Terrestrial and Aquatic Ecology Commons^™

Sibship Analysis Of Fall And Spring Spawn Gulf Sturgeon Eggs In The Choctawhatchee River, Florida, Lyric Mccullouch

Honors Theses

The Gulf sturgeon (Acipenser oxyrinchus desotoi) is an anadromous species that inhabits rivers along the northern Gulf of Mexico. Facing challenges from overfishing and habitat alteration, the Gulf sturgeon is listed as threatened under the Endangered Species Act. This study investigated the genetic distinctiveness of fall and spring spawning groups of Gulf sturgeon in the Choctawhatchee River, a critical habitat for the species. In this study, I used microsatellite loci to analyze Gulf sturgeon eggs previously collected in the fall and spring of 2019 and 2020. The goals of this study were to verify the genetic identity of …

Seasonal Detection Of Coliphages In Freshwater Bodies At Coastal Carolina University, Ella Caldwell

Honors Theses

Bacteriophages, commonly referred to as phages, are non-living viruses that only infect bacteria. As the most abundant biological entities on Earth, understanding their role in regulating microbial populations is essential. This ongoing research aims to identify naturally occurring bacteriophages that could effectively control bacteria blooms. The primary objective of this study is to detect coliphages on Coastal Carolina University's campus and determine their viral families. Coliphages are a subgroup of bacteriophages that specifically infect coliform bacteria. Water samples were collected across multiple sites on campus, and polymerase chain reaction (PCR) was employed to amplify the viral DNA from the potential …

Distribution Of Mussels In Two Intermittent Upland Streams Of The Arkansas Valley Ecoregion, Aaron A. Brady, Seth Drake, Zach Crain, Kendall Moles

ATU Scholars Symposium

Freshwater mussels are facing an increasing need for conservation due to their declining populations. More data is needed on mussel distributions, especially in tributaries of large rivers to properly conserve and restore populations. Big Shoal Creek and Little Shoal Creek are two upland-tributaries of the Arkansas River (Lake Dardanelle) in which no records exist for freshwater mussel populations. We addressed this knowledge gap by sampling a total of 9 sites in Little Shoal Creek and 18 sites in Big Shoal Creek to determine the abundance and distribution of mussels in these streams. Mussels were sampled using a timed search approach. …

Gathering A Population Assessment Of Endemic Ozark Longear Sunfish (Lepomis Sp. Ozark) In The Illinois Bayou Watershed, Kade Zeiner

ATU Scholars Symposium

The Ozark Longear Sunfish (Lepomis sp. Ozark) is a species endemic to the Ozark Highlands and Boston Mountains, primarily found in headwater streams that dry up in the summer. Their spawning period occurs from May to August, and because of the impact dry seasons have on water level in headwater streams, there's a possibility their population and health may be impacted. As an endemic species, they play a key role in their ecosystem, and their unique position makes them significant for both ecological and recreational reasons. Because of the wide variety of Sunfish species the state offers, new recreational challenges …

A Population Study Of The Freshwater Turtles Of The Recently Expanded Lake Hydaway In Campbell County, Virginia, Joshua Sorenson

Senior Honors Theses

Freshwater turtles are an important part of the ecological systems in central Virginia. At the recently expanded Lake Hydaway, there are several turtle species for which their population characteristics were unknown, especially the prolific Eastern Painted Turtle (Chrysemys picta picta) and Red-bellied Cooter (Pseudemys rubriventris). For five weeks, the lake was surveyed for turtles using hoop nets, and the turtles were marked and measured. Population characteristics such as carapace length and sex ratio for the Eastern Painted Turtle and Red-bellied Cooter were calculated, as well as population estimates for those two species. The Red-eared Slider ( …

Designing An Optimal Thermal Preference Arena For Southern Cricket Frog (Acris Gryllus) Juveniles, Eleanor E. Briggs, David M. Phillips Jr.

Honors Theses

Climate change has been altering ecosystems across the world at a substantial rate, disrupting the delicate ecophysiological relationships between ecosystems and the organisms that live in them. Ectotherms, such as amphibians, rely on external temperatures to behaviorally thermoregulate, making it especially imperative to study their thermal biology. Thermal preference, which assesses the environmental temperature an organism would seek out in the absence of external stimuli, provides valuable information about an amphibian’s thermal biology and can be used to predict the effects of climate change on a species or population. A commonly used method to measure thermal preference is an arena …

Neotropical Catfish Diversity In Rivers Of The Guiana Shield: A Combined Approach Using Taxonomic, Functional, And Isotopic Tools, Joseph Sheffield

Undergraduate Research Conference

Rivers of the Guiana Shield in South America are very heterogenous, containing a mosaic of habitats and environmental characteristics ideal for maintaining high freshwater biodiversity. The connection between the Essequibo and Amazon rivers via the Rupununi River during the wet season plays an important role for the great diversity of Neotropical ichthyofauna. Neotropical catfishes (Siluriformes) are the second most diverse group of freshwater fishes, after the Characiformes. They span a wide range of body sizes and exhibit diverse trophic specializations, making them ideal organisms for studying the influence of body size variation on community organization and ecosystem function. We explored …

The Importance Of Wild Birds, Janice H. Cox

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

Wild birds are important in their own right, for their contribution to human wellbeing, and for their ecological value, as part of the “web of life”. Birds are sentient beings with complex thinking and social behaviors, and the ability to experience positive and negative feelings, including suffering. The ways in which birds contribute to the functioning of the world's ecosystems include: pest control, pollination, cleaning up nature, spreading seeds, keeping coral reefs alive and transforming landscapes. Yet wild bird populations are declining dramatically – with one in eight bird species threatened with extinction. Birds are one of the most important …

Drivers Of Recruitment For A Population Of Cutthroat Trout In Northern Utah, Abbigail Lane, Austin Garner

Student Research Symposium

• Understanding recruitment dynamics informs effective management of sensitive populations (Camp et al. 2020).

17 - Mapping The Spatial Distribution Of Submerged Aquatic Vegetation Using Commercial Satellite Imagery, Brandon Watson

Undergraduate Research Symposium

Seagrass in the Chesapeake Bay has seen an increase due to restoration efforts since the 90s, but with the extreme change of climate, we are unsure if the seagrass will thrive or perish, and where it will occur in the bay. Seagrass stabilizes coastal sediments, reducing erosion and protecting shorelines. It provides crucial habitats and nursery grounds for a diverse range of marine species, supporting both biodiversity and fisheries. Additionally, they play a significant role in carbon sequestration, which mitigates the effects of climate change. This study specifically looked at the area from the mouth of the Rappahannock River up …

Plant Biodiversity Of Short-Grass Prairie On An Eastern Colorado Cattle Ranch From 1988-2024, Emilee D. Cole, Zoey E. Daniels-Sneed, Matthew Galliart, Sarah Elzay

SACAD: Scholarly Activities

This survey examined the possible effects that rotational grazing and large-scale beef cattle production has on plant diversity in short-grass prairie rangeland. The survey was conducted on the Frasier Ranch, a working cattle ranch in eastern Colorado. Plant diversity was measured via species richness, ratio of cool to warm season grasses, and Shannon-Weiner Diversity Index. In this case study, it was determined that plant diversity did not change significantly in recorded years from 1988-2024.

Lawn Nutrient Availability And Run-Off During Establishment Under Enhanced Biodiversity, Masami S. Kanyuk

Environmental Studies Honors Theses

Biodiversity has consistently been found to have positive ecosystem effects, including erosion mitigation and stability of nutrient cycling. For lawns, this can translate to reducing the need for fertilizer application, and reducing soil loss and leaching that can impact water quality. This paper investigates the effects of biodiversity and plant community establishment in a lawn ecosystem on soil erosion, nitrate leaching via porewater sampling, and plant available nitrogen.

In the first growing season of PLEDGE (the Pastures and Lawns Enhanced Drought and Global-Change Experiment), we hypothesized that three-species lawns (tall fescue, dwarf white clover, and creeping thyme) would experience higher …

Impact Of Climate Change On The Diversity And Abundance Of Wintering Birds At A Northern African Wetland - Case Study Of Oglat Eddaira Wetland (Naama, Western Algeria), Ahmed Toufik Youcefi, Gouacem Ali, Litim Kouider, Haddi Leila, Messaoui Fatima

Journal of Bioresource Management

The Mediterranean regions have been classified as the areas of the world most susceptible to the effects of environmental change. These regions are sensitive to drought and rising temperatures and with heightened aridity in the next several years. The purpose of this paper is to study the effects of climate change on the diversity and abundance of wintering birds in the Oglat Eddaira wetland located in western Algeria and classified in the Ramsar list. This study is based on the comparison between some indices of biodiversity: species richness, abundance, Shannon-Weiner and Simpson Index, during the period 2015 to 2024 and …

More Choosy For Minor Foods: Diet, Seasonality And Food Selection In Sympatric Frugivorous And Folivorous Lemurs, Mitchell Irwin, Vololonirina Rahalinarivo, Bruno Ramorasata, Jean-Luc Raharison, Jean-Freddy Ranaivoarisoa, Chloé Gherardi, Jessica Rothman

Faculty Articles, Papers, and Other Scholarship

Despite traditional dietary categories common in primatology (folivore, frugivore, insectivore), most primates use one or more food types beyond their primary one. Among lemurs, folivores tend to have a complicated, long gastrointestinal tract with an enlarged cecum, shearing teeth, and microbiome adaptations to foliage, while frugivores have simple teeth and guts and fast gut passage. Yet frugivores often eat some leaves, and folivores eat some fruit, and little is known about the selection rules they follow within each food type. We quantified diet and food chemistry for two sympatric rainforest lemurs: a cathemeral frugivore (brown lemur, Eulemur fulvus) and a …

Conservation Status Of Virginia Populations Of The Rare And Jeopardized Bridle Shiner, Notropis Bifrenatus, Wayne C. Starnes, Gabriela M. Hogue, Morgan E. Raley

Southeastern Fishes Council Proceedings

The Bridle Shiner, Notropis bifrenatus (Cope, 1867), Family Leuciscidae, is a small minnow species that ranges in Atlantic coastal river drainages of eastern North America from the St. Lawrence in Canada southward to the Santee River basin of South Carolina. Over several decades notable declines throughout its range have been observed and multiple natural resource agencies note it to be jeopardized with probable extirpations evident in a number of drainages. The Virginia Department of Game and Inland Fisheries recognized the need to assess the status of the Bridle Shiner within its historical range in Virginia. Here we report the results …

Oregon Vegetation Change 1851 – 2023, Ray L. Brunner, Eleanor P. Gaines

Institute for Natural Resources Publications

This effort compares the total area and spatial overlap between vegetation classes in existing vegetation maps of different eras to provide insight into possible changes in vegetation cover between 1851 and 2023 (Table 1). There are significant differences between the classifications and methods used to make each map, so we focus here on research questions that:
a) relate to at least one specific Key Habitat, and
b) where there is existing research suggesting that the specific pattern investigated is true, and
c) where the differences between the vegetation classifications compared are expected to be smaller than the differences over time. …

Variation In Thermal Tolerance Plasticity And The Costs Of Heat Exposure In The Estuarine Sea Hare, Phyllaplysia Taylori, Richelle L. Tanner, Rauri C. K. Bowie, Cynthia Y. Wang-Claypool, Jonathan H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Climate change is increasing average temperatures and the frequency and intensity of thermal extremes in coastal marine environments. Organisms in coastal marine habitats are accustomed to environmental fluctuations and possess physiological plasticity that may be advantageous in response to increased occurrence of extremes. To examine whether such plasticity is locally adapted to environmental conditions, we investigated the relationship between genetic diversity and thermal tolerance plasticity in 11 populations of the direct-developing intertidal sea hare, Phyllaplysia taylori, on the western coast of the United States. Using whole-organism metrics of muscle function and metabolic rate and a ddRADseq genomic approach, we …

Reviews And Syntheses: Variable Inundation Across Earth’S Terrestrial Ecosystems, James Stegen, Amy J. Burgin, Michelle H. Busch, Joshua B. Fisher, Joshua Ladau, Jenna Abrahamson, Lauren Kinsman-Costello, Li Li, Xingyuan Chen, Thibault Datry, Nate Mcdowell, Corianne Tatariw, Anna Braswell, Jillian M. Deines, Julia A. Guimond, Peter Regler, Kenton Rod, Edward K. P. Bam, Etienne Fluet-Chouinard, Inke Forbrich, Kristin L. Jaeger, Teri O'Meara, Tim Scheibe, Erin Seybold, Jon N. Sweetman, Jianqiu Zheng, Daniel C. Allen, Elizabeth Herndon, Beth A. Middleton, Scott Painter, Kevin Roche, Julianne Scamardo, Ross Vander Vorste, Kristin Boye, Ellen Wohl, Margaret Zimmer, Kelly Hondula, Maggi Laan, Anna Marshall, Kaizad F. Patel

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The structure, function, and dynamics of Earth's terrestrial ecosystems are profoundly influenced by how often (frequency) and how long (duration) they are inundated with water. A diverse array of natural and human-engineered systems experience temporally variable inundation whereby they fluctuate between inundated and non-inundated states. Variable inundation spans extreme events to predictable sub-daily cycles. Variably inundated ecosystems (VIEs) include hillslopes, non-perennial streams, wetlands, floodplains, temporary ponds, tidal systems, storm-impacted coastal zones, and human-engineered systems. VIEs are diverse in terms of inundation regimes, water chemistry and flow velocity, soil and sediment properties, vegetation, and many other properties. The spatial and temporal …

My Art Is Garbage, Beth Shepherd

The Goose

In “My Art is Garbage,” I describe three recent art projects where garbage is both a theme and an artistic medium used to critique the overuse of and inability to reuse or safely dispose of plastics we use every day. The first work, Untitled (Plastic Film Balls), uses non-recyclable single-use household plastic made to form an installation of shimmering balls and alludes to the environmental footprint of the artworld. Plastic Shores, a series of monotype prints, reminds us that plastics in the environment are deleterious to species that we see every day. Finally Plastic Pests, a series …

Offal Wildlife Watching: Connecting Hunters, Wildlife Researchers, And The Public Through Participatory Science, Ellen M. Candler, Grace Milanowski, Amy Rager, Joseph K. Bump

Journal of Extension

Offal Wildlife Watching is a participatory science project that engages deer hunters in wildlife research. The goal of the project is to better understand the ecology of scavenger species that visit deer gut piles across Minnesota. We asked hunters to deploy remote cameras at white-tailed deer gut piles that resulted from their freshly killed deer. Thus far 117 hunters have contributed images and recorded at least 49 different scavenger species. This project is a natural fit in Extension programs and can easily be adapted to other hunted species, biomes, and locations.

Beer And Biology, A Perfect Pairing: Using Beer To Spread Awareness About Invasive Species, Samuel Nutile, Adam Simpson, Sara Stahlman, Lynne E. Beaty

Journal of Extension

Managing the spread of introduced invasive species relies on educating recreationists that currently or potentially harbor such species. By partnering with a local brewery, we developed the Lagers for Lakes Draft Series to facilitate outreach about aquatic invasive species in Erie, Pennsylvania. To date, Lagers for Lakes drafts and associated launch events have reached over 230 individuals and increased awareness of invasive species by 86%. With the materials provided here and the lessons learned from these events, we hope similar outreach efforts can be developed elsewhere to educate and minimize the spread of invasive species.

Field Observations Of Gopher Tortoise (Gopherus Polyphemus) Activity At A Rare Double-Burrow, James Carroll, Rachel Carroll

Georgia Journal of Science

After a review of the journal, it does not appear that abstracts are included with Research Notes. Therefore, no abstract is provided. However, we certainly defer to the Editors on this requirement and will happily provide an abstract if needed.

Lake Powell Fish Sampling: Glen Canyon Dam Forebay Area, 2022 And 2023, Phaedra Budy, Casey Pennock

Browse all Datasets

Native fishes face imperilment due to habitat loss and fragmentation, megadrought, invasive species, and synergies amongst threats. These threats coalesce at Glen Canyon Dam (GCD), which impounds the Colorado River to create Lake Powell, a reservoir inhabited by a suite of nonnative fishes. Water level in Lake Powell has declined precipitously due to water overallocation and megadrought, increasing the risk of nonnative fish entrainment through the dam, as the penstocks draw water from the epilimnion. Our goal was to characterize the distribution and abundance of nonnative fishes in the vicinity of GCD and identify environmental conditions that may increase entrainment. …

Marine Protected Species Identification Guide 2025, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

The Western Australian aquatic environment is home to a number of species that are protected under international agreements and national or state legislation. Many of these species occur in areas where fishing takes place, sometimes resulting in interactions between fishers and protected species. An interaction is considered to be any physical contact between a person, fishing vessel or fishing gear and a protected species, including captures, entanglements and collisions.

This guide has been developed to help you identify some common marine protected species in Western Australia that you may encounter while fishing.

It has been divided into 5 sections:

• …

Climate Influence On Both Spatial And Temporal Patterns Of Rocky Intertidal Community Structure In San Diego, California, Emily Jenkins

Theses

The rocky intertidal ecosystem, the coastal area between high and low tides, serves as a critical buffer between land and sea. This ecosystem supports a diverse array of species and provides rich opportunities for exploration and education. With the influence of climate change, this ecosystem faces significant shifts in species distribution, resilience and recovery from environmental disturbances, as well as habitat loss (Jackson & McIlvenny 2011; Jueterbock et al. 2013; Menge & Gravem 2022; Rilov et al. 2021; Sagarin & Barry 1999). Between 2014-2016, climate anomalies El Niño (ENSO) and the Pacific Decadal Oscillation (PDO) combined to create a period …

The Role Of Anthropogenic Influences On A Tropical Lake Ecosystem And Its Surrounding Catchment: A Case Study Of Lake Sentani, Sulung Nomosatryo, Daniel Lipus, Alexander Bartholomäus, Cynthia Henny, Iwan Ridwansyah, Puguh Sujarta, Sizhong Yang, Dirk Wagner, Jens Kallmeyer

College of Life Sciences Faculty Papers

Lake Sentani is a tropical lake in Indonesia, consisting of four interconnected sub-basins of different water depths. While previous work has highlighted the impact of catchment composition on biogeochemical processes in Lake Sentani, little is currently known about the microbiological characteristics across this unique ecosystem. With recent population growth in this historically rural area, the anthropogenic impact on Lake Sentani and hence its microbial life is also increasing. Therefore, we aimed to explore the influence of environmental and anthropogenic factors on the microbial diversity of Lake Sentani. Here, we present a detailed microbiological evaluation of Lake Sentani, analyzing 49 different …

Reproductive Costs In Female, Island-Dwelling Eastern Diamondback Rattlesnakes (Crotalus Adamanteus), Emily R. Gray

Theses, Dissertations and Capstones

Eastern Diamondback Rattlesnakes (Crotalus adamanteus; EDBs) are a declining species endemic to the Southeastern Coastal Plain. Reproduction is costly for females, which are ovoviviparous, slow to mature, reproduce infrequently, and are often emaciated after parturition. Yet, we have a limited understanding of the trade-offs associated with their reproductive biology. Thus, I had three objectives: 1) assess reproduction-associated water stress and determine how female EDBs respond to altered water budgets in situ (Chapter 1), 2) evaluate the interactive effects of body condition and rainfall on female hydration, with a special focus on musculature as a condition index (Chapter 1), …

Measuring Spatial And Temporal Variation In Species Composition Of Ephemeral Pond Amphibian Assemblages Using Metabarcoding, Elizabeth Strasko

Masters Theses & Specialist Projects

Amphibian populations worldwide face severe threats, heightening the need for reliable monitoring methods. In this thesis, I explored and tested environmental DNA (eDNA) metabarcoding protocols to survey amphibian assemblages in ephemeral ponds of the the Green River Preserve in central Kentucky, USA. First, I evaluated whether the commonly used mitochondrial cytochrome c oxidase subunit I (COI) gene could effectively capture species-level variation in local amphibians for eDNA metabarcoding. Extensive primer design and testing revealed significant challenges in amplifying fragmented eDNA from water samples. In a second study, I applied a metabarcoding approach using the mitochondrial 12S ribosomal RNA (12S) gene …

Investigating Drivers In Phytoplankton Between Lentic And Lotic Ecosystems Within Twelvepole Creek Watershed, Devin Lee Farmer

Theses, Dissertations and Capstones

Harmful Algal Blooms (HABs) threaten aquatic ecosystems, local economies, and water quality. While extensively studied in lakes (lentic systems), their impact on flowing waters (lotic systems) remains underexplored. This study examined algal drivers in both ecosystems within the same watershed, focusing on Beech Fork Lake (lentic) and Twelve Pole Creek (lotic). Key environmental factors, including pH, turbidity, dissolved oxygen, and nutrient levels, were measured using in situ sensors and laboratory analysis. Water samples were analyzed for nitrogen, phosphorus, and algal biomass for comparison to environmental conditions. Phytoplankton was preserved for identification in future research. By comparing these environments, this study …

Ms Environmental Biology Capstone Project, Emily A. Patton

Regis University Student Publications (comprehensive collection)

This is a masters Thesis for MS in Environmental Biology containing four chapters including a literature review, grant proposal, journal manuscript, and stakeholders report on a current environmental issue. (1) Noise Pollution and Avian Communication in Urban Ecosystems: When the Natural World Struggles to Hear Itself. Urban noise masks essential bird vocalizations, which harms avian fitness. Most species are displaced, and those few urban birds which counteract this noise with song adaptations likely experience trade-offs. America's noise policy remains undeveloped, threatening the health of both humans and avian wildlife (2) Application of Noise Barrier Technology for the Restoration of Urban …