Other Biomedical Engineering and Bioengineering Commons^™

Developent Of A Phospholipid Encapsulation Process For Quantum Dots To Be Used In Biologic Applications, Logan Grimes

Master's Theses

The American Cancer Society predicts that 1,665,540 people will be diagnosed with cancer, and 585,720 people will die from cancer in 2014. One of the most common types of cancer in the United States is skin cancer. Melanoma alone is predicted to account for 10,000 of the cancer related deaths in 2014. As a highly mobile and aggressive form of cancer, melanoma is difficult to fight once it has metastasized through the body. Early detection in such varieties of cancer is critical in improving survival rates in afflicted patients. Present methods of detection rely on visual examination of suspicious regions …

Team Omnimouse, Derek J. Halman, Josh B. Porter, Steven A. Silver, Ian S. Stemper

Computer Engineering

INFORMATION, DATA, FIGURES AND DRAWINGS EMBODIED IN THIS DOCUMENT ARE STRICTLY CONFIDENTIAL AND ARE SUPPLIED ON THE UNDERSTANDING THAT THEY WILL NOT BE DISCLOSED TO THIRD PARTIES WITHOUT THE PRIOR WRITTEN CONSENT OF QUALITY OF LIFE PLUS.

Developing Defined And Scalable 3d Culture Systems For Culturing Human Pluripotent Stem Cells At High Densities, Yuguo Lei, Daeun Jeong, Jifang Xiao, David V. Schaffer

Department of Chemical and Biomolecular Engineering: Faculty Publications

Human pluripotent stem cells (hPSCs)—including embryonic stem cells (hESCs) and induced pluripotent stem cells (hiPSCs)—are very promising candidates for cell therapies, tissue engineering, high throughput pharmacology screens, and toxicity testing. These applications require large numbers of high quality cells; however, scalable production of human pluripotent stem cells and their derivatives at a high density and under well-defined conditions has been a challenge. We recently reported a simple, efficient, fully defined, scalable, and good manufacturing practice (GMP) compatible 3D culture system based on a thermoreversible hydrogel for hPSC expansion and differentiation. Here, we describe additional design rationale and characterization of this …

A Study Of Ciliary Beating In Chlamydomonas, Xin Li

Renée Crown University Honors Thesis Projects - All

The goal of this research is to understand how a unicellular green alga, Chlamydomonas-reinhardtii, responds to red light (670nm) and sound waves, by monitoring the beating frequency of its two cilia, which control cell motility. Ciliary beating frequency (BF) is proportional to the production of ATP, mainly generated by photosynthesis. A photosynthesis inhibitor, 3-(3-, 4-dichlorophenyl)-1, 1-dimethylurea (DCMU) decreases ATP production by photosynthesis. I used DCMU as a tool to analyze the red light effect on BF.

In the process of studying the effect of red light, I unexpectedly discovered experimental conditions for unstable ciliary beating (as shown in the video). …

Classification And Quantification Of Phenotypic Characteristics Of Normal And Dysplastic Oral Cells, Jackson W. Boice

Biomedical Engineering Undergraduate Honors Theses

Introduction Oral cancer accounts for 2.5% of all cancer cases in the United States. The 5 year survival rate or stage 1 or localized oral cancer is 82%, and the survival rate of unstaged oral cancer is only 50%; therefore, early diagnosis is key. Current clinical practices for determining malignancy of tissue include physical examination and surgical biopsy, which can be plagued by high variability between observers and are invasive for the patient. Proflavine intercalates between base pairs of nucleic acids and has excitation and emission peaks at 455 (+/- 20) nm and 515 nm respectively; therefore, it can be …

Optimizing In Vitro Extracellular Matrix Production Using Polymer Scaffolds With Targeted Pore Size, Addison M. Walker

Biomedical Engineering Undergraduate Honors Theses

Extracellular matrix (ECM) has been shown to provide the framework needed for healthy tissue to grow after experiencing an injury. The optimization of growing ECM is a pressing concern in the tissue regeneration field. From prior research, an in vitro approach for harvesting ECM has been created using polyurethane (PU) foams seeded with cells. Our approach aimed at discovering if the pore size of the foams increased the amount of recovered ECM. Scaffolds of targeted pore size were created by separating sugar granules using a sieve, packing the sugar into a cylindrical mold, then pouring PU over the sugar. Three …

How Imbalanced Excitation And Inhibition May Cause Low Entropy Brain Dynamics, Qusay Redwan Alfaori

Biomedical Engineering Undergraduate Honors Theses

To study the effect of the imbalance of excitation and inhibition neurons on brain entropy using a computer model of a brain. The brain model will be composed of a neural network and entropy of the neural network will be measured quantitatively. Entropy in this context quantifies how many different patterns of activated neurons the brain can create. Imbalance between excitation and inhibition neurons causes the brain to malfunction, which can be an underlying cause of autism.

5ht And The 5ht Receptors- Relevance To Cardiac Valve Disease, Christopher Ryan Martindale

Biomedical Engineering Undergraduate Honors Theses

Recent studies have revealed that elevated levels of serotonin or 5HT lead to valve dysfunction. A mouse model was successfully established to investigate the effects on the aortic valve in subjects with elevated 5HT levels along with cardiovascular hypertension. For each two-week trial, eight C57BL/6J mice were divided into the following expermental groups: control, 5HT, angiotensin II, and 5HT+angiotensin II. The drug was delivered to the mice via osmotic pumps (Ang II: 0.4ng/g/min, 5HT:0.0025ng/g/min) or direct injections(Ang II: 0.1 mg, 5HT: 2.12 mg, every other day) and the blood pressure of the mice was continually monitored via the CODA tail …

Investigating The Shelf Life Of Benzoyl Peroxide Coated Nozzles For Bone Cement Application, Alysen Leigh Demzik

Renée Crown University Honors Thesis Projects - All

Two-solution bone cements (TSBC) were developed to address the limitations of current powder-liquid bone cements, however are characterized by a limited shelf life due to spontaneous free radical polymerization. As a solution to pre-polymerization concerns, the initiator benzoyl peroxide (BPO) was removed from the cement solution and incorporated into a thin film coating within the static mixing nozzle, allowing the BPO to integrate with the TSBC as it is mixed for use. Only short-term storage of BPO-coated nozzles and the subsequent effects on bone cement properties is known. The goal of this study was to investigate the effects of time, …

Validation Of A Diffuse Reflectance Microendoscope With Polydimethylsiloxane Optical Phantoms And Monte Carlo Modeling, Gage Joseph Greening

Biomedical Engineering Undergraduate Honors Theses

We have introduced a method for creating thin-film PDMS optical phantoms that can be used to validate a bench-top optical device called a Diffuse Reflectance Microendoscope (DRME). The DRME is acquires data on cell surface morphology and sub-surface diffuse reflectance, which may provide clinicians with the tools to diagnose oral cancer at earlier stages. Phantoms were created with PDMS. Optical properties of the phantoms were controlled with the addition of nigrosin and titanium dioxide. Depth of phantoms was controlled by a spin coater. The DRME was built with a combination of filters and dichroic mirrors to separate electromagnetic radiation in …

Poly (Glycerol Sebacate) Nanofibers And Nanofilms For Tissue Engineering Application, Stephanie Grace Cone

Biomedical Engineering Undergraduate Honors Theses

In the field of tissue engineering, the development of biodegradable scaffolds that provide both structure and functionality is a major challenge. The use of biological implants, such as decellularized tissues, provides a complete matrix with full tissue functionality, however, problems with immunogenicity often arise when implants from other organisms are used in treatments. As such, there are many benefits to the use of polymeric constructs in tissue engineering. The ability to customize the material, design, and size of an implant provides opportunities for increased structural support and controlled rates of biodegradation. The selection of polymers for tissue engineering applications requires …

Beginning Of Malignant Tumor Cells, Emily K. Shields

Biomedical Engineering Undergraduate Honors Theses

Despite advances in cancer treatments, cancer is still ranked the second leading cause of death. Cancers are started by cancer stem cells (CSCs). CSCs, also called tumor-initiating cells, are found in tumors and are responsible for the growth of tumors and the spread of cancer to other parts of the body. CSCs are very resistant, and cannot be killed by chemotherapy or radiation treatments. These cells can come from healthy stem cells. The environment surrounding the healthy stem cells and mature cells can cause mutations in the cell’s genetics, resulting in development of CSCs. The environment can also increase tumor …

Modeling Of An Oxygenation-Aided 3d Culture For Functional Beta-Cell Expansion, John Lance Mcreynolds

Biomedical Engineering Undergraduate Honors Theses

Introduction: Diabetes affects millions of people and its prevalence is increasing by 2-5% per year. A promising method for the control of diabetes is the transplant of pancreatic β-cell mass. Unfortunately, there is a shortage of the donor tissue that is needed to replace β-cell mass. A potential source of β-cells is the production of β-cells in vitro, but the proliferation rate of β-cells is very slow and elevating the proliferation rate can result in loss of cell function. We observed that β-cells benefit from being cultured in a 3D environment, but in the 3D culture the β-cells often die …

Application Of Limited Mixing In The Hele–Shaw Geometry In Fabrication Of Janus Hydrogels, Md Mahmudur Rahman

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

It is widely accepted that cells behave differently responding to the stiffness of their extracellular matrix (ECM). Such observations were made by culturing cells on hydrogel substrates of tunable stiffness. However, it was recently proposed that cells may sense how strongly they are tethered to ECM, not the local stiffness of ECM. To investigate both hypotheses, we developed a method to fabricate Janus polyacrylamide (PAAM) gels. We squeeze two drops of different concentrations in the Hele-Shaw geometry to generate radial Stokes flow. When the drops coalesce, limited mixing occurs at the interface due to the narrow confinement, and diffusion normal …

Material Differences In Equine Cortical And Trabecular Bone, Ryan B. Allen

Master's Theses

A greater understanding of bone materials would be beneficial in creating more accurate computer models and in the making of biomedical products involving bone. This study set out to determine whether cortical and trabecular bone are two separate materials, or whether they are the same material with a variance in porosity. To answer this question, samples were taken from different sections of the equine metacarpus, underwent densitometry analysis and were statistically analyzed. The majority of results suggest that the material is the same between varying densities of bone and thus the same between cortical and trabecular bone. These particular results …

From Cardiac Optical Imaging Data To Body Surface Ecg: A Three Dimensional Ventricle Model, Yihua Zhao

Theses and Dissertations--Biomedical Engineering

Understanding the mechanisms behind unexplained abnormal heart rhythms is important for diagnosis and prevention of arrhythmias. Many studies have investigated the mechanisms at organ, tissue, cellular and molecular levels. There is considerable information available from tissue level experiments that investigate local action potential properties and from optical imaging to observe activity propagation properties at an organ level. By combining those electrophysiological properties together, in the present study we developed a simulation model that can help in estimation of the resulting body surface potentials from a specific electrical activity pattern within the myocardium. Some of the potential uses of our model …

Novel Technologies For The Detection And Mitigation Of Drowsy Driving, Samuel Lawoyin

Theses and Dissertations

In the human control of motor vehicles, there are situations regularly encountered wherein the vehicle operator becomes drowsy and fatigued due to the influence of long work days, long driving hours, or low amounts of sleep. Although various methods are currently proposed to detect drowsiness in the operator, they are either obtrusive, expensive, or otherwise impractical. The method of drowsy driving detection through the collection of Steering Wheel Movement (SWM) signals has become an important measure as it lends itself to accurate, effective, and cost-effective drowsiness detection. In this dissertation, novel technologies for drowsiness detection using Inertial Measurement Units (IMUs) …

Analysis And Modeling Of The Roles Of Actin-Myosin Interactions In Bladder Smooth Muscle Biomechanics, Seyed Omid Komariza

Theses and Dissertations

Muscle mechanical behavior potentially plays an important role in some of the most common bladder disorders. These include overactive bladder, which can involve involuntary contractions during bladder filling, and impaired contractility or underactive bladder, which may involve weak or incomplete contractions during voiding. Actin-myosin cross-bridges in detrusor smooth muscle (DSM) are responsible for contracting and emptying the bladder. The total tension produced by muscle is the sum of its preload and active tensions. Studies suggest that actin-myosin cross-links are involved in adjustable preload stiffness (APS), which is characterized by a preload tension curve that can be shifted along the length …

The Effect Of Various Pathologies On Bone Quality, Daniel S. Porter

Theses and Dissertations--Biomedical Engineering

Bone’s ability to resist fracture is often ignored until a low-energy fracture occurs. Patients with Chronic Kidney Disease (CKD) or osteoporosis are at an increased risk of low-energy fracture. Generally, fracture risk is evaluated by using a bone mineral density (BMD) test. BMD values; however, do not fully predict bone’s ability to resist fracture. This suggests that other parameters may be involved. Bone quality is the term used to describe these parameters, which are categorized into three groups: structural, material, and microdamage. The aim of this dissertation research was to examine whether bone quality was altered in patients who: 1) …

Human Cardiovascular Responses To Artificial Gravity Variables: Ground-Based Experimentation For Spaceflight Implementation, Mark Howarth

Theses and Dissertations--Biomedical Engineering

One countermeasure to cardiovascular spaceflight deconditioning being tested is the application of intermittent artificial gravity provided by centripetal acceleration of a human via centrifuge. However, artificial gravity protocols have not been optimized for the cardiovascular system, or any other physiological system for that matter. Before artificial gravity protocols can be optimized for the cardiovascular system, cardiovascular responses to the variables of artificial gravity need to be quantified.

The research presented in this document is intended to determine how the artificial gravity variables, radius (gravity gradient) and lower limb exercise, affect cardiovascular responses during centrifugation. Net fluid (blood) shifts between body …