Biomedical Engineering and Bioengineering Commons^™

Investigation Of Pmma Cement Penetration In Prepared Femoral Heads With A Longitudinal Slot For Hip Resurfacing Arthroplasty, Scott Snyder

Biomedical Engineering

Hip resurfacing arthroplasty is becoming increasingly popular in younger, active patients due to its preservation of natural biomechanics. Failure of these implants can be very traumatic and potentially life threatening. The role of cement penetration in early implant failure is not yet known, and must be investigated. This study specifically investigates the effects of a 5mm by 5mm longitudinal channel on cement penetration into the femoral head. High-density open-cell reticulated vitreous carbon foam cylinders and Huntsman Pro-cast® 20 implants based on the Birmingham Hip Resurfacing implant were used. It was determined cement penetration was increased in the area immediately surrounding …

Laser Etched Pmma Microfluidic Chip Design And Manufacture With Applications In Capillary Zone Electrophoresis, Evan Allen Barbre

Master's Theses

This thesis encompasses a feasibility study of using low-cost materials to manufacture microfluidic chips that can perform the same functions as chips manufactured using traditional methods within an acceptable range of efficiency of chips created with more exotic methods and materials. The major parts of the project are the selection and characterization of the fabrication methods for creating the channels for fluid flow, the methods for sealing the channels to create a usable chip and the electrophoretic separations of carboxylated microspheres of different potentials. In this work we seek to answer the question if laser-etched PMMA microfluidic chips are comparable …

Sar Map Of Gel Phantom In A 64mhz Mri Birdcage By Fiber-Optic Thermometry And Fdtd Simulation, Chirag Mukesh Patel

Master's Theses

As implantable medical devices are being used more often to treat medical problems for which pharmaceuticals don’t suffice, it is important to understand their interactions with commonly used medical modalities. The interactions between medical implants and Magnetic Resonance Imaging machines have proven to be a risk for patients with implants.

Implanted medical devices with elongated metallic components can create harmful levels of local heating in a Magnetic Resonance Imaging (MRI) environment [1]. The heating of a biological medium under MRI is monitored via the Specific Absorption Rate (SAR). SAR, defined as power absorbed per unit mass (W/kg), can be calculated …

Race- And Sex-Related Differences In Retinal Thickness And Foveal Pit Morphology, Melissa Wagner-Schuman, Adam M. Dubis, Rick Nordgren, Yuming Lei, Daniel Odell, Hellen Chiao, Eric Weh, William Fischer, Yusufu N. Sulai, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Purpose.

To examine sex- and race-associated differences in macular thickness and foveal pit morphology by using spectral-domain optical coherence tomography (SD-OCT).

Methods.

One hundred eighty eyes of 90 healthy patients (43 women, 47 men) underwent retinal imaging with spectral-domain OCT. The lateral scale of each macular volume scan was corrected for individual differences in axial length by ocular biometry. From these corrected volumes, Early Treatment Diabetic Retinopathy Study (ETDRS) grids of retinal thickness were generated and compared between the groups. Foveal morphology was measured with previously described algorithms.

Results.

Compared with the Caucasians, the Africans and African Americans had reduced …

Modeling Of Equilibrium Point Trajectory Control In Human Arm Movements, Kai Chen

Dissertations

The underlying concept of the Equilibrium Point Hypothesis (EPH) is that the CNS provides a virtual trajectory of joint motion, representing spacing and timing, with actual movement dynamics being produced by interactions of limb inertia, muscle viscosity and speed/position feedback from muscle spindles. To counter criticisms of the EPH, investigators have proposed the use of complex virtual trajectories, non-linear damping, stiffness and time varying stiffness to the EPH model. While these features allow the EPH to adequately produce human joint velocities, they conflict with the EPH’s premise of simple pre-planned monotonic control of movement trajectory. As a result, this study …

Non-Invasive Interventions Top Reduce Low Back Dysfunction, Nadi Atalla

Theses

This study aims to quantitatively evaluate the low back condition so that low back dysfunction can be identified and classified when measurements show a variance from the normal. The evaluation is done by using the hysteresis concept. In this study, subjects received two different types of treatment: massaging using a mechanical massager for ten minutes and manual massaging by a professional physician. Using the Automated Anatomic Torsion Monitor (A-ATM), the low back of the subject was evaluated before and after treatment. The change in Hysteresis Loop Area (HLA) was -12.5% for mechanical massaging and -15.7% for manual massaging. The negative …

Development Of A Centrifugal Microfluidic Device For Separation And Sorting In Biological Fluids, Gaurav Sunil Bagwe

Theses

A wide interest in employing micron-scale, integrated biochemical analysis systems for economical and rapid diagnosis has been the principal motivation behind this project. Low operating costs, portability and fast diagnosis times make centrifugal microfluidic devices an attractive option in patient-side diagnostics. Some essential tasks to be performed in microfluidic devices are sample-reagent transport, mixing, separation and detection. All these tasks require precise control of the RPM and spinning time. Centrifugal micro-fluidic platforms have been successfully implemented for detection of hepatitis A, tetanus, as well as for measurement of haemoglobin and hematocrit, for DNA analysis, and for assessment of cardiac disease …

Emg-Based Determination Of Upper Extremity Virtual Trajectory, Akshata Anand Korgaonkar

Theses

Movement and position of the limbs of the human body are controlled by the interaction between the muscle and the peripheral and central nervous system. This interaction is nothing but the neural signals. Neural signals are electrical in nature and referred as action potentials. An EMG is a summation of action potentials from the muscle fibers under the electrode placed on the skin. Thus it is easy to estimate the nature and timing of the movement from the firing of an EMG signal. Kai Chen in his dissertation has built the model to represent the arm movement with stiffness, damping, …

Motor Planning For Reach Memorization Task In 3d Space, Atul Narkhede

Theses

Arm reaching towards remembered targets in three-dimensional space was analyzed. The aim of the project was to test whether various amounts of visual feedback, in combination with constant forces applied to the arm during reaching would affect the magnitude and direction of the reaching errors. The robotic arm (Haptic Master, Moog Inc) recorded the spatial position of the pointer attached to its end effector, thus tracking the movement of the subject's arm. Three haptically rendered targets at different points in space were presented to the subjects using stereo virtual environment. The simulation was programmed using Visual C++ and OpenGL. Eight …

Tilt Simulation : Virtual Reality Based Upper Extremity Stroke Rehabilitation, Harish Damodaran

Theses

The primary objective of this research is to design a recreational rehabilitation videogame that interactively encourages purposeful upper extremity gross motor movements. The simulation is also capable of continuous game modification to fit changing therapy goals, to match the needs of the players, and to provide continued motivation while capturing the interactive repetition. This thesis explains the design and features of this latest simulation - Tilt. Tilt uses physics to develop an engaging training experience and provides a realistic approach to virtual reality simulation including friction, elasticity and collisions between objects. It is designed to train upper extremity function as …

Effects Of Hypertension And Aging On Vascular Smooth Muscle Cell Contribution To Reconstituted Aortic Tissue Stiffness, Nancy Lisa Sehgel

Theses

Aortic stiffness increases with hypertension and aging, and much of this increase has been thought to occur due to changes in the extracellular matrix. However, an increase in cell stiffness could also be important. To study the cellular contribution to aortic stiffness, a reconstituted aortic tissue model (composed of vascular smooth muscle cells (VSMCs) in a collagen matrix) was developed. VSMCs isolated from thoracic aortic samples of 5-week and 18-week old male spontaneously hypertensive rats (SHR) and normotensive Wistar-Kyoto (WKY) rats were passaged four times and then separately incubated in collagen for two days on a cylindrical mandrel. The resulting …

Characterising 3d Soft Tissue Features On Joint Surfaces, Colm O'Kane

Conference Papers

A crucial aspect of orthopaedic implant design is the prediction of surgical outcomes when the shape of a bone is necessarily altered by the addition of the implant. Matching native kinematics as closely as possible is generally considered a core aim of joint replacement surgery. The overall hypothesis behind this research is that soft tissue geometry, including cartilage thickness distribution and ligament attachment sites, influences kinematics in the knee joint. In order to enable investigation of possible links between geometry and kinematics, the ability to characterise the shape variation of the soft tissue relative to the underlying bony geometry must …

Novel Bioelectrical Measurement Using A Digital Biopotential Monode, Mark Nolan, Edward Burke, Eugene Coyle

Conference Papers

In conventional biopotential recording, two or more electrodes are placed on the body. A unipolar lead records the time-varying electrical potential at a single point (relative to a reference potential) via one signal electrode. A bipolar lead records the time-varying potential difference between two points via two signal electrodes. In each case, the signal electrodes are connected to high impedance amplifier inputs, while an additional electrode provides a low-impedance path between the amplifier and human subject. Bipolar leads are usually preferred since interference appearing at both signal electrodes can be eliminated using an instrumentation amplifier with high CMRR. A drawback …

Intelligibility Of Electrolarynx Speech Using A Novel Hands-Free Actuator, Brian Madden, Mark Nolan, Ted Burke, James Condron, Eugene Coyle

Conference Papers

During voiced speech, the larynx provides quasi-periodic acoustic excitation of the vocal tract. In most electrolarynxes, mechanical vibrations are produced by a linear electromechanical actuator, the armature of which percusses against a metal or plastic plate at a frequency within the range of glottal excitation. In this paper, the intelligibility of speech produced using a novel hands-free actuator is compared to speech produced using a conventional electrolarynx. Two able-bodied speakers (one male, one female) performed a closed response test containing 28 monosyllabic words, once using a conventional electrolarynx and a second time using the novel design. The resulting audio recordings …

The Effect Of Cox-2 Specific Inhibition On Direct Fracture Healing In The Rabbit Tibia, David J. Hak, Kurt S. Schulz, Behrang Khoie, Scott J. Hazelwood

Biomedical Engineering

Objective: The purpose of this study was to evaluate the effect of Cox-2 administration on direct (primary) fracture healing.

Methods: A transverse tibial osteotomy was created in adult male rabbits and rigidly fixed in compression using a 2.7-mm dynamic compression plate. Animals were randomized to receive either rofecoxib (12.5 mg orally per day) or placebo. Animals were killed at 4 weeks and fracture healing assessed by mechanical testing.

Results: There were no significant differences between the control and Cox-2 treated animals in terms of mechanical strength at 4 weeks. There was a high complication rate of peri-implant fractures …

An Evolved Adeno-Associated Viral Variant Enhances Gene Delivery And Gene Targeting In Neural Stem Cells, Jae-Hyung Jang, James Koerber, Jung-Suk Kim, Prashanth Asuri, Tandis Vazin, Melissa Bartel, Albert Keung, Inchan Kwan, David Schaffer

Bioengineering

Gene delivery to, and gene targeting in, stem cells would be a highly enabling technology for basic science and biomedical application. Adeno-associated viral (AAV) vectors have demonstrated the capacity for efficient delivery to numerous cells, but their application to stem cells has been limited by low transduction efficiency. Due to their considerable advantages, however, engineering AAV delivery systems to enhance gene delivery to stem cells may have an impact in stem cell biology and therapy. Therefore, using several diverse AAV capsid libraries—including randomly mutagenized, DNA shuffled, and random peptide insertion variants—we applied directed evolution to create a “designer” AAV vector …

Augmented Control Of A Hands-Free Electrolarynx, Brian Madden, James Condron, Eugene Coyle

Conference Papers

During voiced speech, the larynx acts as the sound source, providing a quasi-periodic excitation of the vocal tract. Following a total laryngectomy, some people speak using an electrolarynx which employs an electromechanical actuator to perform the excitatory function of the absent larynx. Drawbacks of conventional electrolarynx designs include the monotonic sound emitted, the need for a free-hand to operate the device, and the difficulty experienced by many laryngectomees in adapting to its use. One improvement to the electrolarynx, which clinicians and users frequently suggest, is the provision of a convenient hands-free control facility. This would allow more natural use of …

High Power, Low Frequency Ultrasound: Meniscal Tissue Interaction And Ablation Characteristics, Brendan O'Daly, Edmund Morris, Graham Gavin, Conor Keane, John O Byrne, Garrett Mcguinness

Articles

Abstract—This study evaluates high power low frequency ultrasound transmitted via a flat vibrating probe tip as an alternative technology for meniscal debridement in the bovine knee. An experimental force controlled testing rig was constructed using a 20 kHz ultrasonic probe suspended vertically from a load cell. Effect of variation in amplitude of distal tip displacement (242–494 mm peak-peak) settings and force (2.5–4.5 N) on tissue removal rate (TRR) and penetration rate (PR) for 52 bovine meniscus samples was analyzed. Temperature elevation in residual meniscus was measured by embedded thermocouples and histologic analysis. As amplitude or force increases, there is a …

A Full-Depth Amalgamated Parallel 3d Geometric Multigrid Solver For Gpu Clusters, Dana A. Jacobsen, Inanc Senocak

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Numerical computations of incompressible flow equations with pressure-based algorithms necessitate the solution of an elliptic Poisson equation, for which multigrid methods are known to be very efficient. In our previous work we presented a dual-level (MPI-CUDA) parallel implementation of the Navier-Stokes equations to simulate buoyancy-driven incompressible fluid flows on GPU clusters with simple iterative methods while focusing on the scalability of the overall solver. In the present study we describe the implementation and performance of a multigrid method to solve the pressure Poisson equation within our MPI-CUDA parallel incompressible flow solver. Various design decisions and algorithmic choices for multigrid methods …

Scalability Of Incompressible Flow Computations On Multi-Gpu Clusters Using Dual-Level And Tri-Level Parallelism, Dana A. Jacobsen, Inanc Senocak

Mechanical and Biomedical Engineering Faculty Publications and Presentations

High performance computing using graphics processing units (GPUs) is gaining popularity in the scientific computing field, with many large compute clusters being augmented with multiple GPUs in each node. We investigate hybrid tri-level (MPI-OpenMP-CUDA) parallel implementations to explore the efficiency and scalability of incompressible flow computations on GPU clusters up to 128 GPUS. This work details some of the unique issues faced when merging fine-grain parallelism on the GPU using CUDA with coarse-grain parallelism using OpenMP for intra-node and MPI for inter-node communication. Comparisons between the tri-level MPI-OpenMP-CUDA and dual-level MPI-CUDA implementations are shown using computationally large computational fluid dynamics …