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Terrestrial and Aquatic Ecology Commons™
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Articles 1 - 30 of 67
Full-Text Articles in Terrestrial and Aquatic Ecology
One Assay To Rule Them All: Development Of A Global Environmental Dna Tool To Support Range-Wide Surveys Of An Imperiled Sawfish And Its Application In The Eastern Tropical Pacific, Juan C. Cubillos-M, Annmarie Fearing, Demian D. Chapman, Peter M. Kyne, P. Joana Dias, Cindy Gonzalez, Ryan N. Lehman, Yaliana Chichaco, Bryan L. Huerta-Beltrán, Kayla L. Mcculloch, Sarah M. Toepfer, John K. Carlson, Nicole M. Phillips
One Assay To Rule Them All: Development Of A Global Environmental Dna Tool To Support Range-Wide Surveys Of An Imperiled Sawfish And Its Application In The Eastern Tropical Pacific, Juan C. Cubillos-M, Annmarie Fearing, Demian D. Chapman, Peter M. Kyne, P. Joana Dias, Cindy Gonzalez, Ryan N. Lehman, Yaliana Chichaco, Bryan L. Huerta-Beltrán, Kayla L. Mcculloch, Sarah M. Toepfer, John K. Carlson, Nicole M. Phillips
Faculty Publications
Environmental DNA (eDNA) has emerged as a powerful tool to support the conservation of threatened species. The sawfishes are one of the most imperiled vertebrate groups, with all five species classified as Critically Endangered on the IUCN Red List of Threatened Species. Owing to their toothy rostra, sawfishes are easily entangled in a wide range of fishing gear, with mortalities in fisheries and loss of habitat driving global declines. The Largetooth Sawfish, Pristis pristis, historically had a circumtropical range, but has experienced severe declines in geographic range and abundance. Viable populations are thought to be confined to northern Australia, but …
Variable Hybridization Rates Between F2 Fundulus Notatus Females, Jordan Tanaka
Variable Hybridization Rates Between F2 Fundulus Notatus Females, Jordan Tanaka
Honors Theses
Hybridization between two related species has been widely observed and offers a lens into complex evolutionary processes. Endogenous and exogenous factors affect hybrid fitness and diversification, and pre-zygotic and post-zygotic barriers affect species’ ability to hybridize. Female mate choice is a pre-zygotic isolation mechanism which is known to be more significant than male mate choice in many species, a trend which is linked to females often investing more energy into offspring. Detailing the ways in which these mechanisms operate is integral to understanding hybridization on a larger scale. The species examined here, Fundulus notatus and Fundulus olivaceous, are closely …
Oyster Drill (Stramonita Haemastoma Complex) Habitat Preferences In A Shallow Coastal Estuary, Coen Mcgarrah, Cynthia Lupton, Eric Sparks, Jennifer L. Debose
Oyster Drill (Stramonita Haemastoma Complex) Habitat Preferences In A Shallow Coastal Estuary, Coen Mcgarrah, Cynthia Lupton, Eric Sparks, Jennifer L. Debose
Gulf and Caribbean Research
Southern oyster drill snails (Stramonita haemastoma complex) are nuisance organisms within the Gulf of Mexico. This is due to their damaging impact on recovering and farmed oyster (Crassostrea virginica) populations, which are one of the drills’ main food sources. Oyster reef recovery and increased aquaculture production are priorities for Mississippi and the wider northern Gulf coast. The Grand Bay National Estuarine Research Reserve (NERR) hosts multiple oyster reef restoration sites within its boundaries, yet no comprehensive survey of oyster drill abundance has been conducted in this area to date. Additionally, knowledge of oyster drill preferences for sediment …
Manatee Dock Sign Distribution And Its Influence On Publicly-Sourced Sighting Reports In Alabama, Daniela Payán Arias, Sophia C. Corde, Ruth H. Carmichael
Manatee Dock Sign Distribution And Its Influence On Publicly-Sourced Sighting Reports In Alabama, Daniela Payán Arias, Sophia C. Corde, Ruth H. Carmichael
Gulf and Caribbean Research
No abstract provided.
Evaluating Donor Site Recovery Following Halodule Wrightii Harvest For Restoration In Northwest Florida, Katie M. Konchar, Becca A. Hatchell, Colin P. Shea, Bradley T. Furman, Kent Smith
Evaluating Donor Site Recovery Following Halodule Wrightii Harvest For Restoration In Northwest Florida, Katie M. Konchar, Becca A. Hatchell, Colin P. Shea, Bradley T. Furman, Kent Smith
Gulf and Caribbean Research
Bare‑root harvesting of Halodule wrightii is widely used to supply donor material for seagrass restoration, yet the capacity of donor meadows to recover in near‑temperate systems remains poorly documented. We evaluated donor‑site recovery following bare‑root harvesting in St. Andrew Bay, northwest Florida—an estuary at the northern extent of Tropical Atlantic Bioregion 2 where H. wrightii exhibits strong seasonal senescence and a shortened growing season. Thirty harvest impact sites were monitored for 388 days to quantify changes in shoot density, percent frequency, and sediment elevation relative to nearby reference conditions. Shoot density and percent frequency at harvested sites converged with reference …
Exploring Fisheries Species Distribution Shifts In Response To Freshwater Inflow Through The Bonnet Carré Spillway Using Species Distribution Models, David T. May
Master's Theses
The Bonnet Carre Spillway (BCS) is a flood control structure on the Mississippi River (MR) ~52 km upstream of New Orleans. The BCS protects downstream communities from MR flooding by diverting floodwaters into Lake Pontchartrain when the MR exceeds 5.18m flood stage. Diverted waters flow east into the Mississippi Sound (MSS), introducing turbid, nutrient rich freshwater to the estuary before draining into the Gulf of Mexico. BCS openings have become much more frequent in the last decade, though little work has been done to explore the impact of the BCS on nektonic fisheries species. Here, a series of seasonal Maximum …
Population Estimates, Demography, And Habitat Assessment Of The Pearl River Map Turtle (Graptemys Pearlensis) In The Pearl River Drainage Of Mississippi, Noah Devros
Master's Theses
The Pearl River map turtle (Graptemys pearlensis) is a highly riverine Emydid endemic to the Pearl River drainage of central and southern Mississippi and southern Louisiana. First described in 2010, G. pearlensis was listed as federally Threatened in 2024. . Due to its relative novelty as a species, no rigorous site-specific population estimates of G. pearlensis in Mississippi have been conducted. The primary goal of this study was to implement a replicable method of assessing the population of G. pearlensis throughout the Pearl River drainage system of Mississippi. A secondary goal was to describe habitat associated with G. …
Sibship Analysis Of Fall And Spring Spawn Gulf Sturgeon Eggs In The Choctawhatchee River, Florida, Lyric Mccullouch
Sibship Analysis Of Fall And Spring Spawn Gulf Sturgeon Eggs In The Choctawhatchee River, Florida, Lyric Mccullouch
Honors Theses
The Gulf sturgeon (Acipenser oxyrinchus desotoi) is an anadromous species that inhabits rivers along the northern Gulf of Mexico. Facing challenges from overfishing and habitat alteration, the Gulf sturgeon is listed as threatened under the Endangered Species Act. This study investigated the genetic distinctiveness of fall and spring spawning groups of Gulf sturgeon in the Choctawhatchee River, a critical habitat for the species. In this study, I used microsatellite loci to analyze Gulf sturgeon eggs previously collected in the fall and spring of 2019 and 2020. The goals of this study were to verify the genetic identity of …
Presence Of Potential Nursery Habitat For The Lemon Shark In Mississippi Coastal Waters, Lindsay K. Bomgardner, P. O. Grammer, Angie Hoover, Anna Millender, Jeremy Higgs, Jill M. Hendon, Michael J. Andres
Presence Of Potential Nursery Habitat For The Lemon Shark In Mississippi Coastal Waters, Lindsay K. Bomgardner, P. O. Grammer, Angie Hoover, Anna Millender, Jeremy Higgs, Jill M. Hendon, Michael J. Andres
Gulf and Caribbean Research
No abstract provided.
Oyster Horizons: Spatial Prioritization For Oyster Restoration At Alabama Living Shorelines, Trinity Henry-Jack, Aaron Bland, Christa Russell, Ronald Baker
Oyster Horizons: Spatial Prioritization For Oyster Restoration At Alabama Living Shorelines, Trinity Henry-Jack, Aaron Bland, Christa Russell, Ronald Baker
Gulf and Caribbean Research
No abstract provided.
Temporal And Spatial Changes In Phytoplankton Communities In A Shallow Coastal Estuary, Justin Osborne, Jeneil Patel, Jennifer L. Debose
Temporal And Spatial Changes In Phytoplankton Communities In A Shallow Coastal Estuary, Justin Osborne, Jeneil Patel, Jennifer L. Debose
Gulf and Caribbean Research
No abstract provided.
Investigating Nekton Response To Changing Salinities In The Mississippi Sound: An Experimental And Statistical Approach, Adam Murray
Master's Theses
The Mississippi Sound provides nursery habitats for many coastal species and is recognized for its commercial fisheries. Previous freshening events linked to the Bonnet Carré Spillway, a Mississippi River flood diversion structure, proved catastrophic for oyster populations in the Mississippi Sound, but effects on mobile fish and shellfish species are not well-defined. The planned Mid-Breton Sediment Diversion (MBSD), an initiative to combat wetland loss, is also forecasted to lower salinities in the region, increasing the need to better understand responses of commercially and ecologically important species to freshening events. The objective of this study was to characterize effects of salinity …
Identifying New Potential Breeding Pond Sites For The Dusky Gopher Frog In Southern Mississippi, Shelbie Kellum
Identifying New Potential Breeding Pond Sites For The Dusky Gopher Frog In Southern Mississippi, Shelbie Kellum
Master's Theses
The main objective of this thesis was to identify potential new pond sites across southern Mississippi for the critically endangered dusky gopher frog (DGF). Ephemeral ponds are the preferred breeding habitat for the species, but they are quite rare in the region due to the diminishment of the longleaf pine ecosystem. This research addresses gaps in the current literature by providing a broad overview of dusky gopher frog breeding habitat identification. LiDAR derived datasets as well as tools within ArcGIS Pro were utilized in order to perform spatial analysis on sites of interest in south Mississippi. By using this methodology …
Stable Isotope Analysis Of Manatee Vibrissae To Investigate Individual Patterns Of Resource Use In The Northern Gulf Of Mexico, Levette Tucker, Mackenzie L. Russell, Elizabeth E. Hieb, Ruth H. Carmichael, Carl S. Cloyed
Stable Isotope Analysis Of Manatee Vibrissae To Investigate Individual Patterns Of Resource Use In The Northern Gulf Of Mexico, Levette Tucker, Mackenzie L. Russell, Elizabeth E. Hieb, Ruth H. Carmichael, Carl S. Cloyed
Gulf and Caribbean Research
No abstract provided.
Benthic And Epibenthic Invertebrate Assemblages Associated With Estuarine Submerged Aquatic Vegetation Differ Between Native And Invasive Plants, Marissa Hall, Kathryn O'Shaughnessy, Bethany Kiley, Ashley Mcdonald, Taber Faurie, Zoey Hendrickson, Anna Reimer, Samantha Smith, Charles Martin
Benthic And Epibenthic Invertebrate Assemblages Associated With Estuarine Submerged Aquatic Vegetation Differ Between Native And Invasive Plants, Marissa Hall, Kathryn O'Shaughnessy, Bethany Kiley, Ashley Mcdonald, Taber Faurie, Zoey Hendrickson, Anna Reimer, Samantha Smith, Charles Martin
Gulf and Caribbean Research
Estuarine submerged aquatic vegetation (SAV) provides vital habitat for macroinvertebrate communities that support diverse food webs and subsequent ecosystem services. Invasive SAV, however, has the potential to alter estuarine food webs through competition with native SAV, resulting in different associated biological communities. In the Mobile-Tensaw Delta (Alabama, USA), the invasive Eurasian milfoil, Myriophyllum spicatum, is fast becoming the dominant SAV, out-competing native SAV such as wild celery, Vallisneria americana. This study investigated the above- and belowground macroinvertebrate assemblages associated with these SAV habitats. We found significantly different assemblages between the SAV, with V. americana supporting more even and …
A Multiscale Linkage Between Riverscape And Fish Community Coevolution, Loren W. Stearman
A Multiscale Linkage Between Riverscape And Fish Community Coevolution, Loren W. Stearman
Dissertations
Sediment dynamics are foundational to stream and watershed morphology. Yet aquatic ecologists have relied on an oversimplified model of sediment dynamics characterizing sediments as agents of stream bed burial, and which fails to describe many types of aquatic habitat evolution. In this dissertation I employ both fluvial geomorphic and ecological frameworks to gain a deeper understanding of how sediment dynamics shape stream morphology and fish community evolution at multiple scales. Using a paired historic and contemporary approach, I analyzed geomorphic evolution and fish community change in the Bayou Pierre, Mississippi, from the 1980s to recent. Patterns of erosion due to …
Identifying Stable Isotope Patterns Among Taxa, Sites, And Environmental Variables In The Eastern Mississippi Sound, Evan C. Marth, Carl S. Cloyed, Ruth H. Carmichael
Identifying Stable Isotope Patterns Among Taxa, Sites, And Environmental Variables In The Eastern Mississippi Sound, Evan C. Marth, Carl S. Cloyed, Ruth H. Carmichael
Gulf and Caribbean Research
No abstract provided.
Assessment Of Living Shorelines For Restoring Fish Habitats: A Case Study From Coastal Alabama, Claire Legaspi, Matheus De Barros, Alexandra Rodriguez, Ronald Baker
Assessment Of Living Shorelines For Restoring Fish Habitats: A Case Study From Coastal Alabama, Claire Legaspi, Matheus De Barros, Alexandra Rodriguez, Ronald Baker
Gulf and Caribbean Research
No abstract provided.
A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat
A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat
Gulf and Caribbean Research
Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …
Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey
Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey
Gulf and Caribbean Research
Thalassia testudinum often dominates seagrass meadows of the Florida panhandle but few measurements of productivity, biomass, density, turnover or leaf area index in this region have been made. We targeted 5 estuaries located at similar latitudes, 30⁰ ± 0.3⁰N: Big Lagoon, Santa Rosa Sound, St. Andrew Bay, St. Joseph Bay, and St. George Sound. This study was one component of a collaborative partnership of state and local researchers examining factors preventing recovery in panhandle estuarine areas that had historically contained seagrass in the 1940s and 1950s. Measurements were made twice in 2016, once in June and then again in summer …
Hide And Seek: An Exploration Of Antipredator And Predator Avoidance Mechanisms In Orthopodomyia Signifera In Response To Predation From Toxorhynchites Rutilus, Nathaniel Dahlberg
Hide And Seek: An Exploration Of Antipredator And Predator Avoidance Mechanisms In Orthopodomyia Signifera In Response To Predation From Toxorhynchites Rutilus, Nathaniel Dahlberg
Master's Theses
There have been many observations of larval Orthopodomyia signifera coexisting with the predator Toxorhynchites rutilus. There are three hypotheses that could explain how Or. signifera resists predation from Tx. rutilus. The first hypothesis states that larvae adapt behavioral changes that limit predation. The second hypothesis states thoracic setae serve as a physical defense that prevents Tx. rutilus from grasping Or. signifera. The third hypothesis states Or. signifera possess a chemical defense indicated by aposematic coloration. To test the first hypothesis larval Or. signifera were exposed to conspecific and heterospecific predation cues and their behavior was observed. Both cues …
Detecting Trends In Abundance And Distribution Of Seagrasses In Lake Worth Lagoon, Palm Beach County, Florida, James R. Kerfoot Jr., Samantha N. Jones, Michael H. Schiebout, Beth Orlando
Detecting Trends In Abundance And Distribution Of Seagrasses In Lake Worth Lagoon, Palm Beach County, Florida, James R. Kerfoot Jr., Samantha N. Jones, Michael H. Schiebout, Beth Orlando
Gulf and Caribbean Research
Over the past 15 years, seagrass community stability has varied in estuaries throughout Florida. This study sought to model potential patterns of physiochemical parameters and community composition that may correlate with the fluctuation of seagrass populations in Lake Worth Lagoon (LWL), Palm Beach County, FL over time (2007–2019). Seven transects and 4 polygon areas throughout the LWL were established and stratified along a north—south gradient. Sites were sampled annually (May–August) for water quality, seagrass and macroalgal abundance, and community composition. Models developed to explain macrophyte abundance and composition were assessed using Akaike Information Criterion. Interaction between year and site best …
Intraspecific Potency Of Predation Risk Cues, Delbert Lee Smee, Benjamin Belgrad
Intraspecific Potency Of Predation Risk Cues, Delbert Lee Smee, Benjamin Belgrad
Gulf and Caribbean Research
No abstract provided.
A Study Of Red Snapper (Lutjanus Campechanus) Ecology In The Northern Gulf Of Mexico And The Effect Of Variable River Outflow Using Stable Isotope Analysis Of The Food Web And Eye Lenses, Caitlin C. Slife
Dissertations
In the Mississippi Bight and surrounding waters, river outflow impacts the basal resources of the Red Snapper food web, altering carbon sources and impacting prey and predator isotopes. In this study, the impact of riverine outflow on nutrients, particulate organic matter (POM), and physical water parameters on Red Snapper and their food web was analyzed using stable isotope and stomach content analysis over 5 years. The Mississippi, Pearl, Pascagoula, and Mobile rivers were included in the analysis of river impact. The Mississippi and Mobile rivers were found to significantly impact nutrients and POM in the region. River outflow was also …
Investigation Of Dead Ocean Quahogs (Arctica Islandica) Shells On The Mid-Atlantic Bight Continental Shelf, Alyssa Leclaire
Investigation Of Dead Ocean Quahogs (Arctica Islandica) Shells On The Mid-Atlantic Bight Continental Shelf, Alyssa Leclaire
Master's Theses
Ocean quahogs, Arctica islandica, are a long-lived, widely dispersed, biomass dominate in the Mid-Atlantic; therefore, quahog shells are valuable resources for studying climate change over time. Recently, dead ocean quahog shells were discovered south and inshore of the present biogeographic range of this animal. The presence of ocean quahog shells outside the current range is presumably a consequence of past regressions and transgressions of the Cold Pool, the bottom-trapped, cool body of water that allows boreal animals to live at lower latitudes. Dead ocean quahog shells were collected offshore of the DelMarVa Peninsula then radiocarbon-dated, evaluated for taphonomic condition, …
Disturbance Ecology Of The Sonadora River Rock Pool Insect Assemblage At Luquillo Experimental Forest, Puerto Rico, Patrick Gilkey
Disturbance Ecology Of The Sonadora River Rock Pool Insect Assemblage At Luquillo Experimental Forest, Puerto Rico, Patrick Gilkey
Master's Theses
Freshwater rock pools can serve as habitat for aquatic insects. Flash-flooding can have profound effects on insect communities in streams and rivers, but these effects have not been studied on freshwater rock pools. The goal of this thesis was to describe ecological patterns of the Sonadora River rock pool insect community at the Luquillo Experiment Forrest, Puerto Rico, specifically in response to intense flash-flooding, and then perform experiments to elucidate possible processes to explain those patterns. The rock pools contained primarily three taxa of Dipteran (true-fly) larvae, in order of decreasing abundance, 1) a newly discovered species of ceratopogonid (biting …
Investigation Of Dna Variability And Phylogenetic Relationships Of Perlesta (Plecoptera: Perlidae) In Mississippi, James C. Valentine, Mac H. Alford
Investigation Of Dna Variability And Phylogenetic Relationships Of Perlesta (Plecoptera: Perlidae) In Mississippi, James C. Valentine, Mac H. Alford
Master's Theses
The genus Perlesta Banks, 1906 (Plecoptera: Perlidae) consists of 35 species, 33 native to the United States and Canada and two native to China. For over a century these small, brown stonefly adults and freckled yellow nymphs have gone by the name of the type species of the genus, Perlesta placida, but taxonomic work in the genus since 1989 has resulted in the recognition of additional species. These species were mostly recognized and described using morphological characteristics, but two areas that are lacking include (1) linking nymphs to adults and (2) phylogenetic analysis of all species occurring in Mississippi …
An Assessment Of The Diverse Freshwater Turtle Fauna Of Mississippi, Lucas Haralson
An Assessment Of The Diverse Freshwater Turtle Fauna Of Mississippi, Lucas Haralson
Master's Theses
Nestled within the Southeastern United States Turtle Priority Area, Mississippi boasts impressive freshwater turtle diversity and is home to 8.6% of extant turtle species. Despite this impressive richness, few studies have assessed freshwater turtle assemblages in this hotspot of aquatic diversity. This research aimed to elucidate the distributions and abundances of freshwater turtle species through a statewide investigation of all major river drainages of the state. Using baited hoop nets (90 cm and 120 cm diameter), turtles were collected, identified to species and sex, and measured, before being released. Turtle assemblages were assessed in both lotic and lentic environments from …
An Examination Of The Influence Of Multi-Scale Processes And Connectivity On The Population And Assemblage Dynamics Of Headwater Fishes, Josh P. Hubbell
An Examination Of The Influence Of Multi-Scale Processes And Connectivity On The Population And Assemblage Dynamics Of Headwater Fishes, Josh P. Hubbell
Dissertations
Typified by their branching pattern, headwaters are numerically abundant as the density of these habitats increases with increasing distance from the base of a dendritic river system. Connectivity among headwaters is complex, resulting in the spatial isolation of populations. Headwater specialists have evolved a suite of traits that permit these species to permanently reside within these habitats. The spatial configuration and connectivity of headwaters has repercussions for metapopulations and meta-assemblages. I investigated how multi-scale processes and connectivity influenced the patch occupancy, coexistence, movement ecology, population structure, and gene flow of headwater specialists. In chapter two, I used occupancy modeling to …
Effects Of Infection Of The Protist Parasite, Dermomycoides Sp., In Dusky Gopher Frog Tadpoles, Jaime Smith
Effects Of Infection Of The Protist Parasite, Dermomycoides Sp., In Dusky Gopher Frog Tadpoles, Jaime Smith
Master's Theses
Infections of the protist parasite, Dermomycoides sp. are thought to have caused several years of low recruitment in the dusky gopher frog (Rana sevosa) populations. I evaluated the effects of density of the infective zoospores, host developmental stage, and tadpoles' ability to acquire resistance to Dermomycoides sp. on dusky gopher frog tadpoles. Tadpoles were exposed to zoospore densities of 0, 250, 500, and 750 zoospores/µL at Gosner stage 25, and we found no significant differences among treatments in tadpole mortality. In evaluating susceptibility by development stage, I exposed R. sevosa to 50 zoospores/µL as eggs, embryos, hatchlings, and …