Terrestrial and Aquatic Ecology Commons^™

Dna Metabarcoding Reveals Provisioning Of Pollution-Sensitive Aquatic Insects, Resource Partitioning, And Dietary Shifts Among Breeding Neotropical Migratory Songbirds In A Riparian Habitat, Brian K. Trevelline

Electronic Theses and Dissertations

Elucidating the diet of Neotropical migratory birds is essential to our understanding of their ecology and to their long-term conservation. Beyond broad taxonomic or morphological categories, however, the diet of Neotropical migrants is poorly documented. Using the molecular techniques of DNA barcoding and next-generation sequencing, we elucidated the diet of Neotropical migratory songbirds breeding in the riparian zones of headwater Appalachian streams. This approach resulted in a genus- or species-level description of diets that improved the current understanding of how songbirds utilize aquatic prey resources in riparian habitats. Furthermore, our approach revealed that breeding songbirds partition prey resources within a …

Distribution Changes, Genetic Population Structure, And A Novel Environmental Dna (Edna) Detection Method For Darters (Subgenus Nothonotus) In The Upper Ohio River Watershed, Anthony S. Honick

Electronic Theses and Dissertations

In the upper Ohio River watershed three species of small-bodied benthic fish the Bluebreast Darter, Etheostoma (Nothonotus) camurum (Cope), the Tippecanoe Darter, Etheostoma (Nothonotus) tippecanoe Jordan and Evermann, and the Spotted Darter, Etheostoma (Nothonotus) maculatum Kirtland previously existed in disjunct distributions due to poor water quality and habitat degradation. Signs of recovery indicated that these species were moving from areas of refugia into the deeper mainstem waters of the Allegheny and Ohio rivers and expanding their distributions. To provide information for the proper conservation management of these species this dissertation was divided into three stages: 1) distribution records were updated …

Fluvial-Lacustrine Processes Shaping The Landforms Of The Distal Paraguay Fluvial Megafan, Edward Limin Lo

Theses and Dissertations--Earth and Environmental Sciences

Tropical wetlands such as the Pantanal help regulate global biogeochemical cycles, but climate change is modifying these environments. Controls on environmental changes can potentially be assessed from ancient, well-dated lacustrine sedimentary records. An integrated field and laboratory approach was undertaken to study the limnogeology of Lake Uberaba in the northern Pantanal, and test whether the lake has preserved a reliable record of environmental change in its strata. This study was designed to understand how the basin accumulates sediment and to assess its sensitivity to hydroclimatic variability. The data showed that modern Lake Uberaba is a highly dynamic, freshwater fluvial-lacustrine basin. …

First Circumglobal Assessment Of Southern Hemisphere Humpback Whale Mitochondrial Genetic Variation And Implications For Management, Howard C. Rosenbaum, Francine Kershaw, Martín Mendez, Cristina Pomilla, Matthew S. Leslie, Ken P. Findlay, Peter B. Best, Timothy Collins, Michel Vely, Marcia H. Engel, Robert Baldwin, Gianna Minton, Michael Meÿer, Lilian Flórez-González, M. Michael Poole, Nan Hauser, Claire Garrigue, Muriel Brasseur, John Bannister, Megan Anderson, Carlos Olavarría, C. Scott Baker

Research outputs 2014 to 2021

The description of genetic population structure over a species' geographic range can provide insights into its evolutionary history and also support effective management efforts. Assessments for globally distributed species are rare, however, requiring significant international coordination and collaboration. The global distribution of demographically discrete populations for the humpback whale Megaptera novaeangliae is not fully known, hampering the definition of appropriate management units. Here, we present the first circumglobal assessment of mito - chondrial genetic population structure across the species' range in the Southern Hemisphere and Arabian Sea. We combine new and existing data from the mitochondrial (mt)DNA control region that …

Occurrence Of Atlantic Tarpon, Megalops Atlanticus, Leptocephali In The Mississippi Sound Estuary, Patrick M. Graham, James S. Franks, Jason D. Tilley, Dyan P. Gibson, Evan J. Anderson

Gulf and Caribbean Research

No abstract provided.

Sandhill And Whooping Cranes, Jeb Barzen, Ken Ballinger

Wildlife Damage Management Technical Series

As sandhill crane populations continue to grow in the United States, so too does crop damage, property damage to homeowners, and the risk of crane collisions with aircraft. Whooping crane populations also continue to grow, but with a global population of about 500 individuals (as of 2017), damage is rare and problems often require different solutions due to the species’ endangered status. The behavioral characteristics and habitat needs of sandhill and whooping cranes set the stage for conflict between these birds and people. Recognizing behavioral differences between territorial and non-territorial cranes greatly improves the effectiveness of any management effort.

Human-Wildlife …

Wildlife At Airports, Travis L. Devault, Bradley F. Blackwell, Jerrold L. Belant, Michael J. Begier

Wildlife Damage Management Technical Series

Collisions between aircraft and wildlife (wildlife strikes) are common occurrences across the developed world. Wildlife strikes are not only numerous, but also costly. Estimates suggest that wildlife strikes cost the civil aviation industry in the U.S. up to $625 million annually, and nearly 500 people have been killed in wildlife strikes worldwide. Most wildlife strikes occur in the airport environment: 72 percent of all strikes occur when the aircraft is ≤500 ft (152 m) above ground level, and 41 percent of strikes occur when the aircraft is on the ground during landing or takeoff. Thus, management efforts to reduce wildlife …

An Annotated Checklist Of The Crayfishes (Decapoda: Cambaridae) Of Arkansas, Henry W. Robison, Keith A. Crandall, Chris T. Mcallister

Journal of the Arkansas Academy of Science

Prior to the present study, 56 species with 3 additional subspecies for a total of 59 different taxa of crayfishes were recognized from Arkansas. We add a single species (Carmel Crayfish, Fallicambarus schusteri) to that list, subtract a documented synonym (Procambarus ferrugenius = Procambarus liberorum), update the classification to better reflect recent phylogenetic insights, and provide an updated annotated checklist of the 59 crayfish taxa of presently known from the state. There are 8 endemic species in Arkansas, including the Bayou Bodcau Crayfish (Bouchardina robisoni), Boston Mountains Crayfish (Cambarus causeyi), Hell Creek …

Longitudinal Patterns In An Arkansas River Valley Stream: An Application Of The River Continuum Concept, A. A. Burgad, S. T. Clark, M. E. Furr, A. N. Lenard, M. E. Polett, C. D. Robinson, C. R. Sherwood, G. L. Spooner, S. J. Stoughton, S. R. Adams

Journal of the Arkansas Academy of Science

The River Continuum Concept (RCC) provides the framework for studying how lotic ecosystems vary from headwater streams to large rivers. The RCC was developed in streams in eastern deciduous forests of North America, but watershed characteristics and land uses differ across ecoregions, presenting unique opportunities to study how predictions of the RCC may differ across regions. Additionally, RCC predictions may vary due to the influence of fishes, but few studies have used fish taxa as a metric for evaluating predictions of the RCC. Our goal was to determine if RCC predictions for stream orders 1 through 5 were supported by …

An Estimation Of Potential Salmonid Habitat Capacity In The Upper Mainstem Eel River, California, Emily J. Cooper

Cal Poly Humboldt theses and projects

In Northern California’s Eel River watershed, the two dams that make up the Potter Valley Project (PVP) restrict the distribution and production of anadromous salmonids, and current populations of Chinook Salmon (Oncorhynchus tshawytscha) and steelhead trout (O. mykiss) in the upper mainstem Eel River are in need of recovery. In anticipation of the upcoming FERC relicensing of the PVP, this project provides an estimation of the extent of potential salmonid habitat and its capacity for steelhead trout and Chinook Salmon in the upper mainstem Eel River watershed above the impassable Scott Dam. Using three fish passage …

Enrichment Use & Social Interactions In A Mixed-Species Enclosure Of Sumatran (Pongo Abelij) & Bornean Orangutans (P. Pygmaeus) & Northern White-Cheeked Gibbons (Nomascus Leucogenys), Emily Veitia

All Master's Theses

Enrichment is an aspect of captive husbandry that has been shown to positively impact animals’ well-being and can be designed to encourage species-typical behaviors, such as foraging and arboreality. Enrichment can include housing together multiple compatible species. Orangutans are sympatric with siamangs and agile and Bornean gibbons, so several zoos house these four Asian ape species in the same enclosure, in part, as social enrichment. In my study, I observed enrichment use and social interactions in a mixed-species enclosure at the Oregon Zoo, which housed two Sumatran (Pongo abelii) and two Bornean (P. pygmaeus) orangutans with …

Burbot Growth Rates In A Northern Mesotrophic Lake, Samuel J. Peterson

Journal of Earth and Life Science

Burbot Lota lota has a circumpolar distribution throughout cold-water areas and is the only freshwater member of the family Gadidae. There are currently very few management techniques applied to Burbot throughout their northern extent. Growth is an indicator of fish health, biomass, and habitat quality; therefore, the objective of this study was to determine the growth rate of Burbot in Lake Bemidji. Burbot (n = 45) were collected along three sites on Lake Bemidji for years 2015-2017. Age was determined from sagittal otoliths, the marginal zones of which were opaque from December to May and translucent from June to November. …

Effects Of Catch-And-Release Angling On Egg Densities In Largemouth Bass Nests, Tyler Robinson

Journal of Earth and Life Science

Predation during early life stages of Centrarchidae offspring are a major cause of decreased reproductive success. For five-weeks Largemouth Bass Micropterus salmoides defend their broods from invaders such as Yellow Perch Perca flavescens and Bluegill Lepomis macrochirus. The focus of this study was to determine if predation upon Largemouth Bass broods increased as removal time from the nest via catch-and-release angling increased. Sampling was conducted on the Whitefish Chain, MN from 7 May - 7 June 2016, where a total of 29 nests were located and sampled. Three treatment groups were used; immediate catch-and-release, three-minute, and a seven- minute …

Effect Of Abiotic Factors On Bluegill Size Structure In Nine Central Minnesota Lakes, Ryan Henry

Journal of Earth and Life Science

Bluegill are the most targeted species of fish in Minnesota. In recent years, the abundance of slow growing, small Bluegill has increased within the state. Angler harvest of Bluegill can reduce the average length of Bluegill up to four times the original length. Abiotic factors such as maximum depth, average water clarity, littoral area, and percent littoral area can influence the dynamics of a lake system. There has been limited research on whether these abiotic factors can influence the size structure of a Bluegill population. The objective of this study is to determine if there is a direct relationship between …

Current Status And Long-Term Trends In Water Quality And Living Resources In The Virginia Tributaries And Chesapeake Bay Mainstem From 1985 Through 2015, Daniel M. Dauer, Todd A. Egerton, John R. Donat, Michael F. Lane, Suzanne C. Doughten, Cindy Johnson, Monika Arora

Status and Trends for Virginia Chesapeake Bay

(First paragraph) The period prior to the implementation of the Chesapeake Bay Monitoring Program was characterized by a marked decline in the water quality of the Chesapeake Bay. The disappearance of submerged aquatic vegetation in certain regions of the Bay, declines in the abundance of some commercially and recreationally important species, increases in the incidence of low dissolved oxygen events, changes in the Bay's food web, and other ecological problems have been related to the deteriorating water quality (e.g. USEPA, 1982,1983;Officer et al.,1984; Orth and Moore, 1984). The results of concentrated research efforts in the late 1970s and early 1980s …

Understanding Patterns And Drivers Of Alaskan Fire-Regime Variability Across Spatial And Temporal Scales, Tyler J. Hoecker

Graduate Student Theses, Dissertations, & Professional Papers

Boreal forest and tundra ecosystems are globally important because the mobilization of large carbon stocks, and changes in energy balance could act as positive feedbacks to ongoing climate warming. In Alaska, wildfire is a key driver of ecosystem structure and function, and therefore fire strongly determines the feedbacks between high-latitude ecosystems and the larger Earth system. The paleoecological record from Alaska reveals the sensitivity of fire regimes to climatic and vegetation change over centennial to millennial time scales, highlighting increased burning with warming and/or increased landscape flammability associated with large-scale vegetation changes. This thesis focuses on two studies aimed at …

Assessing Stream Channel Restoration: The Phased Recovery Framework, Jacob M. Dyste

Graduate Student Theses, Dissertations, & Professional Papers

Channel reconfiguration projects command a large portion of stream restoration resources, while long-term monitoring and research is severely underfunded and rarely implemented. This has led to a limited knowledge base about ecological response and efficacy. Although channel reconfiguration projects are being implemented to restore biological function to lotic systems, the document responses are highly variable and little evidence has shown these projects are reaching their target goals. I predicted the inconsistent response to these projects is the result of disturbance-induced successional processes and catchment-scale water quality impairment. To address how these endogenous and exogenous factors influence stream response to channel …

What Can Vigilance Tell Us About Fear?, Guy Beauchamp

Animal Sentience

Animal vigilance is concerned with the monitoring of potential threats caused by predators and conspecifics. Researchers have argued that threats are part of a landscape of fear tracking the level of risk posed by predators and conspecifics. Vigilance, which is expected to vary with the level of risk, could thus be used as a measure of fear. Here, I explore the relationship between vigilance and fear caused by predators and conspecifics. The joint occurrence of vigilance and other physiological responses to fear, such as increased heart rate and stress hormone release, would bolster the idea that vigilance can be a …

Operationalizing Fear Through Understanding Vigilance, Ralph Adolphs

Animal Sentience

Beauchamp’s target article raises important questions about the features that often accompany fear. How reliable an indicator of fear is vigilance? Is it constitutive, cause, or consequence of fear? These questions force us towards a clearer definition of “fear.”

Individual Variation In Fear Behaviour, Rob Found

Animal Sentience

Individual variation in behaviour adds another layer of complexity to studies of animal responses to fear and risk, but when individual responses are consistent, and correlated with other behaviours, these patterns can provide a structure that furthers our understanding. I interpret Beauchamp’s review of vigilance and fear from the perspective of my own studies of elk personality. Wild elk responses to changing stimuli (benign or aversive) illustrate how personality is a key factor in explaining variation in vigilance and fear behavior. Personality even influences how wildlife can learn to assess risk and adjust their fear responses accordingly.

Fear And Loathing On The Landscape: What Can Foraging Theory Tell Us About Vigilance And Fear?, Burt P. Kotler, Joel S. Brown

Animal Sentience

We discuss fear and vigilance from the perspective of foraging theory. Rather than focusing on proximate indicators of fear, we suggest that fear is an adaptation for assigning a cost to activities that incur a risk of injury or death. We use theory to provide definitions for fear and vigilance and then use that theory to compare them. We agree that there are limits to the reliability of vigilance as an indicator of fear, but we arrive at this conclusion differently.

Empathy In Dogs: With A Little Help From A Friend – A Mixed Blessing, Sabrina Karl, Ludwig Huber

Animal Sentience

Kujala (2017) presents an extensive overview of existing research on canine emotions in comparison to those of other non-human animals and humans. This commentary provides some additional research results on the intensively debated field of empathy in dogs. We focus on recent advances in the understanding of a fundamental building block of empathy — emotional contagion — and on dogs’ remarkable sensitivity for human emotions, including the skills of assistance dogs.

Consciousness In Teleosts: There Is Something It Feels Like To Be A Fish, Michael L. Woodruff

Animal Sentience

Ray-finned fish are often excluded from the group of non-human animals considered to have phenomenal consciousness. This is generally done on the grounds that the fish pallium lacks a sufficiently expansive gross parcellation, as well as even minimally sufficient neuronal organization, intrinsic connectivity, and reciprocal extrinsic connections with the thalamus to support the subjective experience of qualia. It is also argued that fish do not exhibit the level of behavioral flexibility indicative of consciousness. A review of neuroanatomical, neurophysiological and behavioral studies is presented which leads to the conclusion that fish do have neurobiological correlates and behavioral flexibility of sufficient …

Can Unconscious Brain Processes Indicate Sentience?, Vincent Taschereau-Dumouchel, Piercesare Grimaldi, Hakwan Lau

Animal Sentience

We disagree with Woodruff that we have good neurobiological reasons to think fishes are sentient, because mechanisms for consciousness are controversial even in humans. To the extent that there are consensuses in that literature, they do not support Woodruff's claims.

Cautions About Precautions, Jay R. Stauffer Jr.

Animal Sentience

Assuming an animal to be sentient in the absence of conclusive evidence to the contrary is an extreme position, hence it should not and could not be the default assumption. Birch explains how the precautionary principle may be used to substantiate decisions to give the animal the benefit of doubt. Although I am reluctant to accept all of his points, Birch has provided an excellent argument for the use of the precautionary principle for the detection of animal sentience. I agree that more research is needed to refine and understand this relationship.

A Risk Assessment And Phylogenetic Approach, Culum Brown

Animal Sentience

The precautionary principal is often invoked when talking about the evidence of sentience in animals, largely because we can never be certain what any animal is thinking or feeling. Birch (2017) offers a preliminary framework for the use of the precautionary principal for animal sentience combining an epistemic rule with a decision rule. I extend this framework by adding an evolutionary phylogentic approach which spreads the burden of proof across broad taxonomic groups and a risk assessment component which magnifies the likely impact by the number of animals involved.

The “Precautionary Principle” – A Work In Progress, Shelley Adamo

Animal Sentience

The target article by Birch illustrates the practical difficulties with the “Animal Sentience Precautionary Principle” (ASPP) while presenting potential solutions. However, the ASPP will be difficult to use without guidelines detailing how evidence of sentience should be assessed. Moreover, extrapolating conclusions found for a single species to all species within an Order is problematic. Finally, I recommend that Birch demonstrate his ASPP framework using a controversial test case to help show how it could be used in real-world situations.

Shoring Up The Precautionary Bar, Jon Mallatt

Animal Sentience

I offer four ways to reinforce Birch’s precautionary principle so it can be used effectively and practically in deciding which animals to cover by legislation for humane treatment: (1) add one more credible indicator of sentience to the BAR rule; (2) use phylogenetic classification, not the outdated Linnaean classification, to test which animal clades have sentience; (3) disentangle the pain of suffering from sentience; and (4) reconsider the sentient status of decapods and insects to remove potential inconsistencies in the proposed framework.

Scientific Uncertainty And The Animal Sentience Precautionary Principle, Michael L. Woodruff

Animal Sentience

Jonathan Birch offers the animal sentience precautionary principle (ASPP) as a framework for assigning sentience to animals. In doing this, he defines a BAR which when crossed will lead to action (ACT) and implementation of the ASPP. His effort to create a clear empirical basis for implementation of the precautionary principle in the area of animal welfare regulation is important. I argue, however, that his BAR is so low that the evidence supporting ACT is in danger of being overwhelmed by the problems of induction and the underdetermination of theory by evidence. If this happens, policy makers might well disregard …

Anecdotes Can Be Evidence Too, Heather Browning

Animal Sentience

Birch’s criterion for the precautionary principle imposes a high evidential standard that many cases will fail to meet. Reliable, relevant anecdotal evidence suggestive of animal sentience should also to fall within the scope of the precautionary principle. This would minimize potential suffering (as happened in the case cephalopods) while further evidence is gathered.