Biomedical Commons^™

Deep Learning-Based Multi-Class Classification Of Breast Cancer Ultrasound Images Using Convolutional Neural Networks, Andres E. Dewendt Urdaneta

ATU Scholars Symposium

The National Cancer Institute forecasts 2,001,140 cancer diagnoses in 2024, with approximately 600,000 expected deaths. Breast cancer is projected to be the most prevalent, with about 310,000 cases. Early diagnosis is critical to improving outcomes, and various diagnostic technologies, including imaging, biopsies, and blood tests, play a vital role. Image testing methods include X-rays, ultrasounds, magnetic resonance imaging (MRI), and PET scans. Artificial intelligence (AI) has recently significantly improved cancer detection, improving speed, accuracy, and effectiveness. This research project uses a convolution neural network (CNN) to analyze ultrasound breast images, classifying them as benign, malignant, or normal. Our CNN model …

Removing Eog Artifacts From Eeg Recordings Using Deep Learning, Christian O'Reilly, Scott Huberty

Faculty Publications

The electroencephalogram (EEG) directly measures the electrical activity generated by the brain. Unfortunately, it is often contaminated by various artifacts, notably those caused by eye movements and blinks (EOG artifacts). Such artifacts are usually removed using an independent component analysis (ICA) or other blind source separation techniques. However, it is difficult to assess whether subtracting EOG components estimated through ICA removes some neurogenic activity. It is crucial to address this question to avoid biasing EEG analyses. Toward that objective, we developed a deep learning model for EOG artifact removal that exploits information about eye movements available through eye-tracking (ET). Using …

A Reliable And Efficient Detection Pipeline For Rodent Ultrasonic Vocalizations, Sabah Shahnoor Anis, Devin Mark Kellis, Kris Ford Kaigler, Marlene A. Wilson, Christian O'Reilly

Faculty Publications

Analyzing ultrasonic vocalizations (USVs) is crucial for understanding rodents' affective states and social behaviors, but the manual analysis is time-consuming and prone to errors. Automated USV detection systems have been developed to address these challenges. Yet, these systems often rely on machine learning and fail to generalize effectively to new datasets. To tackle these shortcomings, we introduce ContourUSV, an efficient automated system for detecting USVs from audio recordings. Our pipeline includes spectrogram generation, cleaning, pre-processing, contour detection, post-processing, and evaluation against manual annotations. To ensure robustness and reliability, we compared ContourUSV with three state-of-the-art systems using an existing open-access USV …

Clinical Use Of Sit2stand Ai Application For Kinematic Analysis In Prosthesis Users., Samerial Brown

Posters - 2025

Biomechanical analysis is a tool to evaluate prosthetic and orthotic patient's. These tools offer the clinician capability of understanding the mechanism of injury, gait deviation or prosthesis problem. Video based analysis require expensive hardware, software, and training which sometimes costs $40-100,000.

The recent advent of artificial intelligence (AI) has opened up the possibility of acquiring high speed human motion video analysis using low-cost hardware and open-source machine learning algorithms. Still, free assessments like the Sit2Stand test is a current clinical outcome measure which assesses ability of a patient to stand and sit as fast as possible 5x. The faster the …

Role Of Eye-Tracking Technology And Software Algorithms In Enhancing Adhd Detection And Diagnosis: A Systematic Literature Review, Lauren E. Perkins

Honors College Theses

This systematic literature review explores the role of eye-tracking technology and software algorithms in enhancing the detection and diagnosis of ADHD. ADHD, a neurodevelopmental disorder affecting both children and adults, is traditionally diagnosed through behavioral assessments, which may lack objectivity. Recent studies suggest that eye-tracking, specifically focusing on saccades, fixations, and blink rates, offers the potential for more accurate and objective measures of ADHD. The review examines clinical trials, observational studies, and machine learning research to assess the correlation between ADHD and eye movement patterns. Results indicate that individuals with ADHD exhibit distinct eye movement patterns, which can be quantified …

Deep Learning Applications For Predictive Modeling In Cancer Therapy And Enzyme Encoding, Mengmeng Liu

LSU Doctoral Dissertations

Predictive modeling has revolutionized computational biology and molecular bioinformatics, enabling significant advancements in cancer therapy and functional enzyme characterization. Despite considerable progress, significant challenges remain in accurately predicting combinational cancer therapies and systematically representing enzyme functions for computational applications. Traditional methods struggle with capturing the complex interactions between drugs and biological networks, as well as representing hierarchical relationships within enzyme classifications. This dissertation addresses these limitations by developing advanced deep learning models tailored to enhance predictive performance in both domains.

First, a data augmentation strategy is introduced to improve anticancer drug synergy prediction by generating pharmacologically relevant drug pairs based …

Electrochemical Detection Of Dopamine Using Screen-Printed Graphene Electrode For Cancer Diagnosis And Therapy, Pritu P. Sarkar, Nazmul Islam

Research Symposium

Background: Dopamine plays a critical role in various essential functions, including motor control, hormone regulation, cognition, learning, and the reward system. In healthy individuals, dopamine levels are extremely low, with concentrations ranging from 0 to 0.25 nM in blood and 0.3 to 3.13 µM in urine. Abnormal levels are linked to disorders like Parkinson’s, schizophrenia, Alzheimer’s, epilepsy, hypertension, and arrhythmia. Abnormal dopamine levels can indicate the presence of certain cancers. Dopamine receptors may be therapeutic targets for treating cancer, especially breast and colon cancer. Thus dopamine can increase the efficacy of anticancer drugs in breast and colon cancer. Detecting dopamine …

Conversational Voice User Interfaces Supporting Individuals With Down Syndrome: A Literature Review, Franceli L. Cibrian, Concepción Valdez, Lauren Min, Vivian Genaro Motti

Engineering Faculty Articles and Research

Conversational Voice User Interfaces (CVUIs) are widely used in commercial applications such as personal assistants. CVUIs are beneficial for most users as they enable interaction through speech and natural language. However, recent studies indicate that underrepresented user groups, such as individuals with speech impairments and specifically those with Down syndrome, face challenges in using voice commands to control CVUIs. The anatomical and physiological differences affecting the voice, speech, fluency, and prosody of users with Down syndrome hinder their experience with CVUIs. This article presents the results of 43 papers related to the use of voice user interfaces supporting individuals with …

Limitations In Speech Recognition For Young Adults With Down Syndrome, Franceli L. Cibrian, Yingying 'Yuki' Chen, Kayla Anderson, Cecilia Marie Abrahamsson, Vivian Genaro Motti

Engineering Faculty Articles and Research

Speech recognition has the potential to make technology more accessible to users. However, the accuracy of speech recognition remains limited for users with disabilities, including those with Down Syndrome, and the types and frequencies of recognition errors are poorly understood. This paper characterizes these problems, focusing on errors occurring when recognizing Down Syndrome speech. We analyze the transcripts from six speech recognition algorithms (Google, IBM, Otter.ai, Microsoft, AssemblyAI, OpenAI) using the audio content of 15 individuals with Down Syndrome (331 dialogues; 3428 words). Our analysis shows: (1) significant difference in speech recognition accuracy for people with Down Syndrome compared to …

Medical Ai: Solving Healthcare Challenges And Inspiring Ai Innovation, Xiaowei Yu

Computer Science and Engineering Dissertations - Archive

Artificial Intelligence (AI) is transforming healthcare by enabling large-scale analysis of medical data and integrating multimodal information for more comprehensive diagnostics. I present my work addressing fundamental and challenging problems in developing state-of-the-art AI models for medical data analysis, including multimodal brain data and other medical datasets. Additionally, I design brain-inspired AI models by integrating insights from organizational principles of brain networks. Specifically, my research tackles three critical aspects: (1) AI in Computational Neuroscience, where I design deep learning models for brain network analysis to uncover the organizational principles of brain networks; (2) Brain-Inspired AI, where I integrate superior brain …

Neurovascular Coupling Impairments In Acute Traumatic Brain Injury: An Eeg-Nirs Analysis, Zachary Armstrong

Bioengineering Theses - Archive

Traumatic brain injury (TBI) is a major cause of neurological impairment, often leading to variable recovery and uncertain prognosis in the neurocritical care setting. There is a pressing clinical need for robust, physiologically grounded biomarkers to inform prognosis and therapeutic decision-making in acute TBI. This thesis investigates neurovascular coupling (NVC), the physiological coordination between neuronal activity and cerebral blood flow, as a candidate biomarker for brain function and recovery after injury.

A prospective cohort study was performed using simultaneous electroencephalography (EEG) and near-infrared spectroscopy (NIRS) recordings in patients with moderate-to-severe TBI and healthy controls. Wavelet transform coherence (WTC) analysis was …

Cochlear Electrode Insertion Training Model, Sarah Powell, Kaelyn E. Kraley, Nathan J. Smith

Williams Honors College, Honors Research Projects

Cochlear implant surgery is a delicate procedure performed by Otolaryngologists (ENTs) to implant an electronic device into the inner ear to provide a sense of sound for people who are profoundly deaf or hard of hearing. The current practices of training involve cadavers and 3D-printed models. Cadavers are commonly used but are expensive, single-use, and do not provide visual and haptic feedback, which are essential for medical students. 3D printed models are less commonly used and are hard to fabricate and not as realistic. If medical students are not properly trained for this delicate procedure, then risks are significantly increased …

A Novel Real-Time Threshold Algorithm For Closed-Loop Epilepsy Detection And Stimulation System, Liang Hung Wang, Zhen Nan Zhang, Chao Xin Xie, Hao Jiang, Tao Yang, Qi Peng Ran, Ming Hui Fan, I. Chun Kuo, Zne Jung Lee, Jian Bo Chen, Tsung Yi Chen, Shih Lun Chen, Patricia Angela R. Abu

Department of Information Systems & Computer Science Faculty Publications

Epilepsy, as a common brain disease, causes great pain and stress to patients around the world. At present, the main treatment methods are drug, surgical, and electrical stimulation therapies. Electrical stimulation has recently emerged as an alternative treatment for reducing symptomatic seizures. This study proposes a novel closed-loop epilepsy detection system and stimulation control chip. A time-domain detection algorithm based on amplitude, slope, line length, and signal energy characteristics is introduced. A new threshold calculation method is proposed; that is, the threshold is updated by means of the mean and standard deviation of four consecutive eigenvalues through parameter combination. Once …

Advancing Electrical Stimulation: Full-Head Mri Segmentation For Abnormal Brain Anatomy With Tdcs, Andrew Birnbaum

Dissertations and Theses

Evaluating the effectiveness of transcranial direct current stimulation (tDCS) is essential for guiding its integration into therapeutic and performance-enhancement applications. In our laboratory, we investigate the efficacy of tDCS across multiple experimental models, including both animal and human studies. I have contributed significantly to the execution and analysis of these experiments, which include studies in rats and healthy human participants aimed at evaluating whether electrical stimulation of the motor cortex can enhance motor learning. These studies assess improvements in fine motor performance resulting from tDCS. In stroke patients, I contribute to our investigation of tDCS as a rehabilitative intervention, particularly …

Laser-Induced Graphene For Early Disease Detection: A Review, Sri Ramulu Torati, Gymama Slaughter

Center for Bioelectronics Publications

Electrochemical biosensors have been instrumental in early disease detection, facilitating effective monitoring and treatment. The emergence of graphene has significantly advanced sensor technology in various fields, including biomedicine, electronics, and energy. In this landscape, laser‐induced graphene (LIG) has emerged as a superior alternative to conventional graphene synthesis methods. Its straightforward fabrication process and compatibility with wearable devices boost its practicality and potential for real‐world applications. This review highlights the transformative potential of LIG in biosensing, showcasing its contributions to the development of next‐generation diagnostic tools for early disease detection. An overview of the LIG synthesis process and its applications in …

Identification Of Fiducial Points In Seismocardiographic Cycles Using Manual And Automated Annotation Methods, Jasmine-Vy T. Truong

Honors Undergraduate Theses

There is currently a need for complementary methods for non-invasive cardiac monitoring. Seismocardiography (SCG), the measurement of cardiac-induced vibrations at the chest surface, has shown potential clinical utility. Improving the reliability of detecting fiducial points of electrocardiography (ECG) and SCG, which collectively capture the electro-mechanical cardiac activities, could expand ECG/SCG utility as a low-cost, accessible tool for clinical assessment. This study identifies commonly accepted criteria for fiducial point detection in SCG and ECG through an extensive literature review and signal processing techniques. The previous criteria were evaluated to identify their strengths and weaknesses. Based on the findings, an improved set …

Advanced Nanocomposite-Based Electrochemical Sensor For Ultra-Sensitive Dopamine Detection In Physiological Fluids, Megha Shinde, Gymama Slaughter

Center for Bioelectronics Publications

This study presents a novel point-of-care electrochemical sensor for dopamine (DA) detection, featuring a flexible laser-induced graphene (LIG) modified with a unique nanocomposite comprising Nb₄C₃T_x MXene, polypyrrole (PPy), and iron nanoparticles (FeNPs). The LIG-Nb₄C₃T_x MXene-PPy-FeNPs is characterized by scanning electron microscopy to confirm the successful surface modification. The electrochemical performance of the fabricated sensor via cyclic voltammetry showed significant electrochemical activity upon Nb₄C₃T_x MXene-PPy-FeNPs nanocomposite modification of the LIG surface with an increased peak anodic current (Ipa) from 43 μA to 104 μA. The sensor …

Personalized Prediction Of Tumor Recurrence With Image-Guided Physics-Informed Computational Model In High-Grade Gliomas, Walia Farzana, Khan M. Iftekharuddin

Electrical & Computer Engineering Faculty Publications

High grade gliomas are infiltrating tumors characterized by their diffusive invasion and proliferative growth. Across and within patients heterogeneity of tumors makes it challenging to determine tumor spatial extent after surgical resection. Traditionally, tumor growth predictions after surgical resections rely on generalized models and population-based observations, which do not account for individual patient differences. To address this gap, we propose a personalized approach with image-guided computational model (digital twin) that incorporates physics-based modeling to predict tumor recurrence. Our digital twin involves an inverse modeling step, followed by a recurrence model that accounts for varying surgical effects. The physics-guided inverse model …

Detecting Sars-Cov-2 In Ct Scans Using Vision Transformer And Graph Neural Network, Kamorudeen Amuda, Almustapha Wakili, Tomilade Amoo, Lukman Agbetu, Qianlong Wang, Jinjuan Feng

Electrical & Computer Engineering Faculty Publications

The COVID-19 pandemic has presented significant challenges to global healthcare, bringing out the urgent need for reliable diagnostic tools. Computed Tomography (CT) scans have proven instrumental in detecting COVID-19-induced lung abnormalities. This study introduces Convolutional Neural Network, Graph Neural Network, and Vision Transformer (ViTGNN), an advanced hybrid model designed to enhance SARS-CoV-2 detection by combining Graph Neural Networks (GNNs) for feature extraction with Vision Transformers (ViTs) for classification. Using the strength of CNN and GNN to capture complex relational structures and the ViT capacity to classify global contexts, ViTGNN achieves a comprehensive representation of CT scan data. The model was …

A Method For Ultrasound Servo Tracking For Puncture Needle, Shitong Ye, Bo Yang, Hao Quan, Shan Liu, Minyu Tang, Jiawei Tian

Electrical & Computer Engineering Faculty Publications

Computer-aided surgical navigation technology helps and guides doctors to complete the operation smoothly, which simulates the whole surgical environment with computer technology, and then visualizes the whole operation link in three dimensions. At present, common image-guided surgical techniques such as computed tomography (CT) and X-ray imaging (X-ray) will cause radiation damage to the human body during the imaging process. To address this, we propose a novel Extended Kalman filter-based model that tracks the puncture needle-point using an ultrasound probe. To address the limitations of Kalman filtering methods based on position and velocity, our method of Kalman filtering uses the position …