Terrestrial and Aquatic Ecology Commons^™

Beyond Better Conditions: Seaweed Farming And The Number Of Sentient Animals In Aquaculture, Shrilaxmi Patil, Matthew Unerman, Wasseem Emam

Animal Sentience

Oldfield & Bonano (2024) (O&B) document how far  fish welfare research lags behind welfare research in other animals. We share O&B’s feelings-based concept of welfare and agree that aquaculture seeded this field; but research volume has not scaled with animal numbers: Welfare attention per farmed fish or decapod remains negligible. Along the lines of preceding commentaries (Maia 2024, Mather 2024), we treat farmed aquatic animals as individuals rather than tonnage. We then raise a point so far absent from the commentary on O&B so far: reducing the number of sentient animals entering intensive systems. Coastal seaweed farming, which cultivates non-sentient …

Reel Into Fishing!: Providing A Recreational Fishing Education Program For Youth, Amelia Valente, Douglas R. Zemeckis, Lisa Morse, Gene Nigro

Journal of Extension

New Jersey is known as the Garden State, but with over 130 miles of Atlantic coastline, it also has very productive marine ecosystems that offer numerous opportunities for recreational marine fishing. The International Game Fish Association, a nonprofit organization committed to the conservation of game fish and the promotion of responsible, ethical angling practices, collaborated with Rutgers Cooperative Extension to host a youth educational program entitled Reel Into Fishing! The objective is to educate participants through hands-on engagement on ethical fishing practices and marine science to help develop the next generation of responsible anglers.

Recreational Fishing Location Guide, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Please note: this version (6th edition) published in 2026 replaces the version published in 2023.

This guide has been developed to help you identify the fishing locations that you may visit. The purpose of this guide is to enhance consistent and accurate identification of fishing locations and block numbers within each Bioregion. If you are unsure about a particular location, please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

2026 Workshop On Bridging The Gaps: Tackling Microplastics And Nanoplastics Challenges In Coastal Ecosystems, Shenghua Wu, Kaushik Venkiteshwaran, Melike Dizbay-Onat, Alexandra Stenson, Jinhui Wang, Tina Miller-Way, Ebenezer Nyadjro, Bhuvnesh Bharti, John Weinstein, Yi Bao, Shihui Shen, Valerie Longa, Shenghua Zha, John Cleary, Marty Lind

Workshops

This report presents the findings from the 2026 Workshop on Tackling Microplastics and Nanoplastics (MNPs) in Coastal Ecosystems, which took place in Mobile, Alabama. More than 140 experts from universities, government, industry, and community organizations gathered to address the increasing issue of MNPs in coastal regions.

Acute Effects Of The Psychoactive Pollutant Fluoxetine On The Antipredator Behavior Of The Gulf Killifish (Fundulus Grandis), Semyra Reus

Honors Theses

Pharmaceutical contaminants are increasingly prevalent in aquatic environments, yet their sublethal effects on ecologically relevant behaviors remain poorly understood, particularly in estuarine systems. Selective serotonin reuptake inhibitors (SSRIs), such as fluoxetine, are of particular concern due to the conserved role of serotonin in regulating behavior across vertebrates. Here, we investigated how acute exposure to environmentally relevant concentrations of fluoxetine influences anti-predator behavior in Gulf killifish (Fundulus grandis), a key estuarine fish commonly found in saltmarsh habitats. Killifish were exposed to control (0 ng/L), low (17.8 ng/L), and high (596 ng/L) fluoxetine concentrations and subsequently tested in the presence …

Population Structure And Connectivity Of Atlantic Nurse Sharks (Ginglymostoma Cirratum) In The Bahamas And Outlying Areas, Baylie A. Fadool

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding animal ecosystem dynamics and behavior at the individual and population levels is essential for identifying life-history patterns and important areas for management and conservation. Marine fish species often face minimal geographic barriers to movement, but environmental (temperature, salinity, current) or intrinsic barriers (philopatry, site fidelity) can dictate gene flow. Atlantic nurse sharks (Ginglymostoma cirratum) are an International Union for Conservation of Nature (IUCN) listed ‘vulnerable’ species and present a unique opportunity to investigate patterns of population structure and connectivity in large-bodied sharks. They are benthic and display reproductive philopatry, with recent work suggesting they have the capacity …

Ecological Responses To Living Shoreline Restoration, Aaron S. Bland

Graduate Theses and Dissertations (2019 - present)

Coastal built communities and natural coastal ecosystems face similar and interrelated hazards: shoreline sediment erosion, shoreline retreat, and worsening storms, each of which is exacerbated by relative sea level rise. Living shorelines are coastal defense projects that incorporate natural habitats to provide more sustainable shoreline defense and improve the coastal ecosystem. Living shorelines have been widely adopted, but their performance has been highly variable, and the mechanisms of project success and failure are unclear. The overarching goal of this dissertation was to better understand the ecosystem responses to coastal restoration, focusing on the primary habitats of coastal salt marsh and …

Feeding Ecology In Coastal Systems, Randi L. Cannon

Graduate Theses and Dissertations (2019 - present)

Oysters (Crassostrea virginica) are critical foundation species in estuaries, providing numerous ecological and economic benefits. However, oyster populations have diminished worldwide. Effective oyster restoration and aquaculture require a mechanistic understanding of the physiological and environmental factors that govern oyster feeding, growth, and resilience under changing coastal conditions. We investigated how oyster ploidy and environmental conditions influenced oyster feeding and investigated how changes in abiotic conditions affected behavioral performance of oyster drills (Stramonita spp.), a key oyster predator. To better understand feeding responses and behaviors of both predator and prey we 1) used in-situ filter feeding assays to determine if feeding …

Teeth That Tell Time: Elemental Analysis From Shark Teeth, Gisele-Elizabeth Perez, David Turner

Research Papers

Sharks (Chondrichthyes) have hunted in the oceans for over 400 million years, their teeth leaving history behind, constantly becoming a part of the fossilization process (Worm et al. 2013). Their survival throughout 5 major extinctions is due to their ability to adapt easily with slow metabolism, a wide range of diet, and an efficient physiology. Shark teeth are vital to the hunting and consumption of their prey, making it a point for scientists to study them. Their tooth minerals contain fluorapatite in their enameloid, and dentin in the “root” of the tooth, with extinct species containing dentin and hydroxyapatite in …

Fisheries Occasional Publication No. 151 - Response To 2025 External Review Of Integrated Stock Assessments For Key Wa Demersal Indicator Stocks, Brett Crisafulli, Emily A. Fisher, Matias Braccini, Rubie Evans-Powell, Fabian I. Trinnie, Ainslie Denham, S. A. Hesp

Fisheries Occasional Publications

Consistent with national trends, the Department of Primary Industries and Regional Development (DPIRD) is transitioning to the globally recognised Stock Synthesis (SS) platform to support more robust, transparent, and internationally aligned assessments. To ensure this transition remains scientifically sound, DPIRD commissioned an independent expert review in 2025, following a previous review in 2024. The 2025 review was conducted by Professor André Punt and focused on integrated models for three key WA fish stocks: red emperor in the Kimberley, WA dhufish in the southern West Coast Bioregion, and sandbar shark at the statewide level. This publication summarises the findings and recommendations …

Fenced And Feral: Farming And Spread Of Flowerhorn (Amphilophus Spp.) In Lake Sampaloc, Philippines, Janice A. Ragaza, Hannah Nicole Gasmen

Environmental Sustainability

This study examines the spread and ecological impact of invasive Flowerhorn cichlids (Amphilophus spp.) in Lake Sampaloc, Philippines, driven by both accidental release and intentional aquaculture practices. Field observations and literature reveal that these highly adaptable and aggressive fish outcompete native species, contributing to biodiversity decline amid increasing pollution, eutrophication, and microplastic contamination. Their phenotypic plasticity allows them to thrive in degraded environments, further exacerbating ecological imbalance. While local communities have begun utilizing Flowerhorns for ornamental trade and potential aquafeed production, such practices risk reinforcing their proliferation. The study highlights the need for integrated management strategies combining biosecurity, pollution control, …

Fisheries Occasional Publication No. 150 - Response To 2024 External Review Of Integrated Stock Assessments For Key Wa Demersal Indicator Stocks, Rubie Evans-Powell, S. A. Hesp, Ainslie Denham, Emily A. Fisher, Rachel Marks, Fabian I. Trinnie, Brett Crisafulli

Fisheries Occasional Publications

In Western Australia (WA), stock assessments for key demersal species, including snapper and red emperor, have traditionally used bespoke integrated models developed in-house by the Department of Primary Industries and Regional Development (DPIRD). In line with other Australian jurisdictions, DPIRD is transitioning to Stock Synthesis (SS) as its primary platform for integrated stock assessments of WA finfish. To support this transition, DPIRD commissioned an independent expert review of recent integrated models applied to three demersal stocks. This publication responds to recommendations from Professor André Punt (University of Washington and CSIRO) in his 2024 review, which examined assessments for Pilbara red …

Rewilding The Coral Reefs, Magali Rodriguez, Luciana Alvillar

Posters - 2026

Coral reefs are among the most valuable ecosystems globally, contributing an estimated $10 trillion annually and supporting hundreds of millions of people through food, livelihoods, and coastal protection. (NOAA 2026) They also provide critical habitat for diverse marine species. However, reefs are rapidly declining due to rising ocean temperatures, acidification, pollution, invasive species, and physical disturbances. Globally, 30–50% of coral reefs have already been lost(NOAA 2026), and without intervention, many may face extinction by the end of the century. Rewilding and restoration efforts have become essential strategies to address this crisis. Initiatives such as NOAA’s Coral Reef Conservation Program highlight …

Oyster Drill (Stramonita Haemastoma Complex) Habitat Preferences In A Shallow Coastal Estuary, Coen Mcgarrah, Cynthia Lupton, Eric Sparks, Jennifer L. Debose

Gulf and Caribbean Research

Southern oyster drill snails (Stramonita haemastoma complex) are nuisance organisms within the Gulf of Mexico. This is due to their damaging impact on recovering and farmed oyster (Crassostrea virginica) populations, which are one of the drills’ main food sources. Oyster reef recovery and increased aquaculture production are priorities for Mississippi and the wider northern Gulf coast. The Grand Bay National Estuarine Research Reserve (NERR) hosts multiple oyster reef restoration sites within its boundaries, yet no comprehensive survey of oyster drill abundance has been conducted in this area to date. Additionally, knowledge of oyster drill preferences for sediment …

Parasite Party: Investigating Ecological Drivers Of Trematode Parasite Prevalence Across The Isles Of Shoals, Aimee D. Bousquet, April Blakeslee, Amy Fowler, David Buck

UNH URC Open (2026 and after)

Parasite Party: Investigating Ecological Drivers of Trematode Parasite Prevalence Across the Isles of Shoals

Evaluating Donor Site Recovery Following Halodule Wrightii Harvest For Restoration In Northwest Florida, Katie M. Konchar, Becca A. Hatchell, Colin P. Shea, Bradley T. Furman, Kent Smith

Gulf and Caribbean Research

Bare‑root harvesting of Halodule wrightii is widely used to supply donor material for seagrass restoration, yet the capacity of donor meadows to recover in near‑temperate systems remains poorly documented. We evaluated donor‑site recovery following bare‑root harvesting in St. Andrew Bay, northwest Florida—an estuary at the northern extent of Tropical Atlantic Bioregion 2 where H. wrightii exhibits strong seasonal senescence and a shortened growing season. Thirty harvest impact sites were monitored for 388 days to quantify changes in shoot density, percent frequency, and sediment elevation relative to nearby reference conditions. Shoot density and percent frequency at harvested sites converged with reference …

Preliminary Survey Of Subtidal Crustaceans On Southeast Sapelo Island, Georgia, Elise C. Mirabella, Kali Holierhoek, Kristine N. White Ph.D.

Georgia Journal of Science

The subtidal zone is the area below the low tide line that supports a wide variety of organisms, including subtidal crustaceans, which are understudied on Sapelo Island, GA. To investigate the impact of wave action on biodiversity and develop baseline data, the biodiversity of subtidal crustaceans from two beaches was compared. It was hypothesized that the beach protected from wave action would have higher biodiversity than the beach exposed to wave action. To collect the crustaceans, three different sampling methods were used on each beach: D-net, beam trawl, and Yabbi pump. The beach exposed to wave action yielded higher biodiversity …

Impacts Of Nutrient Addition And Disturbance On Coastal Dune Arthropod Communities And Trophic Interactions, Kayla Beitzel

Graduate Theses and Dissertations (2019 - present)

Coastal dune ecosystems face ongoing threats from human-mediated disturbance and altered resource availability. Because these dunes provide critical habitat for many organisms, including shorebirds, beach mice, and arthropods, changes in disturbance regimes or resource availability can impact plant communities and higher trophic levels by altering plant richness and productivity, which in turn influence arthropod abundance and diversity. To examine how disturbance and nutrient addition affect arthropod communities, we established twenty 5×5 m plots on Dauphin Island, crossing mechanical disturbance with a 10 g m⁻² addition of nitrogen, phosphorus, and potassium, replicated across five experimental blocks. Arthropods were sampled using three …

Margalefidinium Polykrikoides Group Iii Va, Usa Strain Growth And Sac-Like Pellicle Cyst Dynamics, Eduardo Pérez Vega

OES Theses and Dissertations

Margalefidinium polykrikoides is a harmful cosmopolitan dinoflagellate that blooms in coastal waters. The effect of temperature and salinity on the growth of M. polykrikoides VA strain was examined using microscopy and growth models. M. polykrikoides Group III VA strain grew better at warmer temperatures and lower salinities than M. polykrikoides Group III NY strain, Group I Korea strain, and Japan strain (unknown group). Modelers need to use the temperature and salinity growth responses from M. polykrikoides Group III VA strain to better simulate and predict M. polykrikoides blooms in the Chesapeake Bay.

Dinoflagellates produce cysts as a strategy to withstand …

Taxonomy Of Endophytic Fungi Associated With Vallisneria Neotropicalis, Md. Arafat Rashid

Graduate Theses and Dissertations (2019 - present)

This study presents the first comprehensive taxonomic and ecological investigation of endophytic fungi (EF) associated with the submerged aquatic macrophyte Vallisneria neotropicalis in the southern United States. Over a 12 month period, from April 2023 to March 2024, leaf samples were collected from two distinct sites in Mobile Bay, Alabama a disturbed, brackish Causeway location and a cleaner, less impacted site at Meaher State Park. Using culture dependent methods, a total of 257 fungal endophytes were isolated from 1,200 leaf segments. All isolates belonged to the phylum Ascomycota, distributed across 3 classes, 6 orders, 10 families, and 19 taxa. The …

A Compartmental Model For Annual Blue Whale Migration, Leah Glasser, Christopher Hay-Jahans, Elena Wheatley, Rhianna Yates

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Fisheries Occasional Publication No. 149 - Economic Contribution Of Wild-Catch Fishing In Western Australia, 2024: Beyond Gross Value Of Production, Dipesh Maharjan, Vilaphonh Xayavong, Ben Fraser, Rebecca Thomas

Fisheries Occasional Publications

The wild-catch fishing industry plays a significant role in Western Australia’s economy, particularly in regional communities. This report summarises the economic contribution of the commercial wild-catch fishing sector in 2024, based on REMPLAN’s input-output (I-O) modelling methodology and DPIRD data and analysis. This report focuses on key economic indicators including total economic output, gross value added (GVA), and employment (FTEs).

Key findings:

• Total Economic Output of the wild-catch fishing industry is $1.22 billion (total value of goods and services produced, including intermediate inputs)
• Gross Value Added (GVA) of the wild-catch fishing industry is $487 million (value of profit, wages, salaries …

Montserrat Developments Impacting Local Coral Reefs, Emma I. Bartholomew

2025 Symposium

Montserrat is a small island in the Caribbean, and over half of the island is in the exclusion zone because of the active volcano, Soufrière Hills. In that half was the old capital, Plymouth, which has since been abandoned, and its old port. The old port was getting less reliable and accessible, so they decided to build a new port in Little Bay, closer to the seat of government in Brades. This study explored how the addition of the new port impacted the corals in that area. We explored several different bays and recorded the diversity and health of the …

Distribution, Roles And Environmental Drivers Of Bacterial Communities In The Chesapeake And Delaware Bays, Mir Alvee Ahmed

All Dissertations

In this dissertation, water samples from the Chesapeake and Delaware Bay estuaries were analyzed to see how estuarine environmental gradients drive distributions, functional potential, growth estimates and gene expressions of bacteria. To answer this, the abundant and versatile taxa– Rhodobacterales and Actinobacteriota, along with broader particle-attached (PA) vs. free-living (FL) bacterial assemblages of these Bays were analyzed using a multifaceted ‘omics approach.

The PA fraction, differing from the FL in taxonomy, distribution, functional potential and estimated growth rates across salinities, and bays harbored genes degrading complex aggregates, and surface attachment. The FL counterpart presented genes involved in nutrient uptake …

United Seas For Resilient Reefs: A Blueprint For Coral Conservation Through International Cooperation, John J. Bohorquez, Maoz Fine, Dana I. Grieco, David A. Gill, Ali Al-Swalimih, Jacqueline Padilla-Gamino, Isaiah W. Bolden, Margaux Hein, Callum Backstrom, Melanie Mcfield, Raphael Martinez, Benjamin Midberry, Fahd Al-Guthmy, Ellen K. Pikitch, Natalia Benejam, Chen Azulay, Britt Ronen, Oren Levy, Anne Mcelroy, Karine Kleinhaus

School of Marine & Atmospheric Sciences Faculty Publications

Coral reefs are one of Earth’s most vital and threatened ecosystems. They protect coastlines, generate billions of dollars of tourism revenue, support valuable fisheries, and contribute to the development of vital medicines. Yet half of the world's coral reefs have been lost in the last 50 years, and 90% of remaining reefs are projected to die off by the middle of this century, mainly due to warming seas from climate change.

Despite these challenges there is reason for hope. Some coral reefs – such as in the northern Red Sea and Gulf of Aqaba – have demonstrated remarkable resilience to …

Ecospiritual Entanglement, Ali Vedad Yüner

Masters Theses

Land breeds culture. It gives us the resources to thrive, and in that process we establish a relationship with its constituents. With a multitude of beings inhabiting the land, a complex web of relationships develop. Biology describes these relationships as food webs; the mass entanglement of organisms in a manner that each organism nourishes the other. These webs are not just mere scientific structures but rather an interpretation of existential connections that every organism in the world, humans included, are indebted to. Food webs are the first stepping stone in the formation of culture, as they account for the engagement …

Ghosts In Glass: Ghost Crabs (Ocypode Quadrata) As Judges Of Glass Sand For Coastal Restoration, Emily Parrish

Poster Presentations

Coastal erosion is heavily impacting coastal ecosystems across the Gulf. For instance, the state of Louisiana loses a football field worth of land every 100 minutes (Couvillion, 2017). The drastic loss of coastline highlights the dire need for restoration in the Northern Gulf Coast. An unexpected solution to this sediment loss may solve two major environmental issues at once by diverting millions of tons of glass waste from entering America’s landfills each year. By crushing glass to create sand and gravel for coastal restoration, we may generate a consistent and sustainable source of substrate. Our goal is to determine the …

Morphology Of Smallmouth Bass (Micropterus Dolomieu) In Arkansas, Robert Laroche

Biological Sciences Undergraduate Honors Theses

The Smallmouth Bass, Micropterus dolomieu, is one of the most important game fishes in Arkansas. Three distinct lineages are recognized from different river basins: the Northern, Neosho, and Ouachita Smallmouth Bass. Understanding the biodiversity within this species complex inhabiting different water bodies in Arkansas is important for effective management of the fisheries resource and to guide conservation efforts. But current data on distribution of distinct forms are insufficient to guide management. The primary goals of the study presented here was to quantify morphological characteristics to identify distinct lineages of Smallmouth Bass, and to determine their specific locations within Arkansas streams …

Ghosts In Glass: Ghost Crabs As Judges Of Glass Sand For Coastal Restoration, Emily Parrish

Honors Theses

Over 60% of the Gulf of Mexico coastline is actively eroding, which has resulted in thousands of miles of lost coastline over the last 100 years. This drastic loss of coastal land highlights the dire need for coastal restoration across the entirety of the Gulf Coast. A vital aspect of restoring these eroded areas is replenishing eroded substrate, traditionally conducted through offshore dredging of substrates which comes with high economic and ecological costs. Recycled glass sand may be able to fill this role and reduce our reliance on dredging while lowering the amount of glass waste entering landfills each year. …

Variation In Thermal Tolerance Plasticity And The Costs Of Heat Exposure In The Estuarine Sea Hare, Phyllaplysia Taylori, Richelle L. Tanner, Rauri C. K. Bowie, Cynthia Y. Wang-Claypool, Jonathan H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Climate change is increasing average temperatures and the frequency and intensity of thermal extremes in coastal marine environments. Organisms in coastal marine habitats are accustomed to environmental fluctuations and possess physiological plasticity that may be advantageous in response to increased occurrence of extremes. To examine whether such plasticity is locally adapted to environmental conditions, we investigated the relationship between genetic diversity and thermal tolerance plasticity in 11 populations of the direct-developing intertidal sea hare, Phyllaplysia taylori, on the western coast of the United States. Using whole-organism metrics of muscle function and metabolic rate and a ddRADseq genomic approach, we …