Terrestrial and Aquatic Ecology Commons^™

Covid-19: The Spearpoint Of Human–Wildlife Interactions, Terry A. Messmer

Human–Wildlife Interactions

This is the letter from the editor-in-chief.

In The News, Ike Ionel, Jessica Tegt

Human–Wildlife Interactions

Items in the news.

Cover, Editorial Staff, Journal Information

Human–Wildlife Interactions

This includes the cover, editorial staff, and journal information.

Monograph Reduced Box Price: Managing Human–Deer Conflicts

Human–Wildlife Interactions

Order form for HWI monograph, Methods for Managing Human–Deer Conflicts in Urban, Suburban, and Exurban Areas. This monograph identifies challenges and benefits associated with many human–deer conflict mitigation actions as well as methods to monitor the response of deer populations to management actions. Deer exploit urban, suburban, and exurban areas where human populations provide anthropogenic attractants, either intentionally or inadvertently, which often leads to human–deer conflicts. Mitigating actions have varying degrees of efficacy and may not be effective or accepted in every situation. Wildlife and municipal managers must work together to seek methods to reduce attractants, mitigate conflicts, and perpetuate …

Larval Anatomy Of Monotypic Painted Ant Nest Frogs Lithodytes Lineatus Reveals Putative Homoplasies With The Leptodactylus Pentadactylus Group (Anura: Leptodactylidae), Filipe A.C Do Nascimento, Rafael O. De Sá, Paulo C. De A. Garcia

Biology Faculty Publications

The morphological diversity of anuran larvae made them an important source of information for evolutionary and systematic studies. For the monotypic frog genus Lithodytes, which has an interesting taxonomic history, including its past synonymizing with Adenomera and its placement as a subgenus of Leptodactylus, the information provided from its larvae can help to understand its systematics interrelationships and also provide insights about its evolutionary trajectories. Herein, we provide a detailed description of the larval morphology of Lithodytes lineatus, including novel data of internal morphology (buccopharyngeal cavity and skeleton), and discuss some morphological and evolutionary aspects in relation …

The Relationships Between Spawning Horseshoe Crabs And Egg Densities: Recommendations For The Assessment Of Populations And Habitat Suitability, Mark L. Botton Phd, Christina P. Colon Phd, Matthew Sclafani Phd, Robert E. Loveland Phd, Susan Elbin Phd, Kaitlyn Parkins

Publications and Research

1. Horseshoe crab population sizes and trends have been previously studied using surveys of spawning adults and counts of eggs from surface (top 5 cm) and deep (20 cm) sediment samples. The correlations between surface and deep eggs were studied at two locations, Delaware Bay and Jamaica Bay, USA, and the correlations between egg densities and spawning counts were examined in Jamaica Bay. 2. There were significantly higher densities of eggs in deep sediments than in surface sediments. Only about 10% of the variability in surface egg density was explained by deep egg density. The numerical patterns between surface and …

Connectivity: Insights From The U.S. Long Term Ecological Research Network, David M. Iwaniec, Michael Gooseff, Katharine N. Suding, David Samuel Johnson, Daniel C. Reed, Debra P. C. Peters, Byron Adams, John E. Barrett, Brandon T. Bestelmeyer, Max C. N. Castorani, Elizabeth M. Cook, Melissa J. Davidson, Peter M. Groffman, Niall P. Hanan, Laura F. Huenneke, Pieter T. J. Johnson, Diane M. Mcknight, Robert J. Miller, Gregory S. Okin, Daniel L. Preston, Andrew Rassweiler, Chris Ray, Osvaldo E. Sala, Robert L. Schooley, Timothy Seastedt, Marko J. Spasojevic, Enrique R. Vivoni

Advanced Science Research Center

Ecosystems across the United States are changing in complex and surprising ways. Ongoing demand for critical ecosystem services requires an understanding of the populations and communities in these ecosystems in the future. This paper represents a synthesis effort of the U.S. National Science Foundation-funded Long-Term Ecological Research (LTER) network addressing the core research area of “populations and communities.” The objective of this effort was to show the importance of long-term data collection and experiments for addressing the hardest questions in scientific ecology that have significant implications for environmental policy and management. Each LTER site developed at least one compelling case …

Small Unmanned Aircraft Systems Acoustic Analysis For Noninvasive Marine Mammal Response: An Exploratory Field Study, David Thirtyacre, Gennifer Brookshire, Sarah Callan, Brittany Arvizu, Patrick Sherman

International Journal of Aviation, Aeronautics, and Aerospace

As in countless other fields of human endeavor, small unmanned aircraft systems (sUAS) have the potential to benefit pinniped (Pinnipedia; e.g., Phocidae [seals], Otariidae [sea lions], and Odobenidae [walruses]) response efforts. The employment of sUAS could give responders a close-up look at animals in distress in order to determine their condition as well as develop a response strategy. However, unlike other subjects that are regularly inspected by sUAS (e.g., croplands and civil infrastructure) pinnipeds may respond to the distinctive sound generated by small, multirotor sUAS. This reaction may include retreating into the water en masse, which could put …

Salad With Clams: Prey Choice Of An Intentionally Carnivorous Turtle, Kayleigh R. Erazmus, Luca Luiselli, Russell L. Burke

Biology Faculty Publications

Prey choice is the non-random foraging and consumption of prey species by their predators, and is therefore the basis for studies of topics as diverse as quantifying food webs, predator–prey relationships, and optimal-foraging models. Malaclemys terrapin (Diamond-back Terrapin) is a diet generalist with a large geographic distribution: the US Atlantic and Gulf coasts from Massachusetts to Texas. Individual terrapins have relatively small home ranges and feed primarily on local mollusc species. In feeding trials with 1 prey species and 2 prey species, wild-caught terrapins from New York readily consumed Mya arenaria (Soft-shelled Clam) and Geukensia demissa (Atlantic Ribbed Mussel), preferring …

Successional Changes In Carbon Storage Are Sustained In A Temperate Forest Across Different Initiating Disturbances, Cameron Clay

Theses and Dissertations

Managing forests for carbon (C) sequestration requires an understanding of how disturbance history shapes C pools and fluxes over successional time. At the University of Michigan Biological Station, we examined how two stand establishing disturbances influenced C pools and fluxes over 100+ years of succession, comparing these secondary forests with “legacy” late-successional stands encompassing ages and compositions that would be present in the absence of region-wide stand-replacing disturbance. Our work utilized measurements taken between 2014 and 2020 from separate experimental forest chronosequences initiated following clear-cut harvesting only or clear-cut harvesting and fire, along with three >130-yr-old late successional stands comprising …

The Mechanisms And Consequences Of Shrub Encroachment On The Virginia Barrier Islands, Lauren K. Wood

Theses and Dissertations

Shrub encroachment is a global phenomenon driven by direct and indirect anthropogenic influence which alters plant communities and ecosystem function. Many studies have investigated drivers and consequences of woody plant establishment, but mesic landscapes are underrepresented in the literature. My objective was to assess the mechanisms of Morella cerifera encroachment into coastal mesic grassland, the potential for self-reinforcement, and consequences on community composition, nutrients, and landscape productivity. I studied temperature and water microclimate modification by Morella cerifera presence and removal to understand ecosystem engineering and community composition changes. Additionally, I examined the influence of shrubs on surrounding grassland species traits …

A Kernel-Based Change Detection Method To Map Shifts In Phytoplankton Communities Measured By Flow Cytometry, Corinne Jones, Sophie Clayton, François Ribalet, E. Virginia Armbrust, Zaid Harchaoui

OES Faculty Publications

1. Automated, ship-board flow cytometers provide high-resolution maps of phytoplankton composition over large swaths of the world's oceans. They therefore pave the way for understanding how environmental conditions shape community structure. Identification of community changes along a cruise transect commonly segments the data into distinct regions. However, existing segmentation methods are generally not applicable to flow cytometry data, as these data are recorded as ‘point cloud’ data, with hundreds or thousands of particles measured during each time interval. Moreover, nonparametric segmentation methods that do not rely on prior knowledge of the number of species are desirable to map community shifts. …

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson

OES Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group's growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …

Water Clarity At The River-Estuary Transition Zone: A Comparative Study Of The James, Mattaponi, And Pamunkey Sub-Estuaries, Rachel Henderson

Theses and Dissertations

Water clarity is a key parameter for monitoring water quality and often used to assess habitat suitability for submerged aquatic vegetation (SAV). Light attenuation, a measure of water clarity, is impacted by colored dissolved organic matter (CDOM), and by suspended particulates which include living and non-living components. We anticipated that the relative importance of these factors in regulating light attenuation would vary among the upper portions of three sub-estuaries differing in morphometry, hydrology, and degree of human influence. The James is characterized by eutrophic conditions and high algal abundance, whereas the Mattaponi and Pamunkey exhibit lower phytoplankton production. The Mattaponi …

A Spatiotemporal Assessment Of Fish Assemblage Response To Land-Use Change And The Evaluation Of Edna Metabarcoding For Describing Diverse Fish Communities, Timothy M. Owen

Theses and Dissertations

Fish assemblages are often assessed as a biological proxy for environmental health. While humans value healthy environments for the ecosystem services and recreational opportunities they provide, it is increasingly evident that such resources can be paradoxically degraded by anthropogenic activities. In this investigation, we studied the relationship between different intensities of anthropogenic land-use change and habitat-driven fish assemblage response across multiple spatiotemporal scales. Secondarily, we explored the efficacy of eDNA metabarcoding against conventional electrofishing techniques for the purpose of describing complete fish communities. This study was conducted in the Tuckahoe Creek basin near Richmond, Virginia. This James River tributary serves …

Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor

OES Faculty Publications

A suite of lipid biomarkers plus compound-specific carbon isotopes of major sterols were determined in muscle tissues across increasing sizes of northern Neptune whelks Neptunea heros, developing eggs and potential diets to link trophic patterns, metabolism and carbon sources on the Chukchi Sea shelf. Analysis of primary prey included the northern clam Astarte borealis, water column particulate organic matter (POM) and surface sediments near the collection sites. Sterols specific to major algal groups along with algal-derived polyunsaturated fatty acids (C20:5n-3, C20:4n-3, C22:6n-3) in whelk muscle tissue reflected the importance of algal primary production to benthic consumers and its …

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

Large-Scale Variation In Wave Attenuation Of Oyster Reef Living Shorelines And The Influence Of Inundation Duration, Rebecca L. Morris, Megan K. La Peyre, Bret M. Webb, Danielle A. Marshall, Donna M. Bilkovic, Just Cebrian, Giovanna Mcclenachan, Kelly M. Kibler, Linda J. Walters, David Bushek, Eric L. Sparks, Nigel A. Temple, Joshua Moody, Kory Angstadt, Joshua Goff, Maura Boswell, Paul Sacks, Stephen E. Swearer

Civil & Environmental Engineering Faculty Publications

One of the paramount goals of oyster reef living shorelines is to achieve sustained and adaptive coastal protection, which requires meeting ecological (i.e., develop a self-sustaining oyster population) and engineering (i.e., provide coastal defense) targets. In a large-scale comparison along the Atlantic and Gulf coasts of the United States, the efficacy of various designs of oyster reef living shorelines at providing wave attenuation was evaluated accounting for the ecological limitations of oysters with regards to inundation duration. A critical threshold for intertidal oyster reef establishment is 50% inundation duration. Living shorelines that spent less than half of the time ( …

Assessing Habitat Suitability Of Ribbed Mussels (Geukensia Demissa) In Georgia Salt Marshes By Examining Predicted Mussel Densities And Mussel Population Parameters, William K. Annis Jr

College of Graduate Studies: Theses & Dissertations

Geukensia demissa (ribbed mussel) is an ecology important bivalve that has the potential to contribute to salt marsh restoration. Understanding the factors that contribute to the distribution of mussels can help inform managers on choosing locations to optimize the survivorship of mussels in restoration projects. This study sought to model mussel densities across the coast of Georgia and to compare predicted mussel densities with mussel population parameters as means to gauge habitat suitability. Mussel densities were collected through field surveys across a range of salt marshes along the coast of Georgia and were compared with spatial data such as distance …

Environmental Gradients And Physical Barriers Drive The Basin-Wide Spatial Structuring Of Mediterranean Sea And Adjacent Eastern Atlantic Ocean Prokaryotic Communities, Marta Sebastián, Eva Ortega-Retuerta, Laura Gómez-Consarnau, Marina Zamanillo, Marta Álvarez, Javier Arístegui, Josep M. Gasol

Research outputs 2014 to 2021

The Mediterranean Sea is a miniature ocean divided by the Sicily Strait into two basins with a marked west to east trophic gradient and separated of the nearby eastern Atlantic Ocean by the Strait of Gibraltar. Here, we test the hypothesis that these physical and environmental barriers favor the development of specific prokaryotic assemblages, leading to changes in community structure both in the vertical and horizontal spatial scales. By analyzing taxonomic and phylogenetic diversity using amplicon sequence variants (ASVs) of the 16S rRNA gene, we show that there is indeed marked vertical segregation of prokaryotic groups, similar to that found …

Persistence Of Biogeochemical Alterations Of Deep-Sea Sediments By Bottom Trawling, S. Paradis, M. Goñi, Pere Masqué, R. Durán, M. Arjona-Camas, A. Palanques, P. Puig

Research outputs 2014 to 2021

Bottom trawling grounds have been expanding to deeper areas of the oceans since the mid-XXth century, and mitigating strategies aimed to protect fish stocks, such as temporal trawling closures, have recently been implemented. Here we investigated the biogeochemical properties of sediment from a deep-sea trawling ground in Palamós Canyon (NW Mediterranean) to assess the effects of a 2-months trawling closure in the recovery of sedimentary organic matter. In comparison to untrawled areas, the continuous erosion and sediment mixing in trawling grounds led to coarser reworked sediments impoverished in organic carbon (∼30% loss) and promoted the degradation of labile compounds (52–70% …

The Role Of Aerodynamic Resistance In Thermal Remote Sensing-Based Evapotranspiration Models, Ivonne Trebs, Kaniska Mallick, Nishan Bhattarai, Mauro Sulis, Jamie Cleverly, William Woodgate, Richard Silberstein, Nina Hinko-Najera, Jason Beringer, Wayne S. Meyer, Zhongbo Su, Gilles Boulet

Research outputs 2014 to 2021

Aerodynamic resistance (hereafter ra) is a preeminent variable in evapotranspiration (ET) modelling. The accurate quantification of ra plays a pivotal role in determining the performance and consistency of thermal remote sensing-based surface energy balance (SEB) models for estimating ET at local to regional scales. Atmospheric stability links ra with land surface temperature (LST) and the representation of their interactions in the SEB models determines the accuracy of ET estimates. The present study investigates the influence of ra and its relation to LST uncertainties on the performance of three structurally different SEB models. It used data from nine Australian OzFlux eddy …

Population Genetics Of A Reintroduced Fisher (Pekania Pennanti) Population In West Virginia, Caroline E. Harms

Graduate Theses, Dissertations, and Problem Reports (ETD)

Fishers (Pekania pennanti) were reintroduced in West Virginia in 1969 with no population wide genetic analysis ever having been conducted. Genetic analysis of reintroduced populations is vital to assess genetic diversity as an indicative of population viability. My objective was to collect fisher samples throughout West Virginia, nearby states where fisher may be migrating (PA and NY), and the New Hampshire source population to provide a full genetic interpretation of the reintroduced West Virginia population. Genetic analysis was used to measure genetic diversity, admixture or delineation of subpopulations, and effective population size. Sample location and genetic data were …

Unconventional Gas Pipeline Right-Of-Way Influence On Wildlife, Samuel C. Knopka

Graduate Theses, Dissertations, and Problem Reports (ETD)

The development of horizontal drilling for natural gas in the Marcellus Shale in 2004 resulted in rapid exploitation of the play in the Appalachian Basin. This “unconventional” gas well drilling accesses resources deeper beneath the surface and allows for multiple wells to be co-located on a single well pad. This results in fewer, but larger, well pads on the landscape than traditional vertical wells. Pipelines are required to transport the volumes of gas produced by unconventional wells to production facilities and market. The effects of gathering pipelines, which transport gas from well pads to larger transport pipelines, are poorly studied …

Age, Growth, And Mortality Of Atlantic Tripletail In The North-Central Gulf Of Mexico, Amanda E. Jefferson, Matthew B. Jargowsky, Meagan N. Schrandt, Pearce T. Cooper, Sean P. Powers, John Dindo, J. Marcus Drymon

University Faculty and Staff Publications

In the southeastern USA and the Gulf of Mexico (GOM), Atlantic Tripletail Lobotes surinamensis are increasingly targeted by recreational anglers, indicating that stock status should be assessed. A critical need for such assessments is age-specific data; however, previous studies have drawn conflicting conclusions regarding the most appropriate structure for aging. Moreover, growth parameters and mortality rates for GOM Atlantic Tripletail are unknown. Therefore, the goals of this study were to (1) evaluate sagittal otoliths and first dorsal spines as aging structures; (2) model combined and sex-specific growth; and (3) estimate mortality rates for GOM Atlantic Tripletail. From 2012 to 2019, …

Documentation Of Atlantic Tarpon (Megalops Atlanticus) Space Use And Move Persistence In The Northern Gulf Of Mexico Facilitated By Angler Advocates, J. Marcus Drymon, Matthew B. Jargowsky, Michael A. Dance, Mitchell Lovell, Crystal L. Hightower, Amanda E. Jefferson, Andrea M. Kroetz, Sean P. Powers

University Faculty and Staff Publications

Atlantic tarpon (Megalops atlanticus, hereafter tarpon) are facing a multitude of stressors and are considered Vulnerable by the IUCN; however, significant gaps remain in our understanding of tarpon space use and movement. From 2018 to 2019, citizen scientists facilitated tagging of 23 tarpon with SPOT tags to examine space use and movement across the northern Gulf of Mexico. Movement-based kernel densities were used to estimate simplified biased random bridge-based utilization distributions and a joint move persistence model was used to estimate a behavioral index for each fish. Tarpon showed consistent east–west movement from the Alabama/Florida border to Louisiana, and utilization …

Diets Of Double-Crested Cormorants In The Lake Winnebago System, Wisconsin, Ryan P. Koenigs, Daniel J. Dembkowski, Charles D. Lovell, Daniel A. Isermann, Adam D. Nickel

United States Department of Agriculture Wildlife Services: Staff Publications

Double-crested cormorant Phalacrocorox auritus Lesson (cormorant) populations have increased throughout the Great Lakes region of North America causing concern related to the impact of cormorant predation on fish communities. A recent decline in yellow perch Perca flavescens (Mitchill) abundance within the Lake Winnebago System, Wisconsin, USA, prompted an assessment of cormorant diets to evaluate potential effects of cormorant predation on the sportfish community. Diets were collected from 883 cormorants (417 from Lake Winnebago and 466 from Lake Butte des Morts) between 2015 and 2017. Cormorant diets on both waterbodies consisted mostly of freshwater drum Aplodinotus grunniens Rafinesque and gizzard shad …

Jaguars And Pumas Exhibit Distinct Spatiotemporal Responses To Human Disturbances In Colombia’S Most Imperiled Ecoregion, Joe J. Figel, Sebastián Botero-Cañola, Juan David Sánchez-Londoño, Javier Racero-Casarrubia

University of Nebraska State Museum: Mammalogy Papers

Abstract

Coexistence of sympatric felids is facilitated by mutual avoidance and the partitioning of habitats, prey, and time. Anthropogenic disturbances disrupt this coexistence in fragmented landscapes, potentially triggering cascading influences in ecological communities. We used photographic data from 8,717 trap nights (November 2014–June 2016) at 87 camera trap sites in Colombia’s middle Magdalena River basin to compare spatiotemporal overlap among jaguars (Panthera onca), pumas (Puma concolor), their prey, and humans, at sites of high and low disturbance, as determined by the human influence index. Human disturbance events (e.g. domestic dogs, livestock, and humans, including armed hunters) …

Evidence On The Effectiveness Of Small Unmanned Aircraft Systems (Suas) As A Survey Tool For North American Terrestrial, Vertebrate Animals: A Systematic Map Protocol, Jared A. Elmore, Michael F. Curran, Kristine O. Evans, Sathishkumar Samiappan, Meilun Zhou, Morgan B. Pfeiffer, Bradley F. Blackwell, Raymond B. Iglay

United States Department of Agriculture Wildlife Services: Staff Publications

Background: Small unmanned aircraft systems (sUAS) are replacing or supplementing manned aircraft and groundbased surveys in many animal monitoring situations due to better coverage at finer spatial and temporal resolutions, access, cost, bias, impacts, safety, efficiency, and logistical benefits. Various sUAS models and sensors are available with varying features and usefulness depending on survey goals. However, justification for selection of sUAS and sensors are not typically offered in published literature and existing reviews do not adequately cover past and current sUAS applications for animal monitoring nor their associated sUAS model and sensor technologies, taxonomic and geographic scope, flight conditions and …

Recolonizing Carnivores: Is Cougar Predation Behaviorally Mediated By Bears?, Kristin N. Engebretsen, Jon P. Beckmann, Carl W. Lackey, Alyson M. Andreasen, Cody Schroeder, Pat Jackson, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Conservation and management efforts have resulted in population increases and range expansions for some apex predators, potentially changing trophic cascades and foraging behavior. Changes in sympatric carnivore and dominant scavenger populations provide opportunities to assess how carnivores affect one another. Cougars (Puma concolor) were the apex predator in the Great Basin of Nevada, USA, for over 80 years. Black bears (Ursus americanus) have recently recolonized the area and are known to heavily scavenge on cougar kills. To evaluate the impacts of sympatric, recolonizing bears on cougar foraging behavior in the Great Basin, we investigated kill sites of 31 cougars between …