antagonistic interactions without considering other forms of competition. Using remote cameras, we recorded the duration of aggression, scavenging, and vigilance behaviors exhibited by individual black vultures and turkey vultures scavenging stillborn domestic cattle carcasses within flocks composed of one or both vulture species. We tested for differences of durations of each …

The Texas Feral Swine Eradication And Control Pilot Program, David R. Pipkin, Bruce R. Leland, Katherine Garwood, Linda Tschirhart-Hejl, Michael J. Bodenchuk, John M. Tomecek

United States Department of Agriculture Wildlife Services: Staff Publications

The United States Agriculture Improvement Act of 2018 (the 2018 Farm Bill) established the Feral Swine Eradication and Control Pilot Program. The program funded US$75M for 5 years, split evenly between the Natural Resources Conservation Service (NRCS) and the Animal and Plant Health Inspection Service (APHIS), both programs within the United States Department of Agriculture. The agencies solicited joint programs from states with high densities of feral swine in two phases. In Texas, NRCS and APHIS submitted three multi-county project areas along watersheds for Phase I funding and one eradication effort along with two crop protection projects in Phase II. …

Spatiotemporal Partitioning Of Two Invasive Ungulates In Guam [Abstract], Kelly J. Koriakin, Kurt C. Vercauteren, Nathan P. Snow, D. Buck Jolley

United States Department of Agriculture Wildlife Services: Staff Publications

Interspecific interactions are crucial in shaping ecosystem dynamics (Connell 1983, Tilman 1987, Barbosa and Castellanos 2005). Non-native ungulates have been introduced across the globe (Ferretti and Lovari 2014, Volery et al. 2021) and in environments where multiple invasives thrive, these co-occurring sympatric species may shift spatiotemporal patterns to minimize interspecific competition (Schoener 1974, Chesson 2000). Spatiotemporal shifts can lead to cascading effects to the native flora and fauna (Simberloff and Von Holle 1999). Given the potential negative impacts, understanding these interactions is vital for effective management of these ecosystems.

Two invasive ungulates, the wild pig (Sus scrofa) and …

The Influence Of Social And Spatial Processes On The Epidemiology Of Environmentally Transmitted Pathogens In Wildlife: Implications For Management, Aakash Pandey, Chris Wojan, Abigail Feuka, Meggan E. Craft, Kezia Manlove, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Social and spatial structures of host populations play important roles in pathogen transmission. For environmentally transmitted pathogens, the host space use interacts with both the host social structure and the pathogen’s environmental persistence (which determines the timelag across which two hosts can transmit). Together, these factors shape the epidemiological dynamics of environmentally transmitted pathogens. While the importance of both social and spatial structures and environmental pathogen persistence has long been recognized in epidemiology, they are often considered separately. A better understanding of how these factors interact to determine disease dynamics is required for developing robust surveillance and management strategies. Here, …

Surveillance Of Highly Pathogenic Avian Influenza Virus In Wild Canids From Pennsylvania, Usa, Kevin D. Niedringhaus, Taylor C. Chan, Ashley Mcdowell, Lauren Mxwell, Madison Stevens, Lane Potts, Erica Miller, Eman Anis, Kyle Van Why, Thomas Keller, David Stallknecht, Rebecca L. Poulson, Kaitlyn Bahrs, Justin D. Brown

United States Department of Agriculture Wildlife Services: Staff Publications

The avian influenza virus is a global pathogen with significant health and economic implications. While primarily a pathogen of wild and domestic birds, recent outbreaks of the H5N1 highly pathogenic avian influenza virus (HPAIV) clade 2.3.4.4b have caused mortality in a wide variety of mammals, including members of the Canidae family, on multiple continents. Despite sporadic mortality events globally, the epidemiology and pathobiology of H5N1 HPAIV in wild canids remains poorly defined. During 2022–2024, 41 wild canid carcasses (diagnostic cases), including 23 red foxes and 18 gray foxes, were tested for the influenza A virus (IAV) via PCR, with five …

Rabies, Amy T. Gilbert, Christine Ellis

United States Department of Agriculture Wildlife Services: Staff Publications

Illustrated fact sheet on rabies.

An Assessment Of Functional Characteristics In Macroinvertebrates And Fishes In The Lower Ogeechee River, Molly A. Mckeon

College of Graduate Studies: Theses & Dissertations

The southeastern United States is a hotspot for aquatic biodiversity; yet this region is also considered vulnerable to climate and land–use changes. The Ogeechee River is an unimpeded blackwater river in Georgia that drains into the Atlantic Ocean and a unique ecosystem due to the preservation of its natural state; Historically, research conducted in the river establishes a baseline for long-term ecological studies. The aim of this study is to compare aquatic macroinvertebrate and fish community composition data collected in 2014 to 2017 to a recently collected dataset from 2023 and document temporal changes. Water quality monitoring was performed throughout …

Exploring The Consistency Of Flow Regimes Within And Among Ecoregions Of The Southeastern United States, Frank Paul Braun Iv

College of Graduate Studies: Theses & Dissertations

Human manipulation of river systems has long been a known contributor to the loss of freshwater biodiversity. By accounting for environmental causes of hydrologic variation among rivers, we can better understand how ecoregion mediates flow regimes and forecast species that may be at risk. Presumably, natural variation associated with ecoregion boundaries exerts strong influence on flow regimes, and may mediate relationships between other features (e.g., land use, dam operations) and hydrology. However, such between-ecoregion variation is poorly investigated, particularly at fine spatial and temporal scales. I characterized 10 hydrologic metrics, representing the five key dimensions of the flow regime (magnitude, …

Demographics And Recruitment Patterns In A Reintroduced Population Of Alligator Snapping Turtles (Macrochelys Temminckii), Melisa P. Blasky

Graduate Theses/Dissertations

Reintroductions have increasingly become a useful tool for managing wildlife populations, but post-reintroduction studies to evaluate the success of these efforts are often lacking. In 2007, 265 Alligator Snapping Turtles (Macrochelys temminckii) were released into several semi-impounded wetlands in the Washita River drainage basin in southeastern Oklahoma, where surveys in the late 1990s suggested that the species was functionally extirpated. I conducted turtle trapping surveys using baited hoop nets to assess demographics and recruitment patterns in the population 11–12 years after the initial reintroduction. I estimated the age of juveniles by counting scute annuli and compared the data …

Monarch Butterfly (Danaus Plexippus) Oviposition Preferences And A Survey Of Fungal Pathogens On Native Milkweeds (Asclepias) Of The Northern Great Plains, Grace Damiano

Electronic Theses and Dissertations

North American monarch butterfly (Danaus plexippus) populations are experiencing significant declines due to habitat loss caused by land use changes. Much of the American Midwest where milkweed, the only host plant of the monarch butterfly, was once much more abundant has been converted to a predominantly agricultural landscape. There are nineteen species of milkweed native to the northern Great Plains region occupied by South Dakota, North Dakota, and Minnesota. Some of these milkweed species may be preferable to monarch butterflies for different reasons, including morphological factors such as stem length, species-level chemical factors, and temporal factors. As monarch …

The Effects Of Beaver Dam Anaolgs On Linked Aquatic-Terrestrial Communities In Western Headwater Streams, Michelle Elyse Fillion, Benjamin P. Colman, Rachel L. Malison

Graduate Student Theses, Dissertations, & Professional Papers

In response to stream degradation resulting from the near eradication of American Beavers (Castor canadensis), managers of freshwater systems have turned to using beaver dam analogs (BDAs) as one means of restoring waterways from stream and riparian degradation. Though BDAs have been shown to restore physical traits of riparian areas, their influence on macroinvertebrates and linked aquatic-terrestrial systems is not well understood. To examine how BDAs influence aquatic habitats, macroinvertebrate communities, and riparian insectivores, we compared unrestored reference stream segments to BDA-restored segments with 7-14 BDAs in three western Montana headwater streams. We collected physical stream measurements and quantitative samples …

Informing Standardized Wood Turtle (Glyptemys Insculpta) Population Monitoring: Influences Of Sampling Approach And Turtle Behavior On Model Estimation, Allyson N. Beard

Graduate Theses, Dissertations, and Problem Reports (ETD)

To better understand wood turtle (Glyptemys insculpta) population trends, two standardized population survey protocols were recently developed for use by state monitoring programs. The protocols were independently developed, tested, and deployed for population monitoring in the eastern and upper midwestern United States. It was unknown if the sampling designs result in similar detection success or if data from the two protocols are compatible for broad-scale analyses. Additionally, neither monitoring protocol includes a sampling design that allows for the separation of detection (p) into availability (p_a), and detection given availability (p_d). …

Not Just Bony Fish: All Nonmammalian And Nonavian Animals Are Neglected In Both Welfare And General Research, Jennifer A. Mather Ph.D.

Animal Sentience

The lack of research on fish welfare highlighted by Oldfield & Bonano (2024) is only part of a more general problem: a relative neglect of animals other than mammals and birds. The causes are our lack of knowledge, our negative view of what we consider to be “lower” animals and our underestimation of their intelligence and sensitivity. Our estimation will increase as our knowledge increases. As a broader view spreads to the public through the media, it should gradually increase the demand to expand both research and welfare, especially beyond mammals and birds.

Are Elaeagnus Umbellata Invasions Limited By Microbial Interactions?, Cody Anderson Leverette

Masters Theses

Mutualistic interactions with soil microbes are a key component of plant invasions. Mutualists such as ectomycorrhizal fungi and Rhizobia bacteria often limit invasive plant establishment and performance, but the role of nitrogen-fixing Frankia bacteria in invasions remains largely unexplored. In this study, I quantified the net effects of positive and negative plant-soil feedbacks, including Frankia nodulation, on invasive Elaeagnus umbellata (autumn olive; hereafter AO) seedling performance and traits at varying distances from focal shrubs using live soil and sterilized soil. The expectation was that seedling performance would decrease with further distance from shrubs as Frankia abundance decreased. Contrary to expectations, …

Benthic And Epibenthic Invertebrate Assemblages Associated With Estuarine Submerged Aquatic Vegetation Differ Between Native And Invasive Plants, Marissa Hall, Kathryn O'Shaughnessy, Bethany Kiley, Ashley Mcdonald, Taber Faurie, Zoey Hendrickson, Anna Reimer, Samantha Smith, Charles Martin

Gulf and Caribbean Research

Estuarine submerged aquatic vegetation (SAV) provides vital habitat for macroinvertebrate communities that support diverse food webs and subsequent ecosystem services. Invasive SAV, however, has the potential to alter estuarine food webs through competition with native SAV, resulting in different associated biological communities. In the Mobile-Tensaw Delta (Alabama, USA), the invasive Eurasian milfoil, Myriophyllum spicatum, is fast becoming the dominant SAV, out-competing native SAV such as wild celery, Vallisneria americana. This study investigated the above- and belowground macroinvertebrate assemblages associated with these SAV habitats. We found significantly different assemblages between the SAV, with V. americana supporting more even and …

Moose Abundance And Calf:Cow Ratios On The Blackfeet Indian Reservation And Glacier National Park, Landon Joel Magee

Graduate Student Theses, Dissertations, & Professional Papers

Many moose (Alces alces; Sikihtsisoo) populations across North America, especially along their southern range, are declining due to factors such as climate change, parasites and disease, predation, habitat loss and degradation, and overharvest. These declines highlight broader ecological concerns, as moose play a critical role as prey within their ecosystems. Despite their importance, data on crucial demographic parameters like abundance and age ratios are sparse for moose, complicating management efforts. Conventional monitoring methods, including radio-collaring, harvest data, public surveys, and aerial surveys, face significant logistical and financial challenges, and often fail to provide a comprehensive understanding of …

Methods For Optimizing Detection And Evaluating Habitat Use Of North American River Otters In South Dakota, Jessica Speiser

Electronic Theses and Dissertations

North American river otters (Lontra canadensis) play a critical role as an apex predator in riverine ecosystems. A challenging species to survey using traditional methods, they remain understudied in non-forested regions, such as the Northern Great Plains, where habitat degradation and landscape fragmentation may reduce habitat quality and availability and disrupt landscape connectivity. This thesis aims to improve detectability and investigates the habitat use of river otters in South Dakota to better understand habitat needs of otters and improve their continued recovery and management. My first chapter provides a brief overview of river otters and their ecological roles in freshwater …

Improving Stream Connectivity In South Dakota, Colton Rainier Curtis

Electronic Theses and Dissertations

Stream connectivity is crucial for fish movement and genetic diversity in fragmented landscapes. Road-crossings often act as barriers, disrupting hydrology and isolating fish populations. The Southeast Aquatic Resources Partnership (SARP) has developed rapid road-crossing assessment protocols and tools to prioritize restoration projects. However, managers lack tools for planning, directing, and initiating roadcrossing assessments. Managers also require modeling approaches to effectively identify and monitor road-crossings across dynamic stream networks. Presented here is a case study offering a roadmap for effective implementation of collaborative road-crossing assessments and prioritization of remediation projects, alongside an exploration of predictive modeling approaches to identify problematic crossings …

Integrating Western Science And Indigenous Knowledge For Just Practices In Conservation, Cierra Lea Keith

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Interactions Between New Zealand Mud Snails (Potamopyrgus Antipodarum) And Toxic Cyanoabacteria (Anabaena) In Baduwa’T (Mad River), Humboldt County, California, Cecilia F. Kennelly

Cal Poly Humboldt theses and projects

Invasive species in freshwater systems are circulated around the globe, wreaking havoc on natural communities. The New Zealand mud snail (Potamopyrgus antipodarum) is a very successful aquatic invader that has established populations in freshwater streams, lakes, and rivers around the globe. The goal of this project was to evaluate the interactions of invasive New Zealand mud snails (NZMS) and toxic cyanobacteria Anabaena in the Mad River in Humboldt County, California. These two species of concern are found in similar habitats along the river, but their whether NZMS consume Anabaena or affect toxin production is unknown. First, I conducted …

Leaf To Canopy Functional Resilience: Plant Physiological And Carbon Cycling Stability Following Disturbances, Lisa T. Haber

Theses and Dissertations

Ecological disturbances impact core ecosystem functions, including production and biogeochemical cycling, by precipitating changes in biodiversity, physical environmental variables, vegetation structure, and functional trait distributions. As disturbance patterns intensify and abruptly transition to novel regimes under global change, future trajectories of ecosystem functions, including carbon (C) uptake and storage, are uncertain. A more complete understanding of the mechanisms underpinning ecosystem stability (or ability to return to baseline functioning) following disturbance is needed to forecast future C cycling.

Replicated ecosystem-scale disturbance experiments, particularly when coupled with modeling, are required to rigorously test hypothesized trajectories of ecosystem structural and functional change following …