Engineering Commons^™

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage

Computer Science Faculty Publications

Structured Illumination Microscopy (SIM) enables super-resolution imaging by encoding high-frequency spatial information through patterned light. While traditional Fourier-based reconstruction methods are prone to artifacts under suboptimal conditions, recent deep learning approaches often require large training datasets and lack adaptability across different imaging setups. In this work, we present Position Encoded Multi-Layer Perceptron (PEM) network that leverages implicit neural representations (INRs) and SIM forward-model-driven modeling to reconstruct super-resolved images without any training data. PEM-SIM represents each spatial coordinate as a combination of sinusoidal functions across multiple frequencies, enabling rich encoding of fine spatial detail. A forward model grounded in SIM image …

Adaptive Self-Attention For Enhanced Segmentation Of Adult Gliomas In Multi-Modal Mri, Evan P. Savaria, Jiangwen Sun

Computer Science Faculty Publications

Every year there are an estimated 80,000–90,000 new glioma cases, highlighting the need for reliable imaging-based decision support. Although deep learning has improved tumor sub-region segmentation, many state-of-the-art models fail to fully capture complementary information across T1, T1Gd, T2, and FLAIR MRI modalities and often operate as “black boxes,” limiting physician trust when precise delineation is critical for surgical planning, radiation targeting, and treatment monitoring. To address these limitations, we propose AIMS, an Adaptive Integrated Multi-Modal Segmentation framework that maintains modality-specific feature streams and employs adaptive self-attention within a hierarchical CNN-Transformer architecture to prioritize and fuse multi-modal MRI features. We …

Application Paths Of Semantic Modeling In Financial Fraud Detection And Risk Identification, Victor P. Gauthier, Daniel S. Wu

Computer Science Faculty Publications

Financial fraud and risk pose significant threats to economic stability and individual well-being. Traditional detection methods often struggle to keep pace with increasingly sophisticated fraudulent schemes. Semantic modeling, which focuses on understanding the meaning and relationships within data, offers a promising avenue for enhancing fraud detection and risk identification. This review paper explores the application paths of semantic modeling in this domain. We begin with a historical overview of fraud detection techniques, highlighting the limitations of traditional approaches. Subsequently, we delve into core themes, including knowledge graph-based fraud detection and semantic rule-based inference for risk assessment. We then compare and …

Viability Of Widely Used Encryption Schemes In Drone Transmission, Emanuel Yasir Nelson

Cybersecurity Undergraduate Research Showcase

This paper presents throughout research on the security issues related to drone transmission. These topics were addressed and explained, in particular the aspects relating to cybersecurity, for utmost clarity. These include threats and vulnerabilities, drone transmission the impact of encryption on latency, and the details of the encryption methods AES-128, AES-256, and ChaCha20 that were used in the experiment described in the paper. Each encryption method performance was measured and outputted by the Python code developed and used in the experiment. Afterwards, the performance of each method was analyzed in relation to their decryption time, encryption time, end to end …

A Transition Framework For Hybrid Tls In Enterprise-Level Systems, William Hadd

Cybersecurity Undergraduate Research Showcase

Enterprises face an immediate need to protect long-lived data against harvest-now, decrypt-later threats while maintaining interoperability across layered systems. With NIST’s first post-quantum standards finalized (ML-KEM, ML-DSA, SLH-DSA) and TLS hybridization drafts defining concrete ECDHE + ML-KEM groups, adoption can begin at the TLS termination layer even before full ecosystem support for post-quantum signatures arrives (NIST, 2024; IETF, 2025). In this paper, we propose an enterprise-oriented transition framework and maturity model for hybrid TLS across email, internal API gateways, and object storage. We specify where to enforce, which hybrid groups to select, and how to prevent silent downgrade with policy …

On The Scalability Of Anisotropic Mesh Adaptation On Distributed And Shared Memory Architectures For Numerical Approximations, Kevin Mark Garner Jr.

Computer Science Theses & Dissertations

Mesh generation is a critical component in numerical approximations of Partial Differential Equations (PDEs). One such example includes Computational Fluid Dynamics (CFD), as CFD simulations in turn are crucial for applications in many industries, such as personalized healthcare and the design of aerospace vehicles. Generating high quality meshes for large-scale CFD problems presents a significant bottleneck in the CFD workflow. This dissertation proposes “fast,” parallel 3D mesh generation methodologies that are designed to leverage the concurrency offered by emerging High-Performance Computing (HPC) architectures. First, a distributed memory method is presented that integrates a sequential state-of-the-art isotropic, advancing front local reconnection-based …

Machine Learning For Anomaly Detection In Neural Network Security And Srf Cavities, Hal Ferguson

Electrical & Computer Engineering Theses & Dissertations

This dissertation explores the development and deployment of machine learning approaches to address critical challenges in anomaly detection across two distinct domains: neural network security in federated learning settings and cavity behavior analysis in particle accelerator operations at Jefferson Lab in Newport News, Virginia. Anomaly detection identifies deviations from expected patterns, safeguarding systems in cybersecurity, industry, and research against malicious activities and failures. This dissertation demonstrates how our machine learning approaches enhance detection accuracy and efficiency in both neural network security and industrial applications.

First, we investigate vulnerabilities in deep neural networks deployed in federated learning. Although federated learning preserves …

Development Of A Handy Tool For The Selection Of Urban Stormwater Best Management Practices, Aaron T. Kenny

Civil & Environmental Engineering Theses & Dissertations

The City of Norfolk, Virginia faces substantial stormwater management challenges due to shallow groundwater, tidal influence, dense urban development, and limited right-of-way. These constraints limit the applicability of many Best Management Practices (BMPs) and require the early identification of feasible practices before detailed hydrologic modeling. This thesis introduces a decision-support tool that quickly and systematically identifies and prioritizes BMPs that are both feasible and well-suited to Norfolk’s Municipal Separate Storm Sewer System (MS4) program, streamlining early-stage selection and saving time and resources.

The tool implements a two-stage methodology. First, feasibility gates are applied using catalog attributes derived from the Virginia …

Bridging The Gap Between Network Science And Network Systems To Identify And Mitigate Cyber Risk: Identify And Mitigate Backdoor Attacks On Graph Neural Networks And On Complex Systems, Sabah Ettahri

Electrical & Computer Engineering Projects for D. Eng. Degree

This doctoral project aims to bridge the gap between graph theory and network science to identify and mitigate cyber risk, represented as a CY-Triangular Network that connects different networks. The CY-Triangular Framework is a cybersecurity system that integrates graph theory and network science through an interoperable learning approach. The objective of this project is to bridge the gap between two domains: network science and network systems. Accordingly, it examines one representative network from each field, focuses on a complex system network, and explores Graph Neural Networks (GNNs). The connection between these domains lies in graph theory. This research demonstrates that …

Flood-Level Estimation Using Aerial Imagery, Yisen Zhang

Electrical & Computer Engineering Projects for D. Eng. Degree

Reliable flood-level estimation using aerial UAV (Unmanned aerial vehicle) imagery is essential for effective post-disaster assessment and rapid emergency response. This study utilizes a UAV-based dataset, referred to as the UVA dataset, which integrates multiple public datasets and manually labeled UAV images, together with a multi-stage vehicle-centric framework for flood-depth estimation. The UVA dataset integrates images from multiple public sources, including Unmanned Drone Water Assessment (UDWA), Unmanned Aerial Vehicle Detection and Tracking (UAVDT), Car Parking Lot (CARPK), and additional UAV-view images collected from the internet, followed by manual annotation for water depth, viewing angle, and altitude labels. In the proposed …

Design And Assessment Of A Single-Blade Rotary Wing For Use In Vertical Takeoff And Landing (Vtol) Aircraft, William C. Mcmasters

Mechanical & Aerospace Engineering Theses & Dissertations

A single-bladed propeller was designed to determine its efficacy in increasing efficiency of quadplane aircraft in the cruise configuration while still providing sufficient vertical lift for the vertical takeoff portion of flight. Aerodynamic theory predicts higher efficiency for single-blade propellers, resulting in a lower power requirement. A counter-weighted single-blade was modeled after a 10x5 model aircraft propeller used in small unmanned vehicles with a steel counterweight to balance centrifugal forces. The propeller was tested in the ODU wind tunnel to determine performance at various Advance Ratios (J). The research suggests that single-blade propellers show comparable performance compared to two-bladed propellers …

Human Identification And Action Recognition Using Small Data And Deep Domain Adaptation, Alexander M. Glandon

Electrical & Computer Engineering Theses & Dissertations

Human identification and human action recognition problems are two important research areas for real-world security and surveillance applications. In both human identification and action recognition, it is necessary to operate by collecting small datasets in the field, possibly in a short time window of observation. This dissertation studies and develops computational modeling and high-performance machine learning (ML) and deep learning (DL) models for human identification and human action recognition using small amounts of data. These methods and computational models may be useful for different security and surveillance applications.

This dissertation on human recognition develops a ML computational model to estimate …

Comparative Analysis Of Emergent Behaviors Of Three Drone Swarm System Models For Targeting Using Agent-Based Modeling And Simulation, Arsenio T. Gumahad Ii

Engineering Management & Systems Engineering Theses & Dissertations

This dissertation introduces a novel computational simulation framework for evaluating the emergent behaviors of three swarm drone models using Agent-Based Modeling and Simulation (ABMS). The three swarm models are a Leader-Follower swarm model based on Bruckstein's antline theory, a Flocking model based on a simplified Reynolds 'Boids’ model, and a Stigmergic model with pheromone-based coordination. The primary objective of the simulation is to evaluate the performance of these models in delivering a user-defined number of drones of each type to a target area of interest in four separate scenarios, resulting in 50,000 separate simulation trials. Each scenario was structured to …

Investigation Of Laser Based Flow Diagnostics With Metastable Argon, Sterling S. Gordon

Physics Theses & Dissertations

The overarching motivation of this work is the development of seedless, non-intrusive, laser-based diagnostics for supersonic airflow in wind tunnels. To advance this goal, this dissertation fo-cuses on three-photon excitation in a research-grade argon beam within a tabletop vacuum system, which offers a controlled environment for testing and refining the approach. The chosen excitation scheme drives argon atoms to the 3d[5/2]₃ state using a pulsed Ti:Sapphire laser system, enabling time-of-flight (ToF) measurements on atoms that subsequently undergo a multi-step decay to the metastable 4s[3/2]₂ state. Although full realization of this excitation scheme was hindered by technical …

Component Model Development Of Heat Exchangers, Expanders, And Control Valves For Autonomous Cryogenics Plant Cool-Down, William Harris Buhrig Iv

Mechanical & Aerospace Engineering Theses & Dissertations

The traditional method of cryogenic plant cool-down involves having continuous on-call staff to head into the office at any time to modify the existing multi-layered PID control systems if the on-call staff member detects a significant deviation from the cool-down plan. This thesis aims to outline an effective method for modeling the structure of systems with performance characteristics that deviate from design requirements and from ideal inlet-outlet correspondence, enabling the adjustment and modification of existing control structures across all Thomas Jefferson National Accelerator Facility (JLab) cryogenic refrigeration plants. Analytical Modeling and Gaussian Process Regression (GPR) are applied to model the …

Dissociation Of Subjective And Objective Measures Of Trust In Vehicle Automation: A Driving Simulator Study, Samuel Petkac, Tetsuya Sato, Kun Xie, Yusuke Yamani

Psychology Faculty Publications

Trust is a crucial factor that influences human-automation interaction in surface transportation. Previous research indicates that participants tend to display higher levels of subjective trust toward lower-level automated systems compared to high-level automated systems. However, administering subjective trust measures via questionnaires can interfere with primary task performance, limiting researchers' ability to measure trust continuously in a real-world manner. In the current driving simulator study, 25 drivers using an advanced driving system (ADS) were randomly assigned to either an active (L2) or passive (L3) automated driving condition. Participants experienced eight near-miss driving scenarios with or without obstructions in a distributed driving …

Novel Percutaneous Repair Of Femoral Pseudoaneurysms Using Perclose Proglide™: A Case Series, Ryan Mancoll, Emily Burnett, Nicholas Bandy, Benjamin Samberg, Thomas Cook, Jacob Hoffman, Christopher Murter, Matthew Rossi, David Dexter, Hosam El Sayed, Animesh Rathore Md

Cardiovascular Research Symposium

BACKGROUND - This case series details the novel use of the Perclose ProGlide closure device to successfully repair three separate cases of iatrogenic femoral pseudoaneurysms (PSAs) without attempting other modalities first. Conventional treatment methods of ultrasound-guided compression, duplex-directed thrombin injection (DDTI), or open surgical repair were contraindicated in these patients due to unique anatomy or advanced comorbidities.

METHODS – Details were gathered via a retrospective chart review.

RESULTS - In the first case, a 73-year-old female had an access site PSA off the superficial femoral artery (SFA) with concomitant arteriovenous fistula (AVF) and advanced cardiac disease. The ProGlide device was …

Complex System Governance And Cyber Operations, Willie Gernard Mccallister

Engineering Management & Systems Engineering Theses & Dissertations

This dissertation examines the potential integration of Complex System Governance (CSG) within cybersecurity, emphasizing the development of a reference model for Cybersecurity Infrastructures. Traditional strategies for securing digital environments have struggled to address the intricate and dynamic layers inherent in modern cybersecurity systems. The purpose of this research is to explore the applicability of CSG as a framework to assess cybersecurity infrastructure using a case study research design. The research addresses two key questions: (1) How can the CSG reference model be adapted to explore cybersecurity infrastructure? (2) What results from CSG based exploration of cybersecurity infrastructure through a case …

Enhancing The Design Of Strained Superlattice Gallium Arsenide Based Photocathodes With Distributed Bragg Reflector, Adam D. A. Masters

Electrical & Computer Engineering Theses & Dissertations

Particle accelerators play a crucial role in our understanding of matter and the universe and have numerous practical applications in various fields. These devices enable scientists to examine the smallest components of matter, study the forces that govern their interactions, and probe conditions from the early universe. Moreover, accelerators are valuable in medicine, industry, and research, enhancing imaging methods, cancer therapies, and manufacturing techniques. As the experiments conducted at these facilities evolve and require higher precision, improved particle sources must continue to advance to keep up with their requirements. To do that, we enhanced the design of spin polarized electron …

Input Structure Based Optimization For Privacy Preserving Ai Systems, Feng Yizhou

Electrical & Computer Engineering Theses & Dissertations

As Artificial Intelligence (AI) systems become increasingly integrated into critical domains, ensuring privacy-preserving model design and system deployment has become a pressing priority. Safeguarding both sensitive user data and proprietary model parameters is critical throughout the AI model and system, from data acquisition and pre-processing to model inference and deployment. However, existing privacy-preserving frameworks face several limitations, including fragmented data ownership, incomplete protection across system stages, substantial computational overhead, and poor scalability to modern architectures such as large language models. This dissertation explores a unifying optimization strategy centered on input structure design to address these challenges. The core idea is …

Effect Of Moderate Decrease In Contractility On Epithelial Cell-Cell Contacts Under External Stretch, Saika Sharmin

Mechanical & Aerospace Engineering Theses & Dissertations

Epithelial tissues are characterized by extensive cell–cell contacts and often subject to stretch during normal function. Cell-cell contact adhesion strength maintains mechanical continuity from cell to cell. Mechanical forces exerted by cells via actomyosin contractility are known to strengthen cell-cell adhesions to a certain extent. While it is known that a large decrease in contractility causes cell-cell contact rupture due to weakened adhesions, it is unclear how a moderate reduction in contractility affects cell-cell junction stability. Here, we studied how a moderate inhibition of non-muscle myosin II (NMII) affects the integrity of epithelial cell-cell contacts, especially when subject to the …

A Methodology For Model-Based Certification, Jay Albert Silverman

Engineering Management & Systems Engineering Theses & Dissertations

A need for a single source of knowledge for design decisions has led to the development of a new field of systems engineering, model-based systems engineering (MBSE) (Delligati, 2014). System certification is defined as affirming that regulatory requirements for a system have been met (Goodwin & Juzaitis, 2006). System certification is a specific application of system validation. System verification can be defined as ensuring that the system of interest (SOI), as designed, is in accordance with the design inputs/requirements. System validation can be defined as ensuring that the SOI, as designed, meets the defined system needs (Wolfgand, Katz, & Wheatcraft, …

Valorizing Cement Kiln Dust And Glass Powder: A Binder Study On Sustainable Partial Cement Replacement, Sai Kiran Simhadri

Civil & Environmental Engineering Theses & Dissertations

The production of cement ranks as a major source of global CO₂ emissions because of the high energy requirements needed to create clinker. The construction industry is actively seeking ways to reduce its carbon footprint. Utilizing industrial waste materials to partially replace cement can lower emissions. This research evaluates a ternary binder system which uses Cement Kiln Dust (CKD) and Glass Powder (GP) to replace a portion of Type IL (Portland Limestone) cement. The mixes were made with a fixed water-to-binder ratio of 0.44 and contained 15% GP by mass while the CKD content ranged from 0% to 10%. The …

Human Activity Recognition And Identification Driven Automated Deep Learning For Time-Series Classification, Justin Alan Gamble

Engineering Management & Systems Engineering Theses & Dissertations

The growing emphasis on Digital Engineering (DE) within the U.S. Department of Defense (DoD) demands advanced methods for leveraging vast time-series data generated by sensor-rich environments. Deep learning models offer promising solutions for complex timeseries classification tasks, however their design and optimization remain highly resource intensive, requiring specialized expertise. This dissertation addresses this challenge by developing and evaluating an Automated Machine Learning (AutoML) framework specifically tailored for the time-series classification task of Human Activity Recognition and Identification (HARI).

A systematic investigation was conducted using the Design Science Research Methodology (DSRM) comparing traditional search strategies of grid search and random search …

Computational Modeling For Automatic Superconducting Cavity Fault Prediction And Classification Using Time Series Signals, Md Monibor Rahman

Electrical & Computer Engineering Theses & Dissertations

Processing multivariate time series signals collected from sensor networks is challenging because of complex temporal dependencies and non-stationarity. With the advent of artificial intelligence (AI) like machine learning and deep learning, it has become possible to process sensor-driven time series data more effectively than traditional statistical methods.

This dissertation aims to develop machine learning and deep learning models to address machine fault diagnosis using multivariate time series signals collected from the Continuous Electron Beam Accelerator Facility (CEBAF) at Jefferson Lab. The first goal of the proposed work is to develop deep learning–based classification models and an unsupervised fault clustering approach …

Two Analytic Issues Arising From Models In Probability And Materials Science, Giang Vu Thanh Nguyen

Mathematics & Statistics Theses & Dissertations

This dissertation explores two distinct topics centered on mathematical models in probability theory and materials science. The first part investigates a series of functions derived from an adaptive algorithm designed to address the score-based secretary problem, a classic challenge in probability theory. This problem involves making immediate decisions to select the best candidate from a sequence of interviews. The algorithm aims to maximize the probability of selecting the optimal candidate based on observed scores. We prove two fundamental analytic properties of this sequence of functions as a theoretic support of the algorithm: first, the functions in the sequence each possess …

Systems Statistical Engineering – Hierarchical Fuzzy Constraint Propagation, Hengameh Fakhravar

Engineering Management & Systems Engineering Theses & Dissertations

Driven by the growing need in the 21st century for integrating rigorous statistical analysis into engineering research, there is a movement to develop an integrated statistical engineering science within statistics and quality communities (Hoerl & Snee, 2010; Anderson-Cook et al., 2012). Systems Statistical Engineering research seeks to integrate the Causal Bayesian hierarchical modeling (Pearl, 2009) and cybernetic control theory within Beer’s Viable System Model (1972, 1979, 1985) and the Complex Systems Governance framework (Keating, 2014; Keating & Katina, 2015, 2016) to produce multivariate systemic models for robust dynamic systems mission performance. Cotter & Quigley (2018) set forth the Bayesian systemic …

A Strict Physicality-Preserving Scheme For A 2d Q-Tensor Flow With A Singular Potential, Md Mashud Parvez

Mathematics & Statistics Theses & Dissertations

Nematic liquid crystals are a state of matter that exhibit properties between those of conventional liquids and solid crystals. Their unique ability to align molecules in specific directions makes them essential in various applications, including display technologies and advanced materials. To model their complex behavior, mathematical frameworks such as the Q-tensor model are used to describe the orientation and degree of molecular order. In this work, we introduce a numerical scheme for a two-dimensional (2D) dynamic Q-tensor model, which is formulated as an L²-gradient flow driven by the liquid crystal free energy and incorporates a singular potential to …

Towards Improving Computational Modeling Of The Lumbar Spine - Impact Of Material Properties And Laminotomy On Spinal Biomechanics, Isaac K. Kumi

Mechanical & Aerospace Engineering Theses & Dissertations

Spinal ligaments play a crucial role in maintaining the mechanical stability of the lumbar spine. These dense, collagenous tissues not only resist excessive motion but also distribute loads between spinal components to protect neural structures. Traditionally, the mechanical response of ligaments has been modeled using linear elastic assumptions, which treat the tissue as having a constant stiffness regardless of loading history. While this simplifies analysis, it fails to capture the time-dependent behaviors, such as creep, stress relaxation, and hysteresis, that are characteristic of biological tissues.

Viscoelastic modeling may provide a more physiologically accurate representation by incorporating both elastic and viscous …

Multimedia Forensics: Identification And Verification Of Source Camera, Vehicle Speed Estimation, And Deepfakes Detection, Jiajun Jiang

Electrical & Computer Engineering Theses & Dissertations

This dissertation advances multimedia forensics by addressing three critical research areas that enhance the authenticity verification and analysis of digital media. Multimedia forensics, which encompasses techniques for examining images, videos, audio, and text, faces increasing challenges due to sophisticated editing tools and massive data volumes. In the first study, a fast source camera identification and verification method based on PRNU analysis is proposed for video forensic investigations. By integrating camera rolling and I-frame analysis, this approach achieves a processing speed improvement of at least 15 times over conventional frame-by-frame methods while reducing false positives. The second study focuses on vehicular …