Terrestrial and Aquatic Ecology Commons^™

Interactions Between Sediment Mechanical Structure And Infaunal Community Structure Following Physical Disturbance, William Cyrus Roger Clemo

Theses and Dissertations

Shallow, river-influenced coastal sediments are important for global carbon storage and nutrient cycling and provide a habitat for diverse communities of invertebrates (infauna). Elevated bed shear stress from extreme storms can resuspend, transport, and deposit sediments, disrupting the cohesive structure of muds, and sorting and depositing sand eroded from beaches. These physical disruptions can also resuspend or smother infauna, decreasing abundances and changing community structure. Infaunal activities such as burrowing, tube construction, and feeding can impact sediment structure and stability. However, little is known about how physical disturbance impacts short and long-term sediment habitat suitability and whether disturbance-tolerant infauna influence …

Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman

USDA Wildlife Services: Staff Publications

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …

Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America, Ahmed Kandeil, Christopher Patton, Jeremy C. Jones, Trushar Jeevan, Walter N. Harrington, Sanja Trifkovic, Jon P. Seiler, Thomas Fabrizio, Karlie Woodard, Jasmine C. Turner, Jeri Carol Crumpton, Lance Miller, Adam Rubrum, Jennifer Debeauchamp, Charles J. Russell, Elena A. Govorkova, Peter Vogel, Mia Kim-Torchetti, Yohannes Berhane, David Stallknecht, Rebecca Poulson, Lisa Kercher, Richard J. Webby

USDA Wildlife Services: Staff Publications

Highly pathogenic avian influenza A(H5N1) viruses of clade 2.3.4.4b underwent an explosive geographic expansion in 2021 among wild birds and domestic poultry across Asia, Europe, and Africa. By the end of 2021, 2.3.4.4b viruses were detected in North America, signifying further intercontinental spread. Here we show that the western movement of clade 2.3.4.4b was quickly followed by reassortment with viruses circulating in wild birds in North America, resulting in the acquisition of different combinations of ribonucleoprotein genes. These reassortant A(H5N1) viruses are genotypically and phenotypically diverse, with many causing severe disease with dramatic neurologic involvement in mammals. The proclivity of …

Quantifying The Role Of Water Quality On Nitrogen Cycling In A Trophic Estuary, Kayla Gonzalez-Boy

Symposium of Student Scholars

Jobos Bay Estuary is an intertidal, tropical estuary located in southern Puerto Rico. The estuary covers about 12 km² and has a variety of habitats, such as seagrass beds, mangroves, mud flats, and coral reefs, which play important roles in sediment trapping and water quality maintenance. Seagrasses also serve as nursery and feeding grounds and provide shelter for macrofauna. Currently, the role of seagrasses and water quality on nitrogen (N) cycling in trophic estuaries is not well constrained. Understanding variations in sediment-based effects on N cycling rates and transformations, and how they are associated with water quality, is an …

The Kankakee River General Physical And Historical Characteristics, J.R. Black

J.R. Black Kankakee River Materials

6.5 page description of the history and geography of the Kankakee River from glacial era to 1980. River health and commercial activities are described.

Includes reference list.

Document is undated.

Comments On Budget Cuts & There Effect On The Idnr, J.R. Black

J.R. Black Kankakee River Materials

This is a call to restore the professionalism of the staff and funding for the Illinois Department of Natural Resources, in the era of reduced funding for the C-2000 program and reduced services to citizens (hunting, damping, gun safety, etc.)

Undated document.

Presentation Kankakee Area Sportsman's Clubs, J.R. Black

J.R. Black Kankakee River Materials

"WHERE WE WERE AND WHERE WE ARE NOW IN RELATION TO RESTORATION OF THE KANKAKEE RIVER" Chronology of ownership and development on Kankakee River. List of water surveys and other studies. List of conservation organizations.

No date provided, but appears to be during C2000 grant period.

Meeting Introduction, J.R. Black

J.R. Black Kankakee River Materials

Undated speaker's notes. Describes organization's founding in 1994, stakeholders, aims, and partnerships with federal and regional restortation projects.

"PRIMARY CONCERN IS THE SAND AND SEDIMENT LOADS IN THE KANKAKEE RIVER. A GREAT DEAL OF THIS PROBLEM STEMS FROM THE DRAINING OF THE GRAND MARSH BETWEEN THE YEARS OF 1850 AND 1917. [when]...RIVER IN INDIANA WAS CHANGED FROM A 250 MILE MEANDERING STREAM TO A 90 MILE CHANNELIZED DITCH."

General Information For ___ - Speech, J.R. Black

J.R. Black Kankakee River Materials

No date included in document.

Description of Kankakee River's natural path, channelization, Potowatomie (sic) name, trivia, summary of two scientific studies regarding sediment and sandbed load, NIAA activities, J.R. Blacks' role on Land Use and Water Resource Task Force, funding, and recognition by other agencies.

Answers To The Ecosystem Partnership Brochure Questionnaire, J.R. Black

J.R. Black Kankakee River Materials

Typed answers to six questions regarding the Kankakee River Basin Partnership and the Alliance to Restore Kankakee.

Kankakee River Basin And Partnership [Speaker's Notes], J.R. Black

J.R. Black Kankakee River Materials

Possible creation date of 1998.

Speaker's notes that appear to have been typed to accompany 23 slides.Overview of the natural resources and the Partnership's work to "restore, protect and enhance the Kankakee River Basin" (see slide 11 note on page 2 of the document).

Modeling The Long-Distance Effects Of Predation, Henry Ogu

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Book Review: Habitantes De La Obscuridad (Fauna Ibero-Balear De Las Cuevas) – Inhabitants Of The Darkness (Ibero-Baleric Fauna Of Caves), Oana Teodora Moldovan

International Journal of Speleology

NA

Rangewide Migratory Connectivity And Migration Ecology In Swainson's Warblers (Limnothlypis Swainsonii) Derived From Multisensor Geolocators, Garrett Rhyne

LSU Master's Theses

Successful conservation of Neotropical migratory passerines requires a detailed understanding of their annual cycle ecology, including wintering and breeding distributions, migratory pathways and stopovers, and migratory phenology. It is also important to evaluate the extent of geographic isolation between separate breeding populations during the nonbreeding season, known as migratory connectivity. Swainson’s Warbler (Limnothlypis swainsonii) is a species of conservation concern that, due to their secretive nature and selection of dense forest habitats, is poorly studied and lacks migratory information. Our objective was to track Swainson’s Warblers across their breeding populations (Mississippi Valley, Coastal Plains, and Appalachian) to detail …

Short-Term Versus Long-Term Effects Of Nitrogen Addition And Warming On Ecosystem N Dynamics In A Grass-Dominated Temperate Old Field, Benjamin F. A. Souriol

Electronic Thesis and Dissertation Repository

Increased atmospheric nitrogen (N) deposition and climate warming are both anticipated to influence the ecosystem N dynamics of northern temperate ecosystems substantially over the next century. Nevertheless, in field experiments with N addition and warming treatments, temporal scale can play an important role in determining the extent of treatment effects on N dynamics, and it is unclear to what extent the results of short-term studies can be extrapolated to responses over longer time scales. I compared the short-term versus long-term effects of N addition and warming on net N mineralization, N leaching, and N retention in a grass-dominated old field. …

H5n1 Highly Pathogenic Avian Influenza Clade 2.3.4.4b In Wild And Domestic Birds: Introductions Into The United States And Reassortments, December 2021–April 2022, Sungsu Youk, Mia Kim Torchetti, Kristina Lantz, Julianna B. Lenoch, Mary Lea Killian, Christina Leyson, Sarah N. Bevins, Krista Dilione, Hon S. Ip, David E. Stallknecht, Rebecca L. Poulson, David L. Suarez, David E. Swayne, Mary J. Pantin-Jackwood

USDA Wildlife Services: Staff Publications

Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 virus introductions in the U.S. by wild birds. Unreassorted Eurasian genotypes A1 and A2 entered the Northeast Atlantic states, whereas a genetically distinct A3 genotype was detected in Alaska. The A1 genotype spread westward via wild bird migration and reassorted with North American …

Alpha Diversity And Species Status Of Uneven Forests In Eco-Zones Of Taraba State, Nigeria, Dau Henry Japheth, Joseph A. Ugbe, Jerry I. Alfa

Journal of Bioresource Management

Alpha diversity indices quantify the uncertainty in predicting the species identity of an individual. Quantitative indices on species composition and distribution are vital to understanding the trend and species status of an ecosystem for conservation management. However, among the forest ecosystems in Taraba state, Bakin Dutse and Wasaji uneven forests are one of the least studied areas, especially in terms of tree species status. This research work aims at assessing alpha diversity and species status of selected uneven forests in Taraba state, Nigeria; to provide baseline knowledge for conservation management. In total, 102 tree species from 74 genera and 41 …

Water Quality Of Madari Khal Tributary Of The Halda River, Chattogram, Bangladesh, Md. Shafiqul Islam, M.A. Azadi

Journal of Bioresource Management

Tidal canal Madari-Khal is one of the important tributaries of the river Halda, through which nearby hill stream water, agricultural washings, and effluents (treated or untreated) of Chattogram Asian paper Mill are drained to the Halda River. In this paper water quality and pollution level of Madari Khal are presented. A one-year study was conducted to ascertain the water quality and pollution level by using different physicochemical parameters i.e. Air temperature, Water temperature, Transparency, EC (Electrical Conductivity), TDS (Total Dissolved Solids), pH, DO (Dissolved Oxygen), freeCO₂, Ca⁺⁺ (Calcium), TH (Total Hardness), TA (Total Alkalinity), and Biological Oxygen …

The Detectability Of Atlantic Salmon (Salmo Salar) Microsatellite And Mitochondrial Environmental Dna, Simone N. Miklosi

Electronic Thesis and Dissertation Repository

Little is known about what information can be gathered from microsatellite eDNA. It is important to gain a deeper understanding of the detectability and analysis of microsatellite eDNA because it could provide information about population size that mitochondrial eDNA cannot. Water samples were collected from tank and river experiments, and rivers known to contain Atlantic salmon (Salmo salar) and analyzed for Atlantic salmon mitochondrial and microsatellite eDNA. Mitochondrial eDNA was detected from all the tank experiments and 10 out of 15 rivers known to contain Atlantic salmon. Microsatellite eDNA was detected from all the tank experiments and none …

Antiviral Susceptibility Of Clade 2.3.4.4b Highly Pathogenic Avian Influenza A(H5n1) Viruses Isolated From Birds And Mammals In The United States, 2022, Ha T. Nguyen, Anton Chesnokov, Juan De La Cruz, Philippe Noriel Q. Pascua, Vasiliy P. Mishin, Yunho Jang, Joyce Jones, Han Di, Andrei A. Ivashchenko, Mary Lea Killian, Mia K. Torchetti, Kristina Lantz, David E. Wentworth, Charles T. Davis, Alexandre V. Ivachtchenko, Larisa V. Gubareva

USDA Wildlife Services: Staff Publications

Clade 2.3.4.4b highly pathogenic avian influenza (HPAI) A(H5N1) viruses that are responsible for devastating outbreaks in birds and mammals pose a potential threat to public health. Here, we evaluated their susceptibility to influenza antivirals. Of 1,015 sequences of HPAI A(H5N1) viruses collected in the United States during 2022, eight viruses (∼0.8%) had a molecular marker of drug resistance to an FDA-approved antiviral: three adamantane-resistant (M2-V27A), four oseltamivir-resistant (NA-H275Y), and one baloxavir-resistant (PA-I38T). Additionally, 31 viruses contained mutations that may reduce susceptibility to inhibitors of neuraminidase (NA) (n = 20) or cap-dependent endonuclease (CEN) (n = 11). A panel of 22 …