Terrestrial and Aquatic Ecology Commons^™

Oyster Reef Restoration: Impacts On Infaunal Communities In A Shallow Water Estuary, Katherine P. Harris

Honors Undergraduate Theses

Oyster reefs are important estuarine ecosystems that provide habitat to many species including threatened and endangered wading birds and commercially important fishes and crabs. Infaunal organisms (i.e. small, aquatic animals that burrow in the sediment) are also supported by oyster reef habitats. Infaunal organisms are critical to marine food webs and are consumed by many important species that inhabit coastal estuaries. However, over the past century 85% of shellfish reef habitats have been lost, making restoration of these areas vital. Due to their important role in coastal food webs, infauna is hypothesized to be a strong indicator of habitat productivity …

Monitoring The Influx Of Marine Derived Nitrogen And Characterizing Soil Food Webs Of Riparian Zones Of The Elwha River Watershed, Wa, Usa., Wendal R.H. Kane

EWU Masters Thesis Collection

Nitrogen is often the most limiting nutrient to productivity in terrestrial ecosystems, and can have large effects on ecosystem processes. Two sources of nitrogen to Pacific Northwest riparian areas are marine derived nitrogen (MDN) via anadromous pacific salmon and symbiotic nitrogen fixation via Alnus rubra. The recent removal of two large dams on the Elwha River, WA, opened up ~60 km of previously inaccessible river habitat for pacific salmon. I used naturally abundant stable nitrogen isotopes (denoted as ‰ δ15N) to establish baseline data to monitor the influx of MDN to riparian zones of Elwha River tributaries, post dam removal. …

Riparian Vegetation And The Soil Seed Bank Five Years After Dam Removal On The Elwha River, Washington, Cody C. Thomas

EWU Masters Thesis Collection

Damming of rivers is widespread and can profoundly impact riparian areas by altering the fluvial processes that drive riparian vegetation communities. Dam removal may reverse these effects; however, very few studies have examined the response of riparian vegetation to large dam removal and associated disturbances, such as the release of sediment. Understanding how dam removal impacts downstream riparian vegetation is crucial as dam removal becomes more common. The Elwha River, Washington, is the location of the largest dam removals to date and provides an unprecedented opportunity to explore questions related to dam removal and riparian vegetation. The objectives of this …

Vegetation Community Development After Dam Removal On The Elwha River, Olivia A. Morgan

EWU Masters Thesis Collection

The Elwha River is the site of the largest dam removal project in the world to date and serves as a case study for the ecological effects of large dam removal. The 2012-2014 removal of two dams on the Elwha River exposed a cumulative 2.76 km2 of previously inundated surfaces. Environmental conditions including sediment texture and nutrients, slope-aspect, dispersal distance from the river and mature forest, disturbance, and elevation vary widely across the reservoir surfaces, causing significant variation in the plant community. The first objective of my study is to continue a long-term study of the passively restored vegetation community …

Initial Assessment And Effects Of Snake Fungal Disease On Populations Of Snakes In Kentucky, Jennifer Mckenzie

Theses and Dissertations--Forestry and Natural Resources

Pathogenic fungi are increasingly associated with epidemics in wildlife populations and represent a significant threat to global biodiversity. Snake fungal disease is an emerging disease caused by the fungus, Ophidiomyces ophiodiicola, and appears to be widespread in the eastern United States. Yet an evaluation of field diagnostics, and an understanding of the population-level consequences of the disease, are lacking. First, I evaluated the use of clinical signs to predict the presence of O. ophiodiicola across season and snake habitat affiliation (aquatic or terrestrial) and I compared two sampling methods to see if collection method impacts PCR result. Overall, snakes with …

Expanding Greenland Seagrass Meadows Contribute New Sediment Carbon Sinks, Núria Marbà, Dorte Krause-Jensen, Pere Masque´, Carlos M. Duarte

Research outputs 2014 to 2021

The loss of natural carbon sinks, such as seagrass meadows, contributes to grenhouse gas emissions and, thus, global warming. Whereas seagrass meadows are declining in temperate and tropical regions, they are expected to expand into the Arctic with future warming. Using paleoreconstruction of carbon burial and sources of organic carbon to shallow coastal sediments of three Greenland seagrass (Zostera marina) meadows of contrasting density and age, we test the hypothesis that Arctic seagrass meadows are expanding along with the associated sediment carbon sinks. We show that sediments accreted before 1900 were highly 13C depleted, indicative of low inputs of seagrass …

Muskrats, James E. Miller

Wildlife Damage Management Technical Series

The muskrat (Ondatra zibethicus) is a common, semi-aquatic rodent native to the United States (Figure 1). It spends its life in aquatic habitats and is well adapted for swimming.

Although muskrats are an important part of native ecosystems, their burrowing and foraging activities can damage agricultural crops, native marshes and water control systems, such as aquaculture and farm ponds and levees. Such damage can significantly impact agricultural crops like rice that rely on consistent water levels for growth.

Muskrats also cause damage by eating agricultural crops, other vegetation, and crayfish, mussels and other aquaculture products. Loss of vegetation …

Wild Turkeys, James E. Miller

Wildlife Damage Management Technical Series

Like other bird and mammal species whose populations have been restored through conservation efforts, wild turkeys (Figure 1) are treasured by many recreationists and outdoor enthusiasts. Wild turkeys have responded positively to wildlife habitat and population management. In some areas, however, their increased populations have led to increased damage to property and agricultural crops, and threats to human health and safety. Turkeys frequent agricultural fields, pastures, vineyards and orchards, as well as some urban and suburban neighborhoods. Because of this, they may cause damage or mistakenly be blamed for damage. Research has found that despite increases in turkey numbers and …

Finding The Green-Eyed Monster In The Brain Of A Dog, Peter Singer

Animal Sentience

That dogs show behavior suggestive of jealousy has long been known and has been demonstrated under controlled conditions. Cook et al. have now shown arousal in the amygdala when dogs see a caregiver feeding another dog. This finding has ethical significance in two respects. First, the consideration shown by the investigators for the welfare of their experimental subjects sets an example for other researchers using animals. Second, the greater understanding of the emotional lives of animals should lead to more concern for their needs.

Investigating The Ecology Of A Rare Species On St. John, Usvi: Reintroducing Solanum Conocarpum In Light Of Climate Change, Cecilia Rogers

Senior Honors Projects, 2010-2019

Approximately two thirds of St. John is National Park territory. However, the land has been threatened with tourism and development, greatly impacting island biodiversity. One species that may become extinct due to this degradation is Solanum conocarpum. S. conocarpum is a rare shrub, endemic to the dry tropical forests of St. John, USVI. This plant is a species of conservation concern and is one of very few native and endemic plants on this island. Very little is known about the ecology and reproduction of S. conocarpum. Most plants are found on the southern half of the island. Recent observations …

Incidental Captures Of Plains Spotted Skunks (Spilogale Putorius Interrupta) By Arkansas Trappers, 2012-2017, D. Blake Sasse

Journal of the Arkansas Academy of Science

Arkansas trappers were surveyed following the 2012 and four subsequent trapping seasons regarding accidental captures of spotted skunks while attempting to trap other species. A total of 132 trappers reported capturing spotted skunks although further investigation confirmed the validity of only 42 reports from trappers that caught a total of 60 spotted skunks. Incidental captures were rare; only 0.35-1.29% of trappers each year caught spotted skunks and came primarily from the Ozark and Ouachita regions of the state.

Persistence Of Stream Restoration With Large Wood, Redwood National And State Parks, California, Diedra L. Rodriguez

Cal Poly Humboldt theses and projects

The conservation and recovery of anadromous salmonids (Oncorhynchus sp.) depend on stream restoration and protection of freshwater habitats. In-stream large wood dictates channel morphology, increases retention of terrestrial inputs such as organic matter, nutrients and sediment, and enhances the quality of fish habitat. Historic land use/land cover changes have resulted in aquatic systems devoid of large wood. Restoration by placement of large wood jams is intended to restore physical and biological processes. An important question for scientists and restoration managers, in addition to the initial effectiveness of restoration, is the persistence and fate of large wood installations. In this …

Small Mammal Microhabitat Use And Species Composition At A Wildlife Crossing Structure Compared With Nearby Forest, Lindsay Millward, Kristina Ernest

All Master's Theses

Expanding transportation corridors have fragmented ecosystems throughout the world, restricting the movement of organisms or acting as complete connectivity barriers. Wildlife crossing structures (WCS) can increase the permeability of roads, allowing animals to move safely between habitats. Small mammals are especially vulnerable to the effects of reduced connectivity because of their limited mobility; however, few studies have evaluated their use of WCS. This study was conducted at a WCS under I-90 near Snoqualmie Pass, Washington. Our objective was to evaluate the small mammal species composition at the wildlife undercrossing in comparison to adjacent restoration sites and to the nearby forest. …

Hunter Harvest Effect On The Breeding Bird Population Of Northern Pintail Anas Acuta In North America, Matthew Wang

Journal of Earth and Life Science

Hunter harvest and the effects that it can have on population dynamics is a relationship used by wildlife professionals when making management decisions. Hunter harvest can be compensatory or additive on wildlife populations and instances where hunter harvest has been a key role in a population decline, and sometimes demise, is an occurrence studied in wildlife management. Waterfowl numbers in North America have increased 17% since 1960, but during that same time frame the Northern Pintail population has decreased 40%. Hunter harvest data has been recorded by the U.S. Fish and Wildlife Service since 1961, while they have simultaneously been …

Sentience, The Final Frontier...., Shelley Adamo

Animal Sentience

Arguments for fish sentience have difficulty with the philosophical zombie problem. Progress in AI has shown that complex learning, pain behavior, and pain as a motivational drive can be emulated by robots without any internal subjective experience. Therefore, demonstrating these abilities in fish does not necessarily demonstrate that fish are sentient. Further evidence for fish sentience may come from optogenetic studies of neural networks in zebrafish. Such studies may show that zebrafish have neural network patterns similar to those that correlate with sentience in humans. Given the present uncertainty regarding sentience in fish, caution should be applied regarding the precautionary …

Sentience: All Or None Or Matter Of Degree?, Loren Martin, Robert Gerlai

Animal Sentience

The question of whether fish feel pain is muddied by anthropomorphic thinking. Comparing biological phenomena in two species should be informed by the criteria for good animal models: face validity, construct validity and predictive validity. Viewed through this lens, we argue that fish do feel pain and may possess some level of sentience. Evolutionary relatedness, hence similarities and differences between species (fish and humans in this case), are not about black vs. white but about shades of grey.

Is Superiority A Necessary Aspect Of Cruelty?, William H. Edmondson

Animal Sentience

Chapman & Huffman argue that humans inflict cruelty without apparent concern because of their categorization of the victims as inferior. The supposed inferiority of non-human animals can be argued against on the basis of documentation and analysis of behaviour. Humans continue to inflict cruelty on their own and other species. It is not obvious that a sense of superiority is a necessary aspect of cruel behaviour. Nor is it obvious that further enlightenment regarding the cognitive status of non-humans will diminish cruelty.

Microbial Community Response To Light And Heavy Crude Oil In Freshwater Systems, Timothy M. Butler

Dissertations, Master's Theses and Master's Reports

With increased demand for oil, there is an increased risk for oil spills in many environments. A number of pipelines transport oil near or across freshwater systems including the Great Lakes. Microbes are capable of breaking down oil and have thus been proposed as tools for oil spill response through bioremediation. There is a need to understand the microbial response to diverse oil types in freshwater environments due to the lack of research into this topic. This study’s main objectives are to understand how the freshwater microbial communities respond to oil, and how the bacterial communities may respond to different …

Defining Pain And Painful Sentience In Animals, Edgar T. Walters

Animal Sentience

Sentience is essential to most definitions of pain, including a detailed definition invoked by Sneddon et al. to argue that adult and perhaps larval fish feel pain. Because proving painful sentience in non-human animals is not feasible, multiple lines of indirect evidence are needed to implicate pain. This commentary examines the list of 17 criteria used by Sneddon et al. to conclude that fish have conscious pain. The criteria include tests of nociceptive, motivational, and cognitive properties useful for revealing pain-like states that can be understood biologically and be related evolutionarily to human pain. However, additional research is needed to …

Two Fallacies In Comparisons Between Humans And Non-Humans, Don Ross

Animal Sentience

The hypothesis that humans are superior to non-humans by virtue of higher cognitive powers is often supported by two recurrent fallacies: (1) that any competence shown by humans but not by our closest living relatives (apes) must be unique to humans; and (2) that grades of intelligence can be inferred from behavior without regard to motivational structures.

What Sets Us Apart Could Be Our Salvation, Anne Fawcett, Paul Mcgreevy

Animal Sentience

We agree with Chapman & Huffman that human capacities are often assumed to be unique — or attempts are made to demonstrate uniqueness scientifically — in order to justify the exploitation of animals and ecosystems. To extend the argument that human exceptionalism is against our interests, we recommend adopting the One Welfare framework, according to which animal welfare, environmental sustainability and human wellbeing are inseparably linked. Let us distinguish ourselves from other animals by resisting our short- and mid-term Darwinian inclinations, consuming less, reproducing less, and striving for a much longer-term biological fitness for us all.

On Crabs And Statistics, Jonathan Birch

Animal Sentience

I respond to commentaries by Elwood and Seth & Dienes and to a recent critique by Diggles, discussing the link between avoidance learning and sentience, the relevance of the clash between frequentist and Bayesian statistics, the risks to decapod welfare in aquaculture, and the broader concerns one may have about a “precautionary” approach to protecting invertebrates.

On Jealousy, Envy, Sex Differences And Temperament In Humans And Dogs, Eddie Harmon-Jones, Sylvia K. Harmon-Jones

Animal Sentience

Cook, Prichard, Spivak, and Berns (2018) find that dogs’ levels of trait aggression are positively correlated with their amygdala activation when observing their caregivers giving a food to a fake dog. The authors conclude that this may provide neural evidence in dogs for the experience of jealousy, an emotion that some psychologists consider to be unique to humans. Here we explain the difference between the emotions of jealousy and envy, suggesting some ideas for future experiments that may help disentangle the experience of jealousy from that of envy in dogs. We also propose ideas for future research that may yield …

Jealousy? Or Just Hostility Toward Other Dogs? The Risks Of Jumping To Conclusions, James A. Serpell

Animal Sentience

Cook et al. (2018) provide a fascinating demonstration of amygdala activation in dogs when they witnessed their owners giving food to another (fake) dog, but not when they placed food in a bucket. Dogs’ neurological responses were positively correlated with their reported levels of ‘dog-directed aggression’ as measured by the C-BARQ, and dogs with initially strong amygdala responses habituated on subsequent trials. The authors interpret their findings as possible evidence for an emotion akin to jealousy in dogs. However, alternate interpretations involving either dog aggression/fear or emotional responses to food seem more plausible and avoid the welfare risks associated with …

Good News: Humans Are Neither Distinct Nor Superior, Anne Benvenuti

Animal Sentience

Chapman & Huffman suggest that to correct our thinking about the supposed superiority of humans over other animals, we must train our reasoned investigation upon ourselves. Their thesis may usefully be viewed from within the general findings of the cognitive revolution in science, particularly findings that speak to the limits of rationality in everyday thought of humans. That we have failed — throughout a long history of scientific and philosophical thought — to ask fundamental questions about animal cognition and emotion is rooted in the fact that much of our thinking, feeling, and behaving is beyond our own immediate grasp. …

Fish And Plant Sentience: Anesthetized Plants And Fishes Cannot Respond To Stimuli, Ken Yokawa, František Baluška

Animal Sentience

Recent denial of fish sentience is at variance with the fact that all living organisms need environmental awareness in order to survive in a continuously fluctuating environment. Moreover, fish sentience – like plant sentience – is also strongly supported by the sensitivity of fishes and plants to diverse anesthetics.

If It Looks Like A Duck: Fish Fit The Criteria For Pain Perception, Julia E. Meyers-Manor

Animal Sentience

Whereas we have denied the experience of pain to animals, including human babies, the evidence is becoming clearer that animals across a variety of species have the capacity to feel pain (Bellieni, 2012). As converging findings are collected from pain studies and the study of cognition, it is becoming harder to deny that fish are among the species that do feel pain.

Incorporating Multi-Spectral Imaging Into Long-Term Upland Breeding Bird Monitoring, Kyle William Schumacher

Master's Theses or Doctor of Nursing Practice

Quivira National Wildlife Refuge in Kansas, United States partnered with Fort Hays State University Hays, KS in 2014 to begin a collaborative research project that aimed to develop a long-term monitoring protocol guided by the Comprehensive Conservation Plan for the refuge published in 2013. This plan identified specific wildlife taxa underrepresented in management impact assessments throughout the property. As a result of this plan, surveys were established to monitor interactions between upland breeding birds and the vegetation community. I conducted point count surveys in 2016, 2017, and 2018 for 122 observation points across four transects. I measured seventeen vegetation variables …

The Many Faces Of Fear And Vigilance, Guy Beauchamp

Animal Sentience

In the target article, I examined the relationship between vigilance and fear in prey animals. The joint occurrence of vigilance and other physiological responses to fear, such as increased heart rate and stress hormone release, would bolster the idea that vigilance can be a useful marker of fear. Nevertheless, a common theme in much of the empirical research is an uncoupling of vigilance and physiological correlates of fear. The commentators suggest several ways to refine the concepts of vigilance, fear, and risk. I discuss these refinements, which in the end will prove useful to assess further the relationship between vigilance …

Photosynthetic Activity Under Low Light, Danijela Lonco

Williams Honors College, Honors Research Projects

Are bacteria capable of undergoing oxygenic photosynthesis under low-light conditions inside of caves? Inside of an Australian cave, Chlorophyll f was recently discovered. This chlorophyll pigment was found to demonstrate the capability for photosynthesis, suggesting that Chlorophyll f extends the spectrum of usable light needed for oxygenic photosynthesis (Lars, 2015). Due to the findings in this study, a team went to Carlsbad Caverns to see if there were any bacteria capable of undergoing oxygenic photosynthesis under low light.