Life Sciences Commons^™

An Assessment Of The Diverse Freshwater Turtle Fauna Of Mississippi, Lucas Haralson

Master's Theses

Nestled within the Southeastern United States Turtle Priority Area, Mississippi boasts impressive freshwater turtle diversity and is home to 8.6% of extant turtle species. Despite this impressive richness, few studies have assessed freshwater turtle assemblages in this hotspot of aquatic diversity. This research aimed to elucidate the distributions and abundances of freshwater turtle species through a statewide investigation of all major river drainages of the state. Using baited hoop nets (90 cm and 120 cm diameter), turtles were collected, identified to species and sex, and measured, before being released. Turtle assemblages were assessed in both lotic and lentic environments from …

Estimating And Modeling Transpiration Of A Mountain Meadow Encroached By Conifers Using Sap Flow Measurements, Simon Joseph Marks

Master's Theses

Mountain meadows in the western USA are experiencing increased rates of conifer encroachment due to climate change and land management practices. Past research has focused on conifer removal as a meadow restoration strategy, but there has been limited work on conifer transpiration in a pre-restoration state. Meadow restoration by conifer removal has the primary goal of recovering sufficient growing season soil moisture necessary for endemic, herbaceous meadow vegetation. Therefore, conifer water use represents an important hydrologic output toward evaluating the efficacy of this active management approach. This study quantified and evaluated transpiration of encroached conifers in a mountain meadow using …

Effects Of Nitrogen Management And Cultivar On Strawberry Production Under Disease Pressure, Kamille A. Garcia-Brucher

Master's Theses

Effects of nitrogen management and cultivar on strawberry production under disease pressure

Kamille Garcia-Brucher

California strawberry growers face increasing regulatory pressures to manage nitrogen (N) applications in their production system. Standard practice in the California strawberry industry is to apply a synthetic pre-plant controlled release fertilizer (CRF) to ensure the crop has sufficient N during winter establishment. Some research from the UC Cooperative Extension suggests this practice is not efficient at delivering N to the crop since most of the N is released from CRF before strawberry crop N uptake is significant. Another concern for California strawberry growers is loss …

Classifying Electrocardiogram With Machine Learning Techniques, Hillal Jarrar

Master's Theses

Classifying the electrocardiogram is of clinical importance because classification can be used to diagnose patients with cardiac arrhythmias. Many industries utilize machine learning techniques that consist of feature extraction methods followed by Naive- Bayesian classification in order to detect faults within machinery. Machine learning techniques that analyze vibrational machine data in a mechanical application may be used to analyze electrical data in a physiological application. Three of the most common feature extraction methods used to prepare machine vibration data for Naive-Bayesian classification are the Fourier transform, the Hilbert transform, and the Wavelet Packet transform. Each machine learning technique consists of …

Examination Of Methylation Status And Occupancy Of Dna Methylation Modifying Proteins On Regulatory Regions Of The Dax-1 Gene, Caroline P. Riedstra

Master's Theses

Epigenetic modifications influence gene expression and thereby play a pivotal role in development and disease. Misregulation and mutations in the DAX-1 gene, or Dosage-Sensitive Sex Reversal, Adrenal Hypoplasia Congenita, Critical Region on the X chromosome, gene 1, have been implicated in Adrenal Hypoplasia Congenita (AHC) and Dosage Sensitive Sex Reversal (DSS). The orphan nuclear hormone receptor DAX-1 is expressed predominantly in tissues such as the testes, ovaries, breast, adrenal cortex, and lung. Critically, DAX-1 may serve as an indicator of aberrant growth in these tissues. Here we hypothesize that DAX-1 is epigenetically regulated, specifically in cancer cells, thereby reducing its …

Climate Adaptation And Water Conservation Decision-Making In Paso Robles, California Vineyards, Christopher R. Klier

Master's Theses

This paper examines vineyard perceptions and adoption of climate change adaptation and water conservation measures in the Paso Robles American Viticultural Area (AVA). A survey was distributed to all 220 vineyards and vineyard management companies that operate in the AVA, with a 53.64% response rate. The objective of the survey was to determine vineyard manager and owner attitudes towards climate change and adaptation, as well as their perceptions of how these threats would impact their operation. A second objective was to document the current level of water conservation and climate adaptation while identifying the barriers and opportunities for further adoption …

Polycyclic Aromatic Hydrocarbons And The Microbiomes Of Two Benthic Species, Samantha Ells

Master's Theses

The presence of oil has been shown to affect the microbiomes of the water column, sediments, and organisms, both by altering the diversity and the composition of those microbial communities. If the microbiome is altered it may no longer provide benefits to its host organism, impacting its ability to survive. Thus, it is important to understand the effects of large-scale contamination events including the Deepwater Horizon oil spill. This study set out to examine the effects of oil exposure on the microbiome of two benthic species, southern flounder (Paralichthys lethostigma) and eastern oysters (Crassostrea virginica) to further understand the effects …

Characterization Of The Bacterial Microbiome Of Exotic Tick Species Collected From Migratory Birds, Raima Sen

Master's Theses

Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to …

Population Parameter Estimation And Stable Isotope Analysis Of Gulf Sturgeon (Acipenser Oxyrinchus Desotoi) In The Pascagoula River, Alfonso Cohuo

Master's Theses

Gulf Sturgeon (GS), Acipenser oxyrinchus desotoi, are a threatened, anadromous fish species in the northern Gulf of Mexico. Their range is from the Pearl River, LA, in the west to the Suwannee River, FL, in the east with a longitudinal divide at Mobile Bay, AL, creating a western population unit (WPU) and an eastern population unit (EPU). Sturgeon belonging to the WPU exhibit lower abundances, higher mortality rates, and are overall less studied than their EPU counterparts. Notable data gaps for the WPU includes the absence of recent population parameter estimations and confirmed feeding habitat. My thesis aims to …

Spatial And Seasonal Patterns Of Above- And Belowground Vegetation Biomass And Potential Drivers In The Pascagoula River Delta, Ms, Evan Grimes

Master's Theses

Coastal wetlands provide a valuable wealth of services to the greater coastal ecosystem and human communities. However, threats such as sea level rise and conservation projects, such as freshwater diversions, have the potential to alter coastal wetlands in different ways. In this thesis, I describe the effects of inundation and nitrogen on vegetation productivity using a field-sampling approach and an in situ controlled mesocosm experiment, called a marsh organ. The West Channel of the Pascagoula River contained significantly higher belowground biomass than the East Channel, which is more anthropogenically modified. Vertical distribution of belowground biomass did not strongly vary between …

Comparison Of Animal Versus Plant-Based Protein Supplementation To Nitrogen Balance In Female College Students, Adeline Maykish

Master's Theses

Plant-based diets have become popular in the past 10 years, with approximately 11% of Americans self-identifying as vegan or vegetarian, and many others trying to reduce meat consumption. Due to this increasing interest, the plant-based food market has exploded with several novel innovative products serving as alternatives to animal-based products. One such example is almond protein powder, a fairly new protein supplement created as an alternative to whey protein. A number of studies have compared animal-based protein supplementation, such as whey to plant-based supplementation, such as soy, on muscle protein synthesis and skeletal muscle preservation. Due to the novelty of …

Analysis Of The Slo Bay Microbiome From A Network Perspective, Lien Viet Nguyen

Master's Theses

Microorganisms are key players in the ecosystem functioning. In this thesis, we developed a framework to preprocess raw microbiome data, build a correlation network, and analyze co-occurrence patterns between microbes. We then applied this framework to a marine microbiome dataset. The dataset used in this study comes from a year-long time-series to characterize the microbial communities in our coastal waters off the Cal Poly Pier. In analyzing this dataset, we were able to observe and confirm previously discovered patterns of interactions and generate hypotheses about new patterns. The analysis of co-occurrences between prokaryotic and eukaryotic taxa is relatively novel and …

The Effects Of Vine Age On Vine Performance, Fruit, And Wine Composition Of Zinfandel In The Templeton Gap Ava, California, Vegas L. Riffle

Master's Theses

A two-year study was conducted at a commercial vineyard in California’s Templeton Gap AVA to evaluate the effect of vine age on viticultural, enological, and sensory attributes of Vitis vinifera L. cv. Zinfandel grapes and wines. The experimental block was dry farmed, conventionally managed, with own-rooted Zinfandel vines that, when determined unproductive, were replaced with new vines of genetically identical scion plant material grafted onto St. George (Vitis rupestris Scheele) rootstock. Treatments included Young vines (5 to 12 years old), Control (representative proportion of young to old vines in the block), and Old vines (40 to 60 years old). …

Will Oakland Burn Again: Understanding The Fire Hazard In An Urban Park System, Alessandra M. Zambrano

Master's Theses

Though almost thirty years have passed since the 1991 Tunnel Fire, the wildfire hazard is still present in the Oakland Hills. This study was conducted to determine if the vegetation in the Oakland Hills had reverted back to fuel conditions that contributed to the Tunnel Fire, examine how the fire hazard has changed since 1991, and evaluate planned wildfire mitigation. The goal was to determine how fuel conditions have changed since 1991 and compare potential fire behavior to that of the Tunnel Fire. Additionally, the study examined the effectiveness of the mitigation actions described in the East Bay Regional Park …

Effects Of Compost On Soil Health And Greenhouse Gas Emissions: A Case Study In A Mediterranean Vineyard, Tsz Fai Wong

Master's Theses

Compost is commonly used as an organic amendment in cropping systems such as vineyards, and has been shown to be beneficial to carbon (C) sequestration and soil health. As perennial crops, grapevines have a larger potential for C sequestration than most crops. Yet, there is a lack of understanding regarding the relationship between compost application rate, the magnitude of C sequestration, and its environmental tradeoff in the form of greenhouse gas (GHG) emissions. In the study, we investigated the effects of compost application rate on soil C sequestration, GHG emissions, crop growth, and overall soil health after two annual compost …

Cattle Producer Motivations And Willingness To Participate In Industry Animal Welfare Program Verification, Chase Decoite

Master's Theses

As consumers have become increasingly interested in where their food comes from and how it is grown, the cattle and beef industry is without exception. Many consumers are beginning to question traditional animal husbandry practices and on-farm animal welfare protocol. It is essential that the food system meets new demands and understands consumer views. In order to address these concerns, the industry has rallied around the Beef Quality Assurance (BQA) program to set the standard for cattle welfare and beef quality, with the explicit goal of improving consumer confidence. The goal of this research is to determine if cattle producers …

Development Of A Portable Low-Moisture Food Pasteurization Device Using Rf Heating, Eric Jason Ohata

Master's Theses

Bacterial presence in low-moisture foods such as flour, cereals, baby formula, and spices, have become a concern due to sanitizing challenges. The food industry currently focuses on wet food sanitation as opposed to low-moisture foods because of bacteria’s inability to reproduce in low water activity media. Traditionally, food processing RF heating pasteurizes in mass quantities while an equivalent consumer device does not exist the market today. A consumer product would help eliminate food waste by providing an easy way to sanitize food and extend shelf life. The Portable Food Pasteurization (PFP) project is an interdisciplinary project involving the Electrical Engineering, …

Effects Of Plant Growth-Promoting Bacteria And Fungi On Strawberry Plant Health, Fruit Yield, And Disease Susceptibility, Mary Maher

Master's Theses

Studies on plant growth-promoting rhizobacteria (PGPR) and fungi (PGPF) as biostimulants have shown significant positive effects on plant health, fruit yield, or pest management. However, very few published studies to date have been specific regarding their effects on strawberries (Fragaria × ananassa), particularly on soilborne disease prevalence in organically grown strawberries. Empirical data on the results of using these products in commercial growing applications under various conditions would be highly valuable, especially for organic growers who have limited synthetic chemical pesticides, herbicides and fertilizers registered for use. The objective of this study is to evaluate the efficacy of …

Habitat Heterogeneity Affects The Thermal Ecology Of The Federally Endangered Blunt-Nosed Leopard Lizard, Nicole Gaudenti

Master's Theses

Global climate change is already contributing to the extirpation of numerous species worldwide, and sensitive species will continue to face challenges associated with rising temperatures throughout this century and beyond. It is especially important to evaluate the thermal ecology of endangered ectotherm species now so that mitigation measures can be taken as early as possible. A recent study of the thermal ecology of the federally endangered Blunt-Nosed Leopard Lizard (Gambelia sila) suggested that they face major activity restrictions due to thermal constraints in their desert habitat, but that large shade-providing shrubs act as thermal buffers to allow them …

Selection Of Overwintering Microclimate By Migratory Western Monarch Butterflies, Kiana Saniee

Master's Theses

Migratory species are expected to demonstrate habitat selection that occurs at multiple spatial and temporal scales. Western monarch butterflies migrate seasonally to overwinter in groves at geographically predictable locations along the California coast. To date, overwintering habitat selection by western monarch butterflies has been studied assuming that habitat selection occurs where overwintering aggregations form, meaning at the spatial scale where monarchs form dense overwintering aggregations within overwintering groves. We argue that since western monarch butterflies are migratory, studies of habitat selection could have commingled selection at different scales into a single spatial scale. This likely leads to ignoring some levels …

Evaluation Of Masculinization Treatments To Produce Feminized Hemp Seed (Cannabis Sativa L.), Ted Fitzgerald, J. Wyatt Brown

Master's Theses

Cannabis sativa L. (hemp) develops plants with either male or female flowers, and growers of hemp greatly prefer female flowers which bear the glandular trichomes that contain cannabinoids. Feminized (all female) seeds are highly desired, which are produced by crossing a female plant with a masculinized female plant. Masculinization is achieved through the inhibition of ethylene and/or addition of gibberellins before flower initiation in female plants. The hemp industry uses silver thiosulfate (STS) to masculinize hemp, but spraying silver poses environmental concerns. This study compared STS to three other ethylene-inhibiting agents: aminoethoxyvinylglycine (AVG), cobalt nitrate (CBN), and 1-methylcyclopropene (1-MCP). Treatments …

Reciprocal Transplant And Machine Learning Study Of Oak Mistletoe On Three Host Oak Species In Santa Margarita, California, Ella Abelli-Amen

Master's Theses

At Santa Margarita Ranch, California, oak mistletoe (Phoradendron villosum) parasitizes valley oak and blue oak but cannot be found growing on coast live oak despite its abundance and ability to parasitize coast live oak in other areas. It seems as though this species of mistletoe is specializing on certain host oak trees, but the mechanisms of this specialization are unknown. In order to investigate this pattern, we utilized a type of machine learning in GIS called supervised classification as well as a reciprocal transplant study in the field. The three species of oak trees were classified with 87% accuracy using …

Investigating The Mechanism Of The Escherichia Coli Atp-Binding Cassette (Abc) Transporter Metni, Matthew Foronda

Master's Theses

Chemical homeostasis is a baseline requirement for any cell to survive. ATP-binding cassette (ABC) transporters play a vital role in homeostasis by importing nutrients and exporting toxins against their concentration gradients by utilizing the energy of ATP hydrolysis. Malfunctioning ABC transporters cause a variety of health problems, including cystic fibrosis, Stargardt’s disease (vision loss), and the development of drug-resistant tumors. An important step in solving these medical issues is to first understand the structure and mechanism of ABC transporters. Various studies have made great strides in depicting the structure and details of different ABC transporters and their mechanisms, however, many …

Testing The Climatic Variability Hypothesis With Coastal And Inland Populations Of Mimulus Guttatus And Implications For These Populations Under Climate Change, Alec Chiono

Master's Theses

How climate shapes the niche of a species is a core interest in evolution and ecology. Research on the evolution of climatic niches can inform us on the historical relationship between organisms and their climate, and, in an era of great environmental change, what that relationship may look like in the future. In this study, I tested an essential idea in the history of climate niche research, the Climatic Variability Hypothesis, by comparing the thermal niche breadth of coastal and inland populations of Mimulus guttatus. Using thermal performance results from this experiment, I also forecasted how the suitability of …

The Role Of Med12 In Adipogenesis, Caroline Helen Rinderle

Master's Theses

In order for any function to occur within a cell, transcription factors must be able to interact with genes. When this occurs, genes are expressed, and ultimately, proteins are translated and perform the specific function that needs to be done within the cell. In order for this to occur, genes must interact with transcription machinery. The Mediator complex recruits transcription factors to genes in order to promote cell-type specific gene expression. The Mediator complex is a multi-protein complex consisting of four modules: head, middle, tail, and kinase. The kinase module is known to dissociate from the rest of the complex …

Relationship Between Jump Tests And Their Influence On Multidirectional Ground-Reaction Forces In Baseball Pitchers, Ryan Lis

Master's Theses

Jump tests are effective, valid, and reliable methods to examine lower body power and possibly influence ground reaction forces (GRFs) in baseball pitching. Purpose: To determine relationships between drive leg and stride leg GRFs and fastball velocities while pitching from the wind-up and stretch to 1) drive leg and stride leg GRFs of unilateral countermovement jumps (UCMJ) and bilateral countermovement jumps (BCMJ), 2) BCMJ, and drive and stride leg UCMJ height as well as bilateral broad jump (BBJ) and drive and stride leg unilateral lateral to medial jump (ULMJ) distances, and 3) BBJ estimated peak power. Methods: Nineteen Division I …

The Role Of Med31 And Med12 In Directing Adipogenesis Of Human Adult-Derived Mesenchymal Stem Cells, Joseph Straub

Master's Theses

Selective gene expression is crucial in maintaining the self-renewing and multipotent properties of stem cells. Mediator is a large, evolutionarily conserved, multisubunit protein complex that modulates gene expression by relaying signals from cell type-specific transcription factors to RNA polymerase II. In humans, this complex consists of 30 subunits arranged in four modules: head, middle, tail, and kinase. In our introduction, we show the state of the field of Mediator study with a focus on the critical kinase module. In the following chapters, we used siRNA knockdowns to investigate the roles of the highly-conserved core subunit MED31 and the kinase module …

The Effects Of A Loaded Pre-Competition Activity Using Tethered Swimming On 25-Yard Swim Sprint Performance 2021, Jacob Burchfield

Master's Theses

Warmup is a standard practice for swim competitions, but there is minimal scientific evidence regarding the effectiveness of pre-competition activities (PCA) after the swim warmup. This study examined whether a loaded PCA using tethered swimming while attached to a power rack improves performance in a 25-yard swim sprint. Post activation performance enhancement (PAPE) may be the proposed mechanism for improvement resulting from a loaded PCA. To determine if PAPE existed following the loaded PCA, varsity swimmers from SUNY Cortland performed a 25-yard sprint a loaded PCA and after an unloaded PCA (control). All participants performed a standard meet warmup (1600-yards) …

Developing An Adaptive Rock Climbing Curriculum For Suny Cortland Outdoor Pursuits 2021, Rebekah Mills

Master's Theses

SUNY Cortland Outdoor Pursuits opened in August of 2015 with the completion of the newly constructed Student Life Center. Outdoor Pursuits is a smaller department within the Recreational Sports Department. Outdoor Pursuits offers rock climbing services at its facility located in the Student Life Center. Currently, Outdoor Pursuits offers Bouldering and Top Roping services only when the Student Life Center is open, these hours are typically 3-10 pm. Monday-Friday and Saturday-Sunday 2-8 pm. These services are only provided to eligible SUNY Cortland faculty, staff, students, alumni, and other affiliated members. As the facility has grown in popularity during its operation, …

Effects Of Bacterial Metabolites In Conditioned Media On Colon Cancer Proliferation, Hunter Panier

Master's Theses

Cancer is the second leading cause of death in the United States with colorectal cancer (CRC) being the third most common type. Available treatments include a combination of surgery and chemotherapy but have debilitating side effects. These also have limited effectiveness in some cases, creating the need for additional treatment options, or supplementary treatments to increase their effectiveness. This is leading scientists to consider the microbiome to fix this shortcoming. Current research is focusing on the microbiome and its interactions with certain diseases, which could lead to pro- or prebiotic therapies. This work aims to establish specific bacterial species can …