Life Sciences Commons^™

Ecology And Diversity Of Boletes Of The Southeastern United States, Arian Farid

USF Tampa Graduate Theses and Dissertations

The boletes are conspicuous stipito-pileate macrofungi that are generally defined by their tubulose hymenophores. Molecular phylogenetic analyses have informed extensive taxonomic revisions across the boletes. Despite this, the boletes in the southeastern USA have been largely absent from the literature. This dissertation seeks to understand the microbiome inhabiting the tuberculate ectomycorrhizae of the bolete Hemileccinum rubropunctum, and addresses taxonomic revisions of boletes found in the Boletaceae and Suillaceae. The introduction provides a brief background on boletes, as well as our understanding of tuberculate ectomycorrhizae. The second chapter seeks to understand the composition of the microbiome tuberculate ectomycorrhizae of H. rubropunctum …

Investigating Social Dynamics Using Automated Radiotracking Of Winter Flocks Of Black-Capped Chickadees (Poecile Atricapillus), Christopher J. Course

Electronic Thesis and Dissertation Repository

The major forces that govern social groups, namely fission-fusion dynamics, cohesion and maintenance, are nearly ubiquitous across animal groups. The field of animal collective behaviour has recently been married with automated radiotracking producing a ‘re-wilding’ of field research into sociality. The combination of this with Social Network Analysis has led to discoveries such as population wide information transfer and the flexibility of animal groups to change social connectivity based on environmental context. However, these networks are constructed, and do not include the dynamic environmental, spatio-temporal, and social contexts which directly affect sociality. I conducted the first automated radiotracking study I …

Investigation Of Arabidopsis Extremophyte Relatives, Schrenkiella Parvula And Eutrema Salsugineum Reveals Different Roads Leading To Salt Stress Tolerance, Kieu-Nga Thi Tran

LSU Doctoral Dissertations

How plants adapt to salt stress has been a central question in plant biology for decades. Yet we have not been able to fully understand the molecular networks and genetic mechanisms underlying this complex trait. Most of the genetic work on salinity stress has focused on understanding salt stress responses in the leading, yet a salt-sensitive model Arabidopsis thaliana. With the recent availability of genomes for wild-relatives of A. thaliana, we can now investigate how naturally salt adapted plants may have evolved modified or novel molecular networks to adapt to salt stress. Therefore, my research utilizes a comparative …

Insights Into O-Glcnac-Mediated Regulation Of Galectin Expression And Secretion In Promyelocytic Hl-60 Cells, Adam J. Mctague

Electronic Thesis and Dissertation Repository

Galectins are a family of -galactoside-binding proteins involved in cell stress responses and differentiation. Galectins are multifunctional proteins widely studied in many cell models including acute myeloid leukemia HL-60 cells where they mediate numerous intra- and extracellular functions in response to many stress-inducing stimuli. O-GlcNAcylation is a dynamic post-translational modification implicated in the regulation of many cellular diseases including cancers. The O-GlcNAc mediated expression and secretion of galectins during neutrophilic differentiation was examined in HL-60 cells. Galectin gene (LGALS), galectin protein expression, and galectin secretion were determined by RT-qPCR, immunoblotting, and ELISA, respectively. Inhibition of O-GlcNAcylation induced markers of differentiation …

Corn Nitrogen Management Under Different Tillage Systems, Akshara Athelly

LSU Master's Theses

Adoption of no-tillage (NT) and cover crops (CC) significantly effect soil physicochemical properties and nutrient cycling that necessitates modified nutrient management to maximize crop yields. Two field experiments were conducted to evaluate N-sources Urea Ammonium Nitrate (UAN), urea, and urea+ N-stabilizer (urea+ stab) and N-split applications 100%N at V2 (S1), 25%N at V2+75%N at V6 (S2), 25%N at V2+ 50%N at V6+ 25%N at VT (S3) in a sandy loam soil and three CC wheat (Triticum aestivum), hairy vetch (Vicia villosa) , and radish (Raphanus sativus) and their combinations along with three N-rates ( …

Machine Learning For Species Habitat Analysis, Abigail Lavallin

USF Tampa Graduate Theses and Dissertations

Management and conservation initiatives will always be controlled by finite resources, whether financialor temporal. Understanding a species’ spatial ecology, and how its requirements vary across habitats and locations is key to a successful species management plan. During recent decades, it has been noted how many species populations have declined, despite conservation practices working to increase their numbers. The most prevalent impacts affecting fauna populations have come from anthropogenic change in the form of habitat loss and destruction, along with fragmentation, and global climate change. There is a clear need for management practices to now operate on an entire landscape instead …

Insights Into Abscisic Acid And Phosphatidic Acid Signal Transduction Dynamics In Arabidopsis Thaliana, Ruth Wanjiru Ndathe

LSU Doctoral Dissertations

Abscisic acid (ABA) is a plant hormone that triggers a signaling transduction in response to drought, salinity, and cold. The core components in the ABA signaling pathway that lead to downstream ABA responses have been identified.

Phosphatidic acid (PA) is a membrane phospholipid that is involved in the signaling pathway for ABA-induced stomatal closure. We tested whether PA is involved in the signaling pathway for ABA-induced gene expression as well, using model plant Arabidopsis thaliana. We selected the RD29A gene which is a canonical drought gene that is induced by ABA. We found that PA is not involved in …

Genetic Structuring And Community Assembly In Neotropical Birds, Oscar Johnson

LSU Doctoral Dissertations

The factors that influence how species form is of fundamental interest to biology. Under the framework of the speciation cycle, the process begins by population subdivision creating structured populations that then diverge until two new species form. Following speciation, however, continued divergence is necessary for these new species to be able to coexist without adverse interactions, known as the transition to secondary sympatry. At this point the speciation cycle is complete and the process can begin anew. Many of the factors influencing these processes remain poorly understood. Here, I explore the factors that influence speciation and community assembly in Neotropical …

Using Uav Technology Paired With Multispectral Cameras To Assess Crown Rust Epidemics In Oats, Turner A. Graham

LSU Master's Theses

Crown rust, caused by Puccinia cornonata f. sp. avenae, is a common disease of oats (Avena sativa) found virtually everywhere oats are cultivated. This disease has caused yield losses of 10 to 40% worldwide. Early detection is important for effective management. A more recently utilized technology in agriculture is unmanned aerial vehicles (UAVs). UAVs, or drones, equipped with cameras are now being used as a resource to take images of fields to identify pests and other issues that may be occurring. Normalized differentiated vegetative index (NDVI) is a numerical indicator used to determine the vegetative health of …

Evaluating Substrate Stratification Practices For Enhanced Water Resource Management In Nursery Production, Kristopher S. Criscione

LSU Master's Theses

The nursery and greenhouse industries have continued to increase in production and sales over the past two decades. This increase in horticultural production necessitates a greater demand for finite natural resources, specifically water. Sustainable water resource management will be critical to the success and continual growth of the nursery industry. Strategic irrigation scheduling and innovative substrate management practices can improve nursery resource efficiency. Soilless substrates were originally utilized by the industry to increase substrate air-filled porosity, to ensure adequately drained container systems. Thus, the implementation of these soilless substrates can lead to an inefficient use of water and fertilizer. Substrate …

Evolutionary Mechanisms For Host Resistance To Tumor Growth And Subsequent Cancer Cell Counter-Adaptations, Arig Ibrahim Hashim

USF Tampa Graduate Theses and Dissertations

Cancer is well-recognized as an evolutionary system, as first proposed by Cairns and Nowell more than 60 years ago. In an evolutionary context, cancers growing in vivo typically consist of heterogeneous subpopulations of cells that interact with each other and with host cells through selection forces operating at many temporal and spatial scales. Moreover, the tumor environment comprises more than just cancer cells; it includes a rich cancer stroma and cancer-driving molecules such as cytokines and metabolites. The tumor’s environment comprises intratumoral heterogeneity that often leads to therapy resistance attributed to the essential roles of many genetic and nongenetic mechanisms. …

Casting A Critical Lens On Global Development: A Multimethod Investigation Of The Masculine Hegemonic Forces That Marginalize Women In Agriculture, Morgan Alyse Richardson Gilley

LSU Doctoral Dissertations

A critical link between gender equality and agricultural development has been established in the literature. However, disparities between genders have persisted in many areas of the developing world. One strategy that has been used to reduce gender inequalities has been educational outreach opportunities through agricultural extension, which has provided women a critical pathway to empowerment. Despite this, a lack of knowledge on the experiences of women in agriculture throughout Southeast Asia has served as a barrier to the advancement of such work. This investigation sought to better understand the issues facing this region’s fight to attain gender equality. To achieve …

High Rates Of Polygyny In Tropical Mexico Within The Native Range Of Vespula Squamosa., Alex K. Snyder, Kevin J. Loope

Honors College Theses

Polygyny, or the formation of colonies with multiple cooperating queens, has been observed in a variety of social Hymenoptera and likely exists as a convergent evolutionary strategy. Polygyne cooperation has been observed in several Vespula sp. and is correlated with a perennial social strategy. This perennial-polygyne behavior has been observed most commonly within the tropical and subtropical regions of the invasive Vespula pensylvanica and V. germanica, and rarely within their native temperate ranges. This phenomenon has been relatively undocumented within the tropical portions the V. squamosa native range, despite it being observed in their temperate ranges several times. We observed …

Investigation Of Immobilized Enzymes In Confined Environment Of Mesoporous Host Matrices, Xiaoliang Wang

USF Tampa Graduate Theses and Dissertations

Enzyme immobilization in metal-organic frameworks (MOFs) as a promising strategy, is attracting the interest of scientists from different disciplines with the expansion of MOF’s development. Different from other traditional host materials, their unique strengths of high surface areas, large yet adjustable pore sizes, functionalizable pore walls, and diverse architectures make MOFs an ideal platform to investigate hosted enzymes, which is critical to the industrial and commercial process. In addition to the protective function of MOFs, the extensive roles of MOFs in the enzyme immobilization are being well-explored by making full use of their remarkable properties like well-defined structure, high porosity, …

Consumers' Perception Of Food Containing Insect Protein Affected By Serving Condition And Questionnaire Protocol, Yupeng Gao

LSU Master's Theses

Edible insects are a new sustainable protein source compared to meat. Western consumers show aversion to the prospect of insects as food due to unfamiliarity, food neophobia, and negative emotions. This dissertation research explored consumers’ emotional perception of insect-based food products presented under different testing conditions and examined the influence of other people’s emotional expressions towards consumers’ purchase decisions. To identify and rate emotion intensities, tests were conducted using three presenting formats including text, image, and an actual product; all of which were applied for both cookies containing insects and without insects. In addition to these presenting formats, news of …

Direct Electrical Stimulation Of Prefrontal Cortex Modulates The Transient Heart Rate Response To Exercise In Conscious Humans, Bartek Kulas

Electronic Thesis and Dissertation Repository

Prefrontal cortical regions play an essential role in generating appropriate cardiovascular adjustments, particularly in cardio-vagally mediated heart rate (HR) responses to active tasks. Functional imaging studies provide correlational evidence that this region coordinates HR responses to exercise, however, direct experimental evidence of prefrontal cortical HR regulation in humans is not available. Seven persons with epilepsy implanted with intracranial electroencephalography (iEEG) completed 2-second isometric handgrip (IHG) contractions at no-stimulation (NO-STIM) or sham-stimulation (SHAM) conditions, and during direct electrical stimulation (STIM) of the orbitofrontal and medial prefrontal cortex. HR responses to IHG during NO-STIM and SHAM increased HR by Δ4.9±2.7 bpm, compared …

Ontogeny And Resource Use Of Invasive Lionfish, Pterois Volitans, In Shallow Water Habitats Surrounding Summerland Key, Emily Shallow

LSU Master's Theses

The invasive red lionfish, Pterois volitans, has been shown to considerably reduce reef biomass via predation and competition in non-native ranges. Primary maintenance of lionfish is through human removal (e.g., culling), which does not sufficiently control the population due to deep-water spawning, recolonization of recently culled reefs, and ontogenetic migrations to mesophotic waters. Here, I investigated the diets and primary energy pathways during ontogeny in lionfish from the Florida Keys using stomach contents and stable isotope (δ¹³C and δ¹⁵N) analysis to better understand their role in the trophic food web. Additionally, isotopic overlap between lionfish …

Juul 3% Menthol Aerosol Extracts Exhibit Toxicity And Alter Gene Expression Of Murine Macrophages, Samantha Jindia

Honors Theses

No abstract provided.

Parent Play Correlates With Infants’ Object Construction Skill, Makayla Barber

Honors Theses

No abstract provided.

Exploration Of Staphylococcus Aureus Immune Inhibitory Proteins’ Structures And Investigation Of Their Effects On Monocyte And T Cell Adhesion, Jena Elizabeth Bordelon

Honors Theses

No abstract provided.

Analysis Of Young, Lineage Specific Alu Elements In Cebus, Catherine Rockwell

Honors Theses

No abstract provided.

Fuel Inventory Report For Montana De Oro State Park, Spencer Gordon

Master of Science in Environmental Sciences and Management Projects

Within the last century anthropogenic effects have shifted fire resilient habitats that are adapted to thousands of years of frequent low intensity fires to landscapes that are susceptible to extreme fire behavior which threaten human assets and sensitive natural resources. Entities that manage forests will need to prioritize fuel reduction as a management tool to promote forest health and mitigate hazardous fire conditions. A fuel inventory of a eucalyptus forest at Montana De Oro State Park in Los Osos, CA was collected using a combination of Brown’s 1973 and Brown’s 1982 methods. The fuel inventory revealed the eucalyptus forest yielded …

The Race To Fifty Feet: An Effort To Determine The Benefits Of Deepening The Mississippi River, Brian Miles

University of New Orleans Theses and Dissertations

This research examined the benefits and drawbacks of deepening the Lower Mississippi River to fifty feet. It established that the deepening of the Lower Mississippi River will impact not only the local area but also the inland regions that rely on the river systems and lower river ports for product movement. The perspectives of vessel operators, maritime industry experts and charterers are provided to offer insight. The sources for the research include educational literature, maritime research and interviews of industry experts. Based on this research, it is clear that this project will benefit many parties. The beneficiaries will include both …

How Object Storage Skills Relate To Language Development, Jessica Laurent

Honors Theses

No abstract provided.

Comparing Expression And Localization Of Syntaxin-1a And The Cystic Fibrosis Transmembrane Regulator In Adult Gallus Gallus Retinas, Rachel Lauren Butz

Honors Theses

No abstract provided.

Recovery Methodologies And High Intensity Interval Training, Blake W. Johnson, Malcom T. Whitehead

Electronic Theses and Dissertations

The purpose of this study was to determine recovery from Tabata bodyweight high intensity interval training (HIIT) exercise using different recovery assessment methodologies across 24- and 48-hour time intervals. Participants (23.2 ± 3.1 years old, 163.1 ± 19.9 lbs., and 22.8 ± 9.6 % body fat) consisted of 3 females and 7 males (n=10) Individuals who were recreationally trained (4+ days per week, 30+ minutes per day at moderate to vigorous intensity) and conducted both Trial A (24-hours between HIIT sessions) and Trial B (48-hours between HIIT sessions). Before and during each session, heart rate, countermovement jump, perceptual, …

Microbial Dark Matter: Culturing The Uncultured In Search Of Novel Chemotaxonomy, Sarah J. Kennedy

USF Tampa Graduate Theses and Dissertations

Although <1% of environmental isolates can be cultured, insights into the culturable fraction refine future techniques to unlock the cryptic biodiversity. This cryptic biodiversity is omnipresent within culture-independent surveys of environmental bacterial populations. Subsequently, these elusive organisms are termed “microbial dark matter” due to the intrigue surrounding their potential taxonomic and biosynthetic impacts. To this end of investigating bacterial-specific dark matter, we employed high-throughput culturing techniques to examine Gulf of Mexico sediments and sponges for chemotaxonomically important bacteria. Through stepwise implementation of permissive and selective recovery techniques, we succeeded in recovering over 150 unique bacterial isolates. We observed several isolates that pose as chemotaxonomically interesting, including several strains that belong to critical bioremediation taxa. In addition to these biotechnological-amenable isolates, we have also succeeded in culturing taxa historically attributed with antibacterial discoveries. One such isolate was a previously sponge-associated organism belonging to the rarely cultured Verrucosispora genus. Through extensive comparative genomics, we identified it as a novel species and subsequently named it Verrucosispora sioxanthis sp. nov. with the published genome serving as a resource for continued microbial dark matter investigations. Following continued passaging of the organism, we observed improved growth, biomass, and liquid growth dispersal within each increasingly sub-passaged generation of the isolate. As such, the laboratory attenuation, or domestication, of the organism warranted in-depth whole genomic analyses to generate insight into the increased laboratory sustainability. Through phenotypically-guided bioinformatics, we determined that the domestication was mediated through genome-wide selective pseudo- or non-pseudogenization of genes. As the previously sponge-associated organism evolved with the selection pressures of the static laboratory, we demonstrate that isolate effectively underwent genomic atrophy to resolve into a largely stable, sustainable laboratory-domesticated strain. Collectively, our chemotaxonomic discovery pipeline expands on the culturable bacterial biodiversity and ultimately provides a previously uncultured model organism for initial forays into resolving the microbial dark matter knowledge gap.

Molecular Mechanism Of Action Of The Natural Polyphenolic Compound And The P300 Inhibitor “Carnosol” Against The Triple Negative Breast Cance, Halima Ali Mohammed Salem Alsamri

Dissertations

Carnosol, a naturally occurring Phyto polyphenol found in sage, oregano, and rosemary, has been extensively studied by our laboratory for its anticancer effects in various types of cancer. In human Triple-Negative Breast Cancer (TNBC), carnosol was shown to inhibit cellular viability, colony growth, induced cell cycle arrest, autophagy, and apoptosis. Nonetheless, very little is known about the molecular mechanism of action. In the current study, the ability of carnosol to inhibit metastasis and tumour growth was examined. Wound healing and invasion assays revealed that carnosol inhibited migration and invasion at non-cytotoxic concentrations of MDA-MB-231 cells. Also, carnosol was found to …

Response Of Five Chenopodium Quinoa Varieties To Different Salinity Levels, Elevated Co₂ And Uvb, Saif Ali Matar Al Blooshi

Theses

Ecosystems have been affected by climate changes. Both agriculture and environmental changes are correlated with various features since climate change is the main cause of abiotic and biotic stress which affects crop plants. The climate changes and their severe impact on plant productivity showed great intensities due to the effects of abiotic stress. In the present investigation, five quinoa varieties viz KAUST- 05395/CHFN-68 (V1), KAUST-05398/PI-614889 (V2), KAUST-05397/PI-614885 (V3), KAUST-05403/ICBA-Q3 (V4), and KAUST-05399/PI-614888 (V5) were screened for their salinity stress response by measuring the morphological parameters such as total plant height, fresh and dry weight of shoot and roots. V4 and …

Studying Neurotoxic Effects Of Three Synthetic Insecticides And Two Herbal Infusions On The Nervous System Of The Fruit Fly Drosophila Melanogaster, Sara Khamis Obaid Hamarain Al Dhaheri

Theses

Pesticides applied on plants and animals can reach the human diet once they enter food chains. Insecticides are neurotoxic agents; they have the potential of causing damage to the nervous system in people. The damage could induce or promote neurodegenerative diseases such as the Parkinson’s and Alzheimer's. It is well-documented that the exposure to the insecticide chlorpyrifos (CPF) stimulate the Parkinson disease in humans and experimental animals. Thus, this research project will study effect of three synthetic insecticides pirimicarb, tefluthrin, and CPF on the nervous system of Drosophila melanogaster as a model organism. In addition, the project will evaluate the …